Wall clock time and date at job start Tue Mar 31 2020 16:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47294 * 2 1 4 4 C 1.38238 * 120.00068 * 89.99507 * 3 2 1 5 5 C 1.38238 * 119.99787 * 179.97438 * 4 3 2 6 6 C 1.38226 * 120.00196 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00158 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.47036 * 340.00667 * 7 6 5 9 9 N 1.46499 * 109.47380 * 220.00015 * 7 6 5 10 10 C 1.34779 * 119.99820 * 155.00106 * 9 7 6 11 11 O 1.21686 * 119.99861 * 359.97438 * 10 9 7 12 12 C 1.46373 * 119.99762 * 179.72395 * 10 9 7 13 13 H 1.08002 * 120.00044 * 353.86158 * 12 10 9 14 14 C 1.40053 * 120.00061 * 173.85735 * 12 10 9 15 15 N 1.30663 * 119.99640 * 6.10277 * 14 12 10 16 16 Si 1.86793 * 119.99905 * 186.09900 * 14 12 10 17 17 H 1.48499 * 109.46952 * 94.98765 * 16 14 12 18 18 H 1.48502 * 109.47010 * 214.98629 * 16 14 12 19 19 H 1.48496 * 109.47377 * 334.98690 * 16 14 12 20 20 C 1.50712 * 109.46831 * 99.99842 * 7 6 5 21 21 C 1.38264 * 119.98385 * 79.73314 * 20 7 6 22 22 C 1.38222 * 120.04783 * 179.72702 * 21 20 7 23 23 C 1.38215 * 120.02547 * 0.53939 * 22 21 20 24 24 C 1.38442 * 119.97574 * 359.73022 * 23 22 21 25 25 F 1.35094 * 120.02396 * 180.02562 * 24 23 22 26 26 C 1.38169 * 119.98791 * 259.99970 * 20 7 6 27 27 C 1.38238 * 120.00365 * 0.27295 * 6 5 4 28 28 C 1.38236 * 119.99365 * 359.51957 * 27 6 5 29 29 H 1.09001 * 109.46699 * 60.00234 * 1 2 3 30 30 H 1.08992 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47053 * 300.00206 * 1 2 3 32 32 H 1.09000 * 109.47424 * 239.99986 * 2 1 3 33 33 H 1.09000 * 109.47214 * 119.99838 * 2 1 3 34 34 H 1.07997 * 119.99885 * 359.97438 * 4 3 2 35 35 H 1.08001 * 119.99285 * 180.02562 * 5 4 3 36 36 H 0.97003 * 120.00017 * 334.99711 * 9 7 6 37 37 H 0.97007 * 120.00283 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.97642 * 359.97213 * 21 20 7 39 39 H 1.08004 * 119.98943 * 180.27748 * 22 21 20 40 40 H 1.08001 * 120.01518 * 179.70693 * 23 22 21 41 41 H 1.08007 * 120.01284 * 0.02915 * 26 20 7 42 42 H 1.07998 * 120.00404 * 179.72321 * 27 6 5 43 43 H 1.08005 * 120.00247 * 180.27403 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7241 3.3756 1.1971 6 6 2.9556 4.0268 0.0000 7 6 3.4579 5.4476 0.0000 8 1 3.2469 5.9076 0.9653 9 7 2.7847 6.2036 -1.0590 10 6 2.6644 7.5423 -0.9590 11 8 3.1147 8.1229 0.0110 12 6 1.9971 8.2984 -2.0199 13 1 1.6895 7.7995 -2.9271 14 6 1.7574 9.6688 -1.8587 15 7 2.2335 10.2971 -0.8166 16 14 0.7571 10.5983 -3.1333 17 1 -0.6620 10.6597 -2.7003 18 1 1.2920 11.9765 -3.2734 19 1 0.8461 9.8976 -4.4396 20 6 4.9449 5.4546 -0.2454 21 6 5.4338 5.3125 -1.5309 22 6 6.7972 5.3243 -1.7581 23 6 7.6736 5.4671 -0.6990 24 6 7.1854 5.6039 0.5893 25 9 8.0412 5.7441 1.6252 26 6 5.8192 5.5975 0.8150 27 6 2.7204 3.3769 -1.1972 28 6 2.2632 2.0723 -1.1971 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0822 1.5635 2.1324 35 1 2.9044 3.8845 2.1325 36 1 2.4255 5.7408 -1.8321 37 1 2.0678 11.2463 -0.7050 38 1 4.7499 5.1961 -2.3585 39 1 7.1779 5.2178 -2.7632 40 1 8.7390 5.4716 -0.8762 41 1 5.4371 5.7037 1.8196 42 1 2.8970 3.8872 -2.1325 43 1 2.0836 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320371470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:22 Heat of formation + Delta-G solvation = -64.947094 kcal Electronic energy + Delta-G solvation = -26998.366072 eV Core-core repulsion = 23114.255068 eV Total energy + Delta-G solvation = -3884.111004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.93473 -41.22644 -39.76803 -38.98582 -36.33579 -34.68476 -34.12650 -32.45878 -31.77542 -31.34269 -30.36188 -28.52794 -26.65869 -24.23279 -24.09716 -23.34606 -22.78976 -21.73833 -20.97466 -19.44700 -18.38370 -17.61012 -17.50171 -17.13391 -17.00140 -16.61916 -16.37477 -16.17626 -15.72663 -15.70229 -15.27818 -14.69218 -14.65613 -14.53997 -14.28560 -14.17293 -14.08347 -13.98667 -13.52209 -13.27836 -13.12937 -12.86232 -12.79345 -12.61067 -12.59400 -12.43250 -12.11134 -12.03266 -12.00407 -11.69186 -11.61835 -10.93247 -10.05329 -9.85254 -9.80554 -9.70449 -9.51050 -9.39635 -8.28862 -6.83898 0.15483 0.22693 0.45418 0.51277 1.40490 1.41344 1.57046 2.24156 2.47455 2.59738 2.81628 2.99933 3.33090 3.59962 3.74200 3.81670 3.87862 3.93793 4.00837 4.12942 4.14003 4.27269 4.33096 4.45304 4.52585 4.55282 4.60894 4.73390 4.74987 4.88323 5.06519 5.08945 5.11558 5.12733 5.13511 5.22949 5.33070 5.33853 5.43200 5.50601 5.52531 5.66430 5.73585 5.88676 5.94415 6.11214 6.18958 6.27318 6.88297 7.52943 8.50288 8.68316 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007906 B = 0.004581 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3540.978667 B = 6110.286551 C = 8691.816001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.086 4.086 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.095 4.095 7 C 0.236 3.764 8 H 0.056 0.944 9 N -0.739 5.739 10 C 0.544 3.456 11 O -0.626 6.626 12 C -0.571 4.571 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.821 5.821 16 Si 0.994 3.006 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.246 1.246 20 C -0.058 4.058 21 C -0.118 4.118 22 C -0.087 4.087 23 C -0.158 4.158 24 C 0.078 3.922 25 F -0.148 7.148 26 C -0.163 4.163 27 C -0.110 4.110 28 C -0.115 4.115 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.395 0.605 37 H 0.273 0.727 38 H 0.135 0.865 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -20.077 -3.515 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.096 4.096 7 C 0.130 3.870 8 H 0.074 0.926 9 N -0.394 5.394 10 C 0.348 3.652 11 O -0.513 6.513 12 C -0.607 4.607 13 H 0.107 0.893 14 C -0.184 4.184 15 N -0.451 5.451 16 Si 0.814 3.186 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.169 1.169 20 C -0.060 4.060 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.176 4.176 24 C 0.059 3.941 25 F -0.127 7.127 26 C -0.183 4.183 27 C -0.129 4.129 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.211 -19.500 -2.668 19.805 hybrid contribution -0.312 1.015 0.117 1.068 sum 1.899 -18.485 -2.551 18.756 Atomic orbital electron populations 1.21745 0.94404 1.02414 1.01776 1.20576 0.96307 0.90962 1.03902 1.20244 0.98156 0.97471 0.92726 1.21192 0.99642 0.93870 0.98934 1.21111 0.99875 0.95905 0.97113 1.19750 1.00941 0.93789 0.95072 1.18159 0.87282 0.89001 0.92601 0.92624 1.45914 1.62696 1.06970 1.23790 1.18567 0.79003 0.80516 0.87070 1.90571 1.54246 1.69868 1.36567 1.21388 1.41187 0.94425 1.03708 0.89327 1.26919 0.95075 0.98604 0.97802 1.70196 1.36349 1.10089 1.28435 0.85054 0.77949 0.77168 0.78439 1.18989 1.20004 1.16874 1.20194 0.95483 0.96533 0.93770 1.21207 0.96519 0.99782 0.96115 1.21359 0.91990 0.97045 1.00104 1.21401 1.02418 1.03577 0.90243 1.17824 0.86912 1.04167 0.85185 1.91444 1.69867 1.93582 1.57814 1.21022 0.92128 1.04652 1.00458 1.21048 0.99308 0.95421 0.97097 1.21254 0.99249 0.93964 0.98817 0.92987 0.90878 0.93324 0.89741 0.90130 0.84187 0.86452 0.76980 0.91715 0.84744 0.81495 0.82155 0.85962 0.85397 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.90 71.98 0.71 -1.29 16 2 C -0.08 -1.14 6.06 29.85 0.18 -0.96 16 3 C -0.09 -1.77 5.13 -19.87 -0.10 -1.87 16 4 C -0.12 -2.74 9.70 22.27 0.22 -2.53 16 5 C -0.12 -3.51 9.67 22.27 0.22 -3.30 16 6 C -0.09 -3.02 4.94 -19.87 -0.10 -3.12 16 7 C 0.24 9.38 2.38 43.50 0.10 9.49 16 8 H 0.06 2.61 7.30 -2.39 -0.02 2.59 16 9 N -0.74 -32.54 4.27 -453.98 -1.94 -34.48 16 10 C 0.54 31.05 7.70 86.36 0.66 31.72 16 11 O -0.63 -41.74 14.71 -4.30 -0.06 -41.81 16 12 C -0.57 -31.80 9.53 24.83 0.24 -31.56 16 13 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 14 C 0.03 1.73 5.49 85.31 0.47 2.20 16 15 N -0.82 -50.39 11.85 21.84 0.26 -50.13 16 16 Si 0.99 40.70 29.56 68.60 2.03 42.73 16 17 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 20 C -0.06 -2.19 4.90 -19.87 -0.10 -2.29 16 21 C -0.12 -3.84 9.12 22.27 0.20 -3.64 16 22 C -0.09 -2.36 10.04 22.26 0.22 -2.14 16 23 C -0.16 -4.44 10.03 22.31 0.22 -4.21 16 24 C 0.08 2.66 7.30 22.38 0.16 2.83 16 25 F -0.15 -5.00 17.27 44.97 0.78 -4.22 16 26 C -0.16 -6.16 9.65 22.31 0.22 -5.94 16 27 C -0.11 -2.94 8.85 22.27 0.20 -2.74 16 28 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.12 3.35 8.04 -2.91 -0.02 3.33 16 36 H 0.39 14.91 6.83 -92.71 -0.63 14.28 16 37 H 0.27 15.24 8.29 -92.70 -0.77 14.47 16 38 H 0.13 4.01 7.27 -2.91 -0.02 3.98 16 39 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.12 4.60 8.04 -2.91 -0.02 4.57 16 42 H 0.13 3.15 6.45 -2.91 -0.02 3.13 16 43 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -77.20 371.98 5.40 -71.79 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: 0.40 Total: 37.75 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 3.94 Total: -21.63 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.68 Total: -84.61 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.06 Total: -41.81 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -77.20 5.40 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320371470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.843 kcal (2) G-P(sol) polarization free energy of solvation -77.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds