Wall clock time and date at job start Tue Mar 31 2020 14:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35519 * 116.99895 * 2 1 4 4 C 1.39444 * 120.46918 * 179.97438 * 3 2 1 5 5 C 1.38210 * 118.48297 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.37169 * 180.02562 * 5 4 3 7 7 N 1.32457 * 119.25721 * 359.74346 * 5 4 3 8 8 C 1.32379 * 120.89684 * 0.51066 * 7 5 4 9 9 N 1.38930 * 119.17410 * 179.75534 * 8 7 5 10 10 C 1.34779 * 119.99751 * 179.73264 * 9 8 7 11 11 O 1.21267 * 120.00363 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99902 * 180.02562 * 10 9 8 13 13 H 1.09005 * 109.46892 * 59.99571 * 12 10 9 14 14 C 1.50694 * 109.47129 * 300.00095 * 12 10 9 15 15 H 1.07995 * 120.00702 * 124.61014 * 14 12 10 16 16 C 1.37884 * 119.99841 * 304.88230 * 14 12 10 17 17 N 1.31518 * 119.99485 * 5.99143 * 16 14 12 18 18 Si 1.86794 * 120.00101 * 185.98611 * 16 14 12 19 19 H 1.48498 * 109.47223 * 60.00495 * 18 16 14 20 20 H 1.48509 * 109.46892 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47288 * 300.00217 * 18 16 14 22 22 C 1.50700 * 109.47206 * 179.97438 * 12 10 9 23 23 C 1.38235 * 120.00224 * 313.11600 * 22 12 10 24 24 C 1.38238 * 120.00081 * 179.80905 * 23 22 12 25 25 C 1.38230 * 119.99851 * 0.39355 * 24 23 22 26 26 C 1.38237 * 119.99977 * 359.85596 * 25 24 23 27 27 C 1.38232 * 119.99668 * 133.38524 * 22 12 10 28 28 N 1.32405 * 121.65093 * 359.48194 * 8 7 5 29 29 H 1.09002 * 109.47057 * 60.00194 * 1 2 3 30 30 H 1.08996 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47347 * 300.00339 * 1 2 3 32 32 H 1.07995 * 120.76044 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.47454 * 89.99513 * 6 5 4 34 34 H 1.08997 * 109.47499 * 209.99752 * 6 5 4 35 35 H 1.09004 * 109.46933 * 329.99484 * 6 5 4 36 36 H 0.96993 * 120.00139 * 359.72876 * 9 8 7 37 37 H 0.97008 * 119.99706 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.99749 * 359.97438 * 23 22 12 39 39 H 1.07994 * 119.99772 * 180.22402 * 24 23 22 40 40 H 1.07995 * 120.00479 * 179.83398 * 25 24 23 41 41 H 1.08000 * 120.00118 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.00286 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2919 0.0005 5 6 4.0204 2.5444 0.0011 6 6 5.5208 2.6851 0.0011 7 7 3.2469 3.6196 -0.0041 8 6 1.9278 3.5081 0.0003 9 7 1.1508 4.6598 -0.0002 10 6 -0.1937 4.5656 -0.0012 11 8 -0.7252 3.4756 -0.0020 12 6 -1.0365 5.8149 -0.0023 13 1 -0.8131 6.4031 -0.8924 14 6 -0.7295 6.6292 1.2280 15 1 -0.4200 7.6592 1.1305 16 6 -0.8383 6.0574 2.4779 17 7 -1.0946 4.7726 2.5932 18 14 -0.6216 7.1076 4.0074 19 1 -1.6424 8.1860 4.0162 20 1 -0.7849 6.2609 5.2165 21 1 0.7355 7.7106 4.0057 22 6 -2.4953 5.4367 -0.0039 23 6 -2.9581 4.4710 -0.8781 24 6 -4.2955 4.1213 -0.8767 25 6 -5.1716 4.7430 -0.0068 26 6 -4.7097 5.7124 0.8638 27 6 -3.3716 6.0594 0.8651 28 7 1.3305 2.3265 -0.0001 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0435 0.3990 0.0005 33 1 5.8826 2.7194 -1.0266 34 1 5.7995 3.6049 0.5152 35 1 5.9656 1.8327 0.5146 36 1 1.5759 5.5317 0.0002 37 1 -1.1708 4.3703 3.4726 38 1 -2.2743 3.9879 -1.5602 39 1 -4.6563 3.3643 -1.5572 40 1 -6.2169 4.4718 -0.0076 41 1 -5.3943 6.1984 1.5432 42 1 -3.0108 6.8167 1.5454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361360445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:33 Heat of formation + Delta-G solvation = 3.483666 kcal Electronic energy + Delta-G solvation = -28190.303944 eV Core-core repulsion = 24329.080281 eV Total energy + Delta-G solvation = -3861.223662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33022 -40.77492 -39.63473 -39.00121 -35.88033 -35.52979 -34.48737 -32.73492 -32.19006 -31.39828 -29.76757 -29.14482 -27.76971 -26.14605 -24.72244 -23.80912 -22.98426 -22.15119 -21.02555 -19.87190 -18.79606 -18.29193 -17.71610 -17.37204 -17.15153 -16.96796 -16.65177 -16.27933 -15.99079 -15.67651 -15.43022 -15.35943 -14.97168 -14.45775 -14.19579 -14.09373 -14.02171 -13.74100 -13.57342 -13.10151 -13.07698 -12.92722 -12.72572 -12.70134 -12.59180 -12.34703 -11.91769 -11.80644 -11.52817 -11.26945 -11.22234 -10.79778 -10.72251 -10.45983 -9.90956 -9.41701 -9.39474 -9.15560 -8.15067 -6.32299 0.04484 0.24417 0.82655 0.88440 1.40627 1.43572 1.48651 1.78986 2.01381 2.22949 2.41427 2.97311 3.09113 3.15298 3.27323 3.69588 3.89450 4.26095 4.30844 4.33591 4.35321 4.36407 4.40749 4.46898 4.58842 4.66933 4.73052 4.83217 4.87972 4.94064 4.96106 5.00728 5.10907 5.34045 5.40945 5.49565 5.62758 5.67492 5.86184 5.88202 5.89028 5.93285 6.26211 6.33593 6.41383 6.48874 6.75769 7.33902 7.37271 7.74245 8.84180 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.005002 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.527255 B = 5596.395662 C = 7008.898919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.304 6.304 3 C 0.357 3.643 4 C -0.287 4.287 5 C 0.218 3.782 6 C -0.093 4.093 7 N -0.588 5.588 8 C 0.569 3.431 9 N -0.632 5.632 10 C 0.545 3.455 11 O -0.500 6.500 12 C 0.054 3.946 13 H 0.076 0.924 14 C -0.538 4.538 15 H 0.078 0.922 16 C 0.041 3.959 17 N -0.872 5.872 18 Si 0.939 3.061 19 H -0.263 1.263 20 H -0.300 1.300 21 H -0.269 1.269 22 C -0.038 4.038 23 C -0.115 4.115 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.149 4.149 27 C -0.093 4.093 28 N -0.587 5.587 29 H 0.046 0.954 30 H 0.133 0.867 31 H 0.034 0.966 32 H 0.181 0.819 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.425 0.575 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 -4.378 -5.721 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.209 6.209 3 C 0.170 3.830 4 C -0.312 4.312 5 C 0.073 3.927 6 C -0.150 4.150 7 N -0.316 5.316 8 C 0.214 3.786 9 N -0.280 5.280 10 C 0.333 3.667 11 O -0.369 6.369 12 C 0.033 3.967 13 H 0.094 0.906 14 C -0.575 4.575 15 H 0.096 0.904 16 C -0.164 4.164 17 N -0.506 5.506 18 Si 0.765 3.235 19 H -0.187 1.187 20 H -0.227 1.227 21 H -0.194 1.194 22 C -0.039 4.039 23 C -0.134 4.134 24 C -0.161 4.161 25 C -0.157 4.157 26 C -0.167 4.167 27 C -0.111 4.111 28 N -0.324 5.324 29 H 0.065 0.935 30 H 0.151 0.849 31 H 0.053 0.947 32 H 0.198 0.802 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.264 0.736 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.328 -4.756 -5.594 9.072 hybrid contribution 0.270 0.158 1.300 1.337 sum 5.598 -4.597 -4.294 8.421 Atomic orbital electron populations 1.22862 0.75890 1.04005 1.01530 1.86161 1.24044 1.23682 1.86985 1.20486 0.90311 0.84792 0.87436 1.21823 0.91457 1.01563 1.16360 1.22062 0.98733 0.85992 0.85937 1.20884 0.83675 1.05239 1.05235 1.67826 1.03211 1.35403 1.25132 1.19440 0.85544 0.85671 0.87981 1.43499 1.06906 1.06416 1.71203 1.21550 0.80354 0.92475 0.72294 1.90578 1.71125 1.30316 1.44926 1.17980 0.88925 0.90974 0.98842 0.90621 1.20907 1.49153 0.98272 0.89208 0.90421 1.25596 0.93975 0.95339 1.01472 1.70172 1.45633 1.10984 1.23785 0.85890 0.79289 0.79107 0.79193 1.18718 1.22686 1.19406 1.19856 0.95325 0.94791 0.93908 1.21018 0.95543 0.97235 0.99556 1.21188 0.93282 1.00936 1.00680 1.21203 1.00066 0.97521 0.96864 1.21336 0.95655 0.99494 1.00262 1.21180 0.92783 0.99940 0.97173 1.68027 1.40883 0.98151 1.25346 0.93488 0.84881 0.94676 0.80168 0.87584 0.89867 0.87285 0.73642 0.93599 0.88368 0.85239 0.84329 0.85396 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.72 10.41 113.37 1.18 2.90 16 2 O -0.30 -10.51 10.49 -88.22 -0.93 -11.44 16 3 C 0.36 13.50 7.53 84.85 0.64 14.14 16 4 C -0.29 -8.44 9.80 22.55 0.22 -8.22 16 5 C 0.22 6.29 6.81 42.46 0.29 6.57 16 6 C -0.09 -1.57 10.21 71.23 0.73 -0.84 16 7 N -0.59 -21.62 10.39 -185.95 -1.93 -23.55 16 8 C 0.57 24.69 8.38 261.31 2.19 26.88 16 9 N -0.63 -27.89 5.30 -313.68 -1.66 -29.55 16 10 C 0.54 26.45 5.22 87.66 0.46 26.91 16 11 O -0.50 -26.70 12.05 -2.99 -0.04 -26.74 16 12 C 0.05 2.53 2.78 -13.03 -0.04 2.49 16 13 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 14 C -0.54 -25.79 7.09 25.60 0.18 -25.61 16 15 H 0.08 3.54 7.82 -2.91 -0.02 3.51 16 16 C 0.04 2.07 3.94 84.66 0.33 2.40 16 17 N -0.87 -48.33 11.12 21.45 0.24 -48.09 16 18 Si 0.94 40.86 29.54 68.60 2.03 42.89 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 C -0.04 -1.77 4.64 -19.87 -0.09 -1.86 16 23 C -0.12 -5.08 8.21 22.27 0.18 -4.90 16 24 C -0.14 -5.45 10.05 22.27 0.22 -5.22 16 25 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 26 C -0.15 -5.82 10.05 22.27 0.22 -5.60 16 27 C -0.09 -4.19 8.49 22.27 0.19 -4.01 16 28 N -0.59 -26.28 6.81 -310.56 -2.12 -28.40 16 29 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 30 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.03 1.39 8.12 -2.39 -0.02 1.37 16 32 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.22 8.09 -2.38 -0.02 1.20 16 36 H 0.43 16.93 8.70 -92.71 -0.81 16.13 16 37 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 38 H 0.10 4.42 6.99 -2.91 -0.02 4.40 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.11 5.40 6.07 -2.91 -0.02 5.39 16 Total: -1.00 -68.16 357.68 2.98 -65.18 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.25 Total: 38.39 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 7.13 Total: 21.31 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -5.47 Total: -129.59 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.96 Total: -38.17 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -68.16 2.98 -65.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361360445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.662 kcal (2) G-P(sol) polarization free energy of solvation -68.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds