Wall clock time and date at job start Tue Mar 31 2020 15:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39760 * 125.83847 * 2 1 4 4 C 1.36109 * 107.82449 * 180.15932 * 3 2 1 5 5 N 1.39479 * 126.21735 * 179.84446 * 4 3 2 6 6 C 1.34777 * 119.99460 * 359.69240 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72541 * 6 5 4 9 9 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 10 10 C 1.38407 * 119.82510 * 269.72365 * 9 8 6 11 11 C 1.37885 * 120.17314 * 179.76445 * 10 9 8 12 12 C 1.39847 * 119.82537 * 0.52908 * 11 10 9 13 13 C 1.47159 * 120.17410 * 179.70064 * 12 11 10 14 14 O 1.21249 * 120.00366 * 180.02562 * 13 12 11 15 15 C 1.39852 * 119.65530 * 359.72711 * 12 11 10 16 16 C 1.37891 * 119.82558 * 359.97438 * 15 12 11 17 17 N 1.35264 * 107.57265 * 359.58737 * 4 3 2 18 18 C 1.46490 * 126.04937 * 180.23556 * 17 4 3 19 19 C 1.50708 * 109.46990 * 90.00107 * 18 17 4 20 20 H 1.08000 * 119.99671 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00030 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00023 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46796 * 89.99655 * 23 21 19 25 25 H 1.48497 * 109.47087 * 209.99859 * 23 21 19 26 26 H 1.48496 * 109.46735 * 330.00379 * 23 21 19 27 27 N 1.30848 * 125.83569 * 179.69263 * 2 1 3 28 28 H 1.09004 * 109.47206 * 270.28172 * 1 2 3 29 29 H 1.09002 * 109.46598 * 30.27555 * 1 2 3 30 30 H 1.08996 * 109.47328 * 150.27965 * 1 2 3 31 31 H 1.07998 * 126.08710 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00055 * 179.69940 * 5 4 3 33 33 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 34 34 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 35 35 H 1.08010 * 119.90973 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.08316 * 180.22981 * 11 10 9 37 37 H 1.08008 * 119.99844 * 0.02850 * 13 12 11 38 38 H 1.08004 * 120.08744 * 179.97438 * 15 12 11 39 39 H 1.08004 * 119.90921 * 180.02562 * 16 15 12 40 40 H 1.09003 * 109.47347 * 209.99472 * 18 17 4 41 41 H 1.09003 * 109.47685 * 330.00117 * 18 17 4 42 42 H 0.97003 * 119.99988 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0036 5 7 4.7513 1.5274 -0.0079 6 6 4.6157 2.8683 -0.0150 7 8 3.5096 3.3661 -0.0172 8 6 5.8384 3.7492 -0.0134 9 6 5.4154 5.1957 -0.0154 10 6 5.2301 5.8570 -1.2171 11 6 4.8385 7.1790 -1.2274 12 6 4.6392 7.8548 -0.0194 13 6 4.2276 9.2676 -0.0214 14 8 4.0561 9.8507 1.0277 15 6 4.8337 7.1811 1.1906 16 6 5.2194 5.8573 1.1842 17 7 3.6092 -0.6405 0.0035 18 6 4.7870 -1.5116 0.0076 19 6 5.1913 -1.8029 1.4299 20 1 4.6276 -1.3809 2.2488 21 6 6.2809 -2.6081 1.6857 22 7 6.9671 -3.1224 0.6886 23 14 6.7826 -2.9686 3.4487 24 1 6.0822 -4.1893 3.9228 25 1 8.2505 -3.1841 3.5114 26 1 6.4135 -1.8190 4.3132 27 7 2.2730 -1.0608 0.0057 28 1 -0.3634 0.0051 1.0277 29 1 -0.3632 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5095 31 1 1.9902 2.1597 0.0004 32 1 5.6359 1.1293 -0.0058 33 1 6.4319 3.5456 0.8780 34 1 6.4354 3.5440 -0.9020 35 1 5.3895 5.3351 -2.1492 36 1 4.6907 7.6925 -2.1660 37 1 4.0781 9.7852 -0.9576 38 1 4.6821 7.6964 2.1277 39 1 5.3695 5.3356 2.1179 40 1 4.5496 -2.4460 -0.5011 41 1 5.6082 -1.0149 -0.5091 42 1 7.7334 -3.6892 0.8686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348122755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:03 Heat of formation + Delta-G solvation = 29.151449 kcal Electronic energy + Delta-G solvation = -26238.596670 eV Core-core repulsion = 22378.486046 eV Total energy + Delta-G solvation = -3860.110624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95592 -40.16040 -39.27212 -38.18959 -34.77066 -33.79694 -33.27079 -32.09773 -31.29247 -29.51985 -28.92362 -27.69278 -26.06841 -24.31070 -23.02417 -22.87132 -21.67621 -20.72877 -19.75875 -19.29707 -17.39931 -17.03606 -16.74651 -16.53258 -16.38107 -15.57402 -15.43367 -14.93153 -14.65337 -14.55307 -14.37512 -14.13475 -14.00903 -13.88716 -13.69969 -12.90252 -12.81083 -12.54504 -12.51593 -12.38681 -12.01562 -11.97105 -11.78342 -11.60594 -11.29261 -11.11032 -10.92923 -10.42485 -10.37449 -10.10068 -9.99552 -9.85167 -9.55526 -9.21561 -9.03634 -8.76201 -7.95201 -7.47521 -6.37621 -4.46250 0.35230 1.16628 2.12917 2.20435 2.80427 3.07016 3.13682 3.20925 3.24966 3.54344 3.57498 3.80666 3.93115 4.20817 4.33701 4.46638 4.68849 4.75034 4.84970 4.95837 5.05141 5.15394 5.23814 5.33449 5.33887 5.56395 5.63455 5.75309 5.98379 6.01779 6.10307 6.13582 6.15536 6.23691 6.26777 6.39043 6.61627 6.64445 6.79495 7.00547 7.11239 7.47900 7.54401 7.58861 7.75502 7.87137 8.25222 8.58367 8.67413 9.21638 10.69462 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.002858 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.975604 B = 9794.865533 C =11122.273924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.301 3.699 5 N -0.640 5.640 6 C 0.520 3.480 7 O -0.507 6.507 8 C -0.106 4.106 9 C -0.026 4.026 10 C -0.119 4.119 11 C -0.067 4.067 12 C -0.198 4.198 13 C 0.384 3.616 14 O -0.464 6.464 15 C -0.058 4.058 16 C -0.118 4.118 17 N -0.345 5.345 18 C 0.257 3.743 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.285 5.285 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.417 0.583 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 18.594 -5.367 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.327 4.327 4 C 0.079 3.921 5 N -0.287 5.287 6 C 0.306 3.694 7 O -0.380 6.380 8 C -0.146 4.146 9 C -0.027 4.027 10 C -0.137 4.137 11 C -0.085 4.085 12 C -0.199 4.199 13 C 0.243 3.757 14 O -0.338 6.338 15 C -0.076 4.076 16 C -0.136 4.136 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.111 5.111 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.079 17.822 -4.851 18.502 hybrid contribution 1.070 -0.028 0.851 1.368 sum -0.009 17.793 -4.000 18.237 Atomic orbital electron populations 1.20020 0.87606 1.02319 1.02163 1.22033 0.96516 0.91060 1.01830 1.21265 0.89091 1.00418 1.21926 1.17928 0.88017 0.83340 1.02845 1.42795 1.08326 1.05560 1.72043 1.20366 0.91211 0.81221 0.76559 1.90674 1.26659 1.73631 1.47046 1.20746 0.96410 0.90896 1.06523 1.19551 0.95896 0.93618 0.93640 1.20990 1.00381 0.94656 0.97688 1.21308 0.95718 0.94363 0.97107 1.20913 1.07166 0.97397 0.94416 1.24078 0.71389 0.86936 0.93305 1.90521 1.37773 1.68400 1.37078 1.21376 0.94328 0.94010 0.97868 1.21042 1.00093 0.94540 0.97884 1.49356 1.06536 1.02194 1.54919 1.19619 0.77816 0.89786 0.98904 1.21340 1.13283 1.31946 0.91331 0.91728 1.24936 0.95684 0.94846 0.98205 1.69916 1.19245 1.32456 1.31150 0.86355 0.77638 0.79124 0.83600 1.20187 1.20823 1.19680 1.77360 0.86141 1.21806 1.25761 0.91317 0.91166 0.91544 0.82190 0.74651 0.86887 0.86998 0.85303 0.84993 0.87968 0.85015 0.85319 0.92560 0.93811 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.01 7.21 -82.44 -0.59 0.41 16 3 C -0.30 -5.97 9.58 -39.78 -0.38 -6.35 16 4 C 0.30 6.18 7.66 -153.15 -1.17 5.01 16 5 N -0.64 -10.45 5.42 -11.46 -0.06 -10.51 16 6 C 0.52 7.44 7.79 -10.98 -0.09 7.36 16 7 O -0.51 -8.76 13.16 5.55 0.07 -8.69 16 8 C -0.11 -1.00 5.82 -29.03 -0.17 -1.17 16 9 C -0.03 -0.27 4.38 -104.50 -0.46 -0.73 16 10 C -0.12 -1.07 9.67 -39.65 -0.38 -1.45 16 11 C -0.07 -0.53 9.80 -39.11 -0.38 -0.91 16 12 C -0.20 -1.82 5.87 -105.07 -0.62 -2.44 16 13 C 0.38 3.18 11.46 34.35 0.39 3.57 16 14 O -0.46 -5.66 17.17 5.58 0.10 -5.57 16 15 C -0.06 -0.60 9.60 -39.10 -0.38 -0.97 16 16 C -0.12 -1.22 9.68 -39.65 -0.38 -1.61 16 17 N -0.34 -7.94 3.60 -61.57 -0.22 -8.16 16 18 C 0.26 6.27 6.01 -5.20 -0.03 6.24 16 19 C -0.54 -14.25 9.39 -34.44 -0.32 -14.58 16 20 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 23 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 N -0.29 -6.60 12.56 33.65 0.42 -6.17 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.17 5.83 -52.49 -0.31 2.86 16 32 H 0.42 6.15 7.96 -40.82 -0.33 5.82 16 33 H 0.11 0.88 8.08 -51.92 -0.42 0.46 16 34 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.10 0.42 8.06 -52.48 -0.42 0.00 16 38 H 0.13 1.33 7.65 -52.48 -0.40 0.93 16 39 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -33.97 371.90 -8.25 -42.22 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.19 Total: 5.63 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -4.69 Total: -6.52 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.88 Total: -47.99 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.17 Total: -14.26 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.97 -8.25 -42.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348122755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.370 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds