Wall clock time and date at job start Tue Mar 31 2020 14:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35519 * 116.99895 * 2 1 4 4 C 1.39444 * 120.46918 * 179.97438 * 3 2 1 5 5 C 1.38210 * 118.48297 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.37169 * 180.02562 * 5 4 3 7 7 N 1.32457 * 119.25721 * 359.74346 * 5 4 3 8 8 C 1.32379 * 120.89684 * 0.51066 * 7 5 4 9 9 N 1.38930 * 119.17410 * 179.75534 * 8 7 5 10 10 C 1.34779 * 119.99751 * 179.73264 * 9 8 7 11 11 O 1.21267 * 120.00363 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99902 * 180.02562 * 10 9 8 13 13 H 1.09005 * 109.46892 * 59.99571 * 12 10 9 14 14 C 1.50694 * 109.47129 * 300.00095 * 12 10 9 15 15 H 1.07995 * 120.00702 * 124.61014 * 14 12 10 16 16 C 1.37884 * 119.99841 * 304.88230 * 14 12 10 17 17 N 1.31518 * 119.99485 * 5.99143 * 16 14 12 18 18 Si 1.86794 * 120.00101 * 185.98611 * 16 14 12 19 19 H 1.48498 * 109.47223 * 60.00495 * 18 16 14 20 20 H 1.48509 * 109.46892 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47288 * 300.00217 * 18 16 14 22 22 C 1.50700 * 109.47206 * 179.97438 * 12 10 9 23 23 C 1.38235 * 120.00224 * 313.11600 * 22 12 10 24 24 C 1.38238 * 120.00081 * 179.80905 * 23 22 12 25 25 C 1.38230 * 119.99851 * 0.39355 * 24 23 22 26 26 C 1.38237 * 119.99977 * 359.85596 * 25 24 23 27 27 C 1.38232 * 119.99668 * 133.38524 * 22 12 10 28 28 N 1.32405 * 121.65093 * 359.48194 * 8 7 5 29 29 H 1.09002 * 109.47057 * 60.00194 * 1 2 3 30 30 H 1.08996 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47347 * 300.00339 * 1 2 3 32 32 H 1.07995 * 120.76044 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.47454 * 89.99513 * 6 5 4 34 34 H 1.08997 * 109.47499 * 209.99752 * 6 5 4 35 35 H 1.09004 * 109.46933 * 329.99484 * 6 5 4 36 36 H 0.96993 * 120.00139 * 359.72876 * 9 8 7 37 37 H 0.97008 * 119.99706 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99749 * 359.97438 * 23 22 12 39 39 H 1.07994 * 119.99772 * 180.22402 * 24 23 22 40 40 H 1.07995 * 120.00479 * 179.83398 * 25 24 23 41 41 H 1.08000 * 120.00118 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.00286 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2919 0.0005 5 6 4.0204 2.5444 0.0011 6 6 5.5208 2.6851 0.0011 7 7 3.2469 3.6196 -0.0041 8 6 1.9278 3.5081 0.0003 9 7 1.1508 4.6598 -0.0002 10 6 -0.1937 4.5656 -0.0012 11 8 -0.7252 3.4756 -0.0020 12 6 -1.0365 5.8149 -0.0023 13 1 -0.8131 6.4031 -0.8924 14 6 -0.7295 6.6292 1.2280 15 1 -0.4200 7.6592 1.1305 16 6 -0.8383 6.0574 2.4779 17 7 -1.0946 4.7726 2.5932 18 14 -0.6216 7.1076 4.0074 19 1 -1.6424 8.1860 4.0162 20 1 -0.7849 6.2609 5.2165 21 1 0.7355 7.7106 4.0057 22 6 -2.4953 5.4367 -0.0039 23 6 -2.9581 4.4710 -0.8781 24 6 -4.2955 4.1213 -0.8767 25 6 -5.1716 4.7430 -0.0068 26 6 -4.7097 5.7124 0.8638 27 6 -3.3716 6.0594 0.8651 28 7 1.3305 2.3265 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0435 0.3990 0.0005 33 1 5.8826 2.7194 -1.0266 34 1 5.7995 3.6049 0.5152 35 1 5.9656 1.8327 0.5146 36 1 1.5759 5.5317 0.0002 37 1 -1.1708 4.3703 3.4726 38 1 -2.2743 3.9879 -1.5602 39 1 -4.6563 3.3643 -1.5572 40 1 -6.2169 4.4718 -0.0076 41 1 -5.3943 6.1984 1.5432 42 1 -3.0108 6.8167 1.5454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361360445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:34 Heat of formation + Delta-G solvation = 20.316762 kcal Electronic energy + Delta-G solvation = -28189.574006 eV Core-core repulsion = 24329.080281 eV Total energy + Delta-G solvation = -3860.493725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89545 -39.12580 -38.20794 -37.43825 -34.37464 -33.71046 -33.02953 -30.99375 -30.77458 -29.78495 -28.59407 -27.45635 -26.51268 -24.36793 -23.17644 -22.42865 -21.36094 -20.59358 -19.38199 -18.38209 -17.23004 -16.64639 -16.21639 -15.91987 -15.60278 -15.24809 -15.02911 -14.84868 -14.47098 -14.16675 -14.04269 -13.73028 -13.44789 -13.08792 -12.88882 -12.56991 -12.33921 -12.28028 -12.14574 -12.05631 -11.65140 -11.42834 -11.21800 -10.98081 -10.86074 -10.64034 -10.46898 -10.12160 -9.97465 -9.73897 -9.50108 -9.29242 -9.00372 -8.74236 -8.23726 -7.92915 -7.78414 -7.52066 -6.24849 -4.39793 1.45081 1.60900 2.42703 2.50449 3.17061 3.20253 3.25401 3.26115 3.45759 3.87264 4.22390 4.39876 4.51520 4.86713 5.01769 5.06820 5.14102 5.45806 5.51405 5.57234 5.59988 5.75702 5.77773 5.78038 5.88453 5.94692 5.96720 6.10807 6.23831 6.36750 6.43477 6.57486 6.66377 6.76466 7.01932 7.10304 7.18478 7.28623 7.45262 7.52994 7.60435 7.66089 7.68856 7.93216 8.07189 8.16272 8.61721 8.86116 9.27692 9.45917 10.76543 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.005002 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.527255 B = 5596.395662 C = 7008.898919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.308 6.308 3 C 0.385 3.615 4 C -0.303 4.303 5 C 0.223 3.777 6 C -0.099 4.099 7 N -0.583 5.583 8 C 0.594 3.406 9 N -0.630 5.630 10 C 0.544 3.456 11 O -0.472 6.472 12 C 0.062 3.938 13 H 0.063 0.937 14 C -0.547 4.547 15 H 0.071 0.929 16 C 0.075 3.925 17 N -0.841 5.841 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.018 4.018 23 C -0.100 4.100 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.071 4.071 28 N -0.551 5.551 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.420 0.580 37 H 0.267 0.733 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -3.812 -5.461 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.212 6.212 3 C 0.196 3.804 4 C -0.329 4.329 5 C 0.078 3.922 6 C -0.156 4.156 7 N -0.311 5.311 8 C 0.239 3.761 9 N -0.278 5.278 10 C 0.332 3.668 11 O -0.339 6.339 12 C 0.041 3.959 13 H 0.081 0.919 14 C -0.584 4.584 15 H 0.089 0.911 16 C -0.133 4.133 17 N -0.473 5.473 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.019 4.019 23 C -0.118 4.118 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.164 4.164 27 C -0.089 4.089 28 N -0.288 5.288 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.160 0.840 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.258 0.742 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.406 -4.203 -5.319 8.086 hybrid contribution 0.475 0.034 1.290 1.375 sum 4.881 -4.170 -4.029 7.580 Atomic orbital electron populations 1.22889 0.76203 1.02052 1.04091 1.86154 1.23829 1.24274 1.86933 1.19971 0.88900 0.85079 0.86467 1.21349 0.92647 0.99913 1.18942 1.21075 0.96510 0.86830 0.87809 1.20699 0.87799 1.03790 1.03355 1.67728 1.04287 1.33937 1.25101 1.19309 0.84555 0.85892 0.86386 1.43703 1.07301 1.05789 1.70959 1.21535 0.79713 0.92762 0.72789 1.90609 1.70364 1.29456 1.43472 1.17861 0.88456 0.90958 0.98635 0.91934 1.20688 1.50720 0.98113 0.88921 0.91103 1.25079 0.94033 0.94897 0.99327 1.69993 1.43261 1.09487 1.24538 0.86679 0.79045 0.80398 0.82265 1.19718 1.21287 1.19947 1.19786 0.95335 0.93821 0.92980 1.20990 0.94442 0.96997 0.99362 1.20831 0.94096 1.00724 1.00319 1.20804 0.98344 0.98731 0.98200 1.21014 0.96241 0.99340 0.99815 1.21190 0.91449 0.99399 0.96840 1.68167 1.39143 0.97172 1.24326 0.91792 0.89231 0.91295 0.84001 0.89898 0.89981 0.90322 0.74237 0.92235 0.87397 0.87981 0.88073 0.87876 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.41 101.05 1.05 1.74 16 2 O -0.31 -5.35 10.49 -18.25 -0.19 -5.54 16 3 C 0.39 7.27 7.53 -16.72 -0.13 7.14 16 4 C -0.30 -4.75 9.80 -39.14 -0.38 -5.14 16 5 C 0.22 3.45 6.81 -82.34 -0.56 2.89 16 6 C -0.10 -1.01 10.21 36.00 0.37 -0.65 16 7 N -0.58 -10.81 10.39 -10.13 -0.11 -10.92 16 8 C 0.59 12.54 8.38 -322.30 -2.70 9.84 16 9 N -0.63 -13.38 5.30 -13.08 -0.07 -13.45 16 10 C 0.54 12.66 5.22 -10.98 -0.06 12.60 16 11 O -0.47 -11.99 12.05 5.57 0.07 -11.92 16 12 C 0.06 1.41 2.78 -94.08 -0.26 1.15 16 13 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 14 C -0.55 -12.88 7.09 -34.44 -0.24 -13.12 16 15 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 16 C 0.08 1.86 3.94 -17.82 -0.07 1.79 16 17 N -0.84 -22.51 11.12 55.43 0.62 -21.89 16 18 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.02 -0.42 4.64 -104.63 -0.49 -0.90 16 23 C -0.10 -2.15 8.21 -39.58 -0.32 -2.48 16 24 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.14 -2.70 10.05 -39.58 -0.40 -3.09 16 26 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 27 C -0.07 -1.58 8.49 -39.58 -0.34 -1.92 16 28 N -0.55 -11.94 6.81 -13.89 -0.09 -12.04 16 29 H 0.06 1.11 8.12 -51.93 -0.42 0.68 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 32 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.42 8.05 8.70 -40.82 -0.36 7.70 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.11 2.32 6.99 -52.49 -0.37 1.96 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 42 H 0.13 2.98 6.07 -52.49 -0.32 2.66 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -30.06 357.68 -9.96 -40.02 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.23 Total: 12.33 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -5.32 Total: 3.37 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.35 Total: -58.29 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.12 Total: -17.46 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.06 -9.96 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361360445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.340 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds