Wall clock time and date at job start Tue Mar 31 2020 14:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35517 * 117.00197 * 2 1 4 4 C 1.39439 * 120.47264 * 180.02562 * 3 2 1 5 5 C 1.38209 * 118.48456 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.37063 * 180.02562 * 5 4 3 7 7 N 1.32461 * 119.25877 * 359.97438 * 5 4 3 8 8 C 1.32376 * 120.89306 * 0.02562 * 7 5 4 9 9 N 1.38932 * 119.17172 * 179.97438 * 8 7 5 10 10 C 1.34774 * 120.00186 * 180.02562 * 9 8 7 11 11 O 1.21257 * 119.99947 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00042 * 180.02562 * 10 9 8 13 13 H 1.09011 * 109.47149 * 299.99607 * 12 10 9 14 14 C 1.50694 * 109.47581 * 59.99538 * 12 10 9 15 15 H 1.08000 * 120.00061 * 26.77124 * 14 12 10 16 16 C 1.37881 * 120.00094 * 206.77727 * 14 12 10 17 17 N 1.31511 * 120.00067 * 353.45724 * 16 14 12 18 18 Si 1.86804 * 119.99818 * 173.46276 * 16 14 12 19 19 H 1.48505 * 109.47005 * 179.97438 * 18 16 14 20 20 H 1.48499 * 109.47038 * 299.99602 * 18 16 14 21 21 H 1.48498 * 109.47233 * 59.99667 * 18 16 14 22 22 C 1.50700 * 109.47294 * 180.02562 * 12 10 9 23 23 C 1.38245 * 119.99063 * 292.96402 * 22 12 10 24 24 C 1.38237 * 119.99094 * 179.78806 * 23 22 12 25 25 C 1.38235 * 120.00776 * 0.44132 * 24 23 22 26 26 C 1.38237 * 119.99573 * 359.81048 * 25 24 23 27 27 C 1.38230 * 120.00530 * 113.23619 * 22 12 10 28 28 N 1.32395 * 121.65420 * 0.25614 * 8 7 5 29 29 H 1.08996 * 109.46976 * 59.99854 * 1 2 3 30 30 H 1.08992 * 109.47575 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47231 * 300.00804 * 1 2 3 32 32 H 1.07994 * 120.75909 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47224 * 269.97900 * 6 5 4 34 34 H 1.09003 * 109.47360 * 29.97193 * 6 5 4 35 35 H 1.09001 * 109.47588 * 149.97707 * 6 5 4 36 36 H 0.97006 * 119.99608 * 359.97438 * 9 8 7 37 37 H 0.97003 * 120.00089 * 354.55726 * 17 16 14 38 38 H 1.07993 * 119.99971 * 0.02562 * 23 22 12 39 39 H 1.08007 * 119.99517 * 180.27674 * 24 23 22 40 40 H 1.07995 * 120.00434 * 179.83260 * 25 24 23 41 41 H 1.08000 * 120.00041 * 179.97438 * 26 25 24 42 42 H 1.07998 * 119.99906 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4361 1.2919 -0.0005 5 6 4.0205 2.5443 -0.0011 6 6 5.5209 2.6850 -0.0022 7 7 3.2470 3.6196 -0.0016 8 6 1.9280 3.5081 -0.0010 9 7 1.1509 4.6598 -0.0010 10 6 -0.1935 4.5657 0.0000 11 8 -0.7250 3.4758 0.0005 12 6 -1.0363 5.8150 -0.0006 13 1 -0.8130 6.4044 0.8888 14 6 -0.7292 6.6277 -1.2319 15 1 -0.3662 6.1396 -2.1243 16 6 -0.9115 7.9943 -1.2191 17 7 -1.4732 8.5731 -0.1804 18 14 -0.3608 9.0237 -2.6774 19 1 -0.6675 10.4534 -2.4181 20 1 1.1017 8.8587 -2.8756 21 1 -1.0792 8.5773 -3.8980 22 6 -2.4951 5.4369 0.0014 23 6 -3.0480 4.8099 -1.0997 24 6 -4.3851 4.4591 -1.0961 25 6 -5.1715 4.7433 0.0047 26 6 -4.6197 5.3749 1.1036 27 6 -3.2816 5.7219 1.1019 28 7 1.3306 2.3266 0.0050 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 4.0436 0.3990 -0.0005 33 1 5.8834 2.7193 1.0252 34 1 5.9654 1.8325 -0.5159 35 1 5.7992 3.6048 -0.5167 36 1 1.5762 5.5317 -0.0010 37 1 -1.8306 8.0327 0.5416 38 1 -2.4344 4.5909 -1.9610 39 1 -4.8161 3.9653 -1.9546 40 1 -6.2167 4.4717 0.0064 41 1 -5.2341 5.5973 1.9635 42 1 -2.8505 6.2152 1.9605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361360446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:37 Heat of formation + Delta-G solvation = -7.411180 kcal Electronic energy + Delta-G solvation = -27601.095972 eV Core-core repulsion = 23739.399874 eV Total energy + Delta-G solvation = -3861.696098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53442 -41.07304 -39.79985 -39.29133 -36.17704 -35.95548 -34.66518 -32.79674 -32.33430 -31.67661 -29.85802 -29.17698 -27.82946 -25.99167 -24.91264 -23.98119 -23.30570 -22.44758 -21.29364 -20.09528 -19.20848 -18.65075 -17.91426 -17.55305 -17.38896 -17.32458 -16.44932 -16.38384 -15.91344 -15.86588 -15.65950 -15.47451 -15.14718 -14.90676 -14.37079 -14.24199 -14.09830 -13.90249 -13.77390 -13.29192 -13.13340 -13.00543 -12.95135 -12.79012 -12.61714 -12.10486 -11.98533 -11.94608 -11.81950 -11.53104 -10.99226 -10.96724 -10.84458 -10.63710 -10.22054 -9.68962 -9.61627 -9.40156 -8.66360 -6.44977 -0.15027 0.11460 0.60873 0.65363 1.51182 1.56599 1.60709 1.67904 1.81197 1.89725 2.53945 2.76075 2.92256 3.03233 3.14878 3.45775 3.79927 4.04961 4.11908 4.17092 4.23485 4.29341 4.29589 4.30569 4.34740 4.36288 4.58023 4.65901 4.79068 4.79681 4.82993 4.85892 4.87500 5.19198 5.21078 5.27699 5.40505 5.62857 5.67302 5.68390 5.74308 5.98587 6.02370 6.10803 6.12049 6.27388 6.49637 7.04985 7.22139 7.33134 8.71727 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.004661 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.817310 B = 6005.697335 C = 8012.183464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.301 6.301 3 C 0.361 3.639 4 C -0.275 4.275 5 C 0.220 3.780 6 C -0.096 4.096 7 N -0.582 5.582 8 C 0.563 3.437 9 N -0.630 5.630 10 C 0.530 3.470 11 O -0.508 6.508 12 C 0.053 3.947 13 H 0.054 0.946 14 C -0.595 4.595 15 H 0.046 0.954 16 C -0.003 4.003 17 N -0.915 5.915 18 Si 1.106 2.894 19 H -0.283 1.283 20 H -0.265 1.265 21 H -0.280 1.280 22 C -0.049 4.049 23 C -0.104 4.104 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.146 4.146 28 N -0.592 5.592 29 H 0.042 0.958 30 H 0.136 0.864 31 H 0.043 0.957 32 H 0.187 0.813 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.432 0.568 37 H 0.267 0.733 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.380 -12.621 1.119 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.205 6.205 3 C 0.174 3.826 4 C -0.299 4.299 5 C 0.076 3.924 6 C -0.153 4.153 7 N -0.309 5.309 8 C 0.207 3.793 9 N -0.279 5.279 10 C 0.318 3.682 11 O -0.379 6.379 12 C 0.031 3.969 13 H 0.072 0.928 14 C -0.632 4.632 15 H 0.065 0.935 16 C -0.206 4.206 17 N -0.550 5.550 18 Si 0.928 3.072 19 H -0.208 1.208 20 H -0.190 1.190 21 H -0.206 1.206 22 C -0.050 4.050 23 C -0.123 4.123 24 C -0.150 4.150 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.165 4.165 28 N -0.330 5.330 29 H 0.061 0.939 30 H 0.154 0.846 31 H 0.062 0.938 32 H 0.204 0.796 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.271 0.729 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.542 -11.304 0.601 13.074 hybrid contribution -0.062 -1.428 0.587 1.545 sum 6.480 -12.732 1.188 14.335 Atomic orbital electron populations 1.22946 0.75741 1.04409 1.01662 1.86194 1.24172 1.23288 1.86816 1.20451 0.90324 0.84563 0.87288 1.21911 0.91460 1.01663 1.14907 1.22110 0.98763 0.85866 0.85699 1.20928 0.83510 1.05534 1.05313 1.67822 1.02950 1.35696 1.24437 1.19294 0.85711 0.85255 0.89043 1.43411 1.06435 1.07349 1.70750 1.21571 0.81227 0.92012 0.73351 1.90642 1.71839 1.29799 1.45620 1.18065 0.88655 0.90232 0.99940 0.92770 1.21614 1.49888 0.94152 0.97588 0.93538 1.26989 0.93570 0.96954 1.03063 1.70866 1.35145 1.39818 1.09163 0.83057 0.77284 0.74731 0.72096 1.20835 1.19007 1.20572 1.20065 0.96187 0.95079 0.93632 1.20795 0.95578 0.98578 0.97301 1.21341 0.93336 1.00777 0.99589 1.21327 1.00672 1.00122 0.93352 1.21324 0.94371 0.99073 0.99571 1.21159 0.95528 1.02049 0.97723 1.67952 1.41210 0.98188 1.25643 0.93904 0.84642 0.93771 0.79598 0.87668 0.86854 0.89746 0.72865 0.92253 0.89043 0.84550 0.83199 0.83874 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.33 10.41 113.37 1.18 2.51 16 2 O -0.30 -8.96 10.49 -88.19 -0.93 -9.89 16 3 C 0.36 11.96 7.53 84.85 0.64 12.60 16 4 C -0.28 -6.93 9.80 22.55 0.22 -6.71 16 5 C 0.22 5.59 6.81 42.46 0.29 5.88 16 6 C -0.10 -1.35 10.21 71.23 0.73 -0.62 16 7 N -0.58 -19.63 10.39 -185.96 -1.93 -21.56 16 8 C 0.56 22.45 8.38 261.31 2.19 24.64 16 9 N -0.63 -26.59 5.30 -313.71 -1.66 -28.25 16 10 C 0.53 24.96 7.01 87.66 0.61 25.57 16 11 O -0.51 -25.35 13.65 -2.96 -0.04 -25.39 16 12 C 0.05 2.57 1.92 -13.03 -0.03 2.55 16 13 H 0.05 2.76 6.82 -2.38 -0.02 2.74 16 14 C -0.60 -30.79 7.43 25.60 0.19 -30.60 16 15 H 0.05 2.47 7.82 -2.91 -0.02 2.45 16 16 C 0.00 -0.17 5.45 84.66 0.46 0.29 16 17 N -0.92 -51.15 13.56 21.45 0.29 -50.86 16 18 Si 1.11 47.16 29.91 68.60 2.05 49.21 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 C -0.05 -2.30 4.03 -19.86 -0.08 -2.38 16 23 C -0.10 -4.75 8.36 22.27 0.19 -4.57 16 24 C -0.13 -4.99 10.05 22.27 0.22 -4.76 16 25 C -0.14 -4.60 10.05 22.27 0.22 -4.37 16 26 C -0.13 -4.50 10.05 22.27 0.22 -4.27 16 27 C -0.15 -6.27 9.25 22.27 0.21 -6.07 16 28 N -0.59 -23.88 6.81 -310.57 -2.12 -26.00 16 29 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 30 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.04 1.41 8.12 -2.38 -0.02 1.39 16 32 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 0.92 8.09 -2.39 -0.02 0.90 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.43 17.14 8.70 -92.70 -0.81 16.33 16 37 H 0.27 14.93 6.30 -92.71 -0.58 14.35 16 38 H 0.09 4.42 7.86 -2.91 -0.02 4.40 16 39 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 42 H 0.11 4.55 7.96 -2.91 -0.02 4.53 16 Total: -1.00 -70.18 364.60 3.57 -66.61 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: 0.43 Total: 36.45 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.47 Total: 9.68 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.42 Total: -126.67 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.97 Total: -35.28 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.05 Total: 49.21 kcal Total: -70.18 3.57 -66.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361360446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.196 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds