Wall clock time and date at job start Tue Mar 31 2020 15:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34481 * 126.83274 * 2 1 4 4 N 1.36462 * 108.86705 * 179.97438 * 3 2 1 5 5 H 0.96991 * 124.85250 * 179.97438 * 4 3 2 6 6 C 1.34665 * 110.29463 * 359.97438 * 4 3 2 7 7 C 1.50699 * 125.80072 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47255 * 265.02542 * 7 6 4 9 9 N 1.34780 * 120.00021 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99934 * 0.02562 * 8 7 6 11 11 C 1.36806 * 108.39136 * 0.02562 * 6 4 3 12 12 C 1.47220 * 126.94050 * 180.02562 * 11 6 4 13 13 O 1.21636 * 119.99928 * 269.97974 * 12 11 6 14 14 N 1.34771 * 120.00188 * 89.98023 * 12 11 6 15 15 C 1.39150 * 120.00146 * 176.68970 * 14 12 11 16 16 C 1.39503 * 119.83663 * 217.56134 * 15 14 12 17 17 C 1.36359 * 120.16763 * 179.71535 * 16 15 14 18 18 C 1.40874 * 119.83030 * 0.55195 * 17 16 15 19 19 C 1.41135 * 120.16351 * 179.70221 * 18 17 16 20 20 H 1.07998 * 120.00282 * 157.91515 * 19 18 17 21 21 C 1.39905 * 120.00273 * 337.90771 * 19 18 17 22 22 N 1.30878 * 119.99413 * 327.62564 * 21 19 18 23 23 Si 1.86801 * 120.00325 * 147.61716 * 21 19 18 24 24 H 1.48503 * 109.46849 * 94.99092 * 23 21 19 25 25 H 1.48496 * 109.46982 * 214.99160 * 23 21 19 26 26 H 1.48495 * 109.46840 * 334.99442 * 23 21 19 27 27 C 1.40876 * 119.67577 * 359.71900 * 18 17 16 28 28 C 1.36359 * 119.83186 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.46832 * 89.98351 * 1 2 3 30 30 H 1.08997 * 109.47136 * 209.97592 * 1 2 3 31 31 H 1.08996 * 109.47256 * 329.98407 * 1 2 3 32 32 H 1.07998 * 125.57187 * 359.72687 * 3 2 1 33 33 H 1.09000 * 109.47092 * 25.03043 * 7 6 4 34 34 H 1.09002 * 109.47315 * 145.02565 * 7 6 4 35 35 H 0.96995 * 119.99762 * 0.02562 * 9 8 7 36 36 H 0.96996 * 119.99916 * 179.97438 * 9 8 7 37 37 H 0.97001 * 120.00466 * 356.68347 * 14 12 11 38 38 H 1.08006 * 119.91435 * 359.97438 * 16 15 14 39 39 H 1.08003 * 120.08773 * 180.27021 * 17 16 15 40 40 H 0.97010 * 119.99496 * 179.97438 * 22 21 19 41 41 H 1.07999 * 120.08625 * 179.97438 * 27 18 17 42 42 H 1.08004 * 119.91895 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0764 0.0000 4 7 3.6112 0.6555 0.0006 5 1 4.3840 1.2416 0.0003 6 6 3.6660 -0.6901 0.0015 7 6 4.9230 -1.5212 0.0018 8 6 5.2738 -1.9021 -1.4134 9 7 6.3676 -2.6505 -1.6585 10 8 4.5723 -1.5343 -2.3320 11 6 2.3864 -1.1741 0.0010 12 6 1.9752 -2.5877 0.0022 13 8 1.8058 -3.1727 -1.0507 14 7 1.7863 -3.2336 1.1699 15 6 1.3313 -4.5486 1.1720 16 6 0.4334 -4.9708 2.1526 17 6 -0.0213 -6.2563 2.1576 18 6 0.4269 -7.1620 1.1760 19 6 -0.0343 -8.4959 1.1783 20 1 0.0044 -9.0822 0.2722 21 6 -0.5417 -9.0586 2.3544 22 7 -0.0618 -8.6915 3.5154 23 14 -1.9041 -10.3337 2.2678 24 1 -1.3105 -11.6947 2.2925 25 1 -2.8116 -10.1682 3.4314 26 1 -2.6730 -10.1517 1.0105 27 6 1.3381 -6.7299 0.1923 28 6 1.7800 -5.4399 0.1969 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5141 32 1 1.9867 2.1058 -0.0042 33 1 5.7397 -0.9446 0.4360 34 1 4.7618 -2.4236 0.5916 35 1 6.9288 -2.9442 -0.9239 36 1 6.5932 -2.8959 -2.5694 37 1 1.9677 -2.7819 2.0089 38 1 0.0944 -4.2766 2.9073 39 1 -0.7198 -6.5807 2.9148 40 1 -0.4138 -9.0815 4.3309 41 1 1.6863 -7.4187 -0.5630 42 1 2.4789 -5.1072 -0.5563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362019025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:57 Heat of formation + Delta-G solvation = -13.940683 kcal Electronic energy + Delta-G solvation = -26964.293238 eV Core-core repulsion = 23102.313999 eV Total energy + Delta-G solvation = -3861.979239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.34246 -39.22109 -39.03902 -37.00238 -34.27805 -33.78017 -32.94509 -32.77464 -31.60202 -29.50074 -29.10915 -28.07806 -25.95808 -24.98811 -22.67455 -21.35964 -21.02699 -20.31207 -19.39638 -18.82656 -18.01563 -17.31150 -17.10904 -16.73627 -16.35899 -15.86867 -15.16735 -15.14841 -14.43957 -14.26285 -13.96589 -13.70028 -13.55764 -13.29790 -13.15899 -12.81355 -12.60633 -12.55266 -12.48757 -12.08239 -12.01977 -11.91632 -11.42317 -11.13438 -11.09529 -10.89825 -10.48464 -10.10378 -10.09115 -9.78101 -9.64553 -9.34315 -8.99653 -8.59739 -8.41713 -8.09839 -7.48116 -7.07621 -6.82259 -4.21458 2.06689 2.56703 2.64579 2.68977 3.02396 3.08156 3.12608 3.16393 3.18250 3.46538 3.54110 3.93178 4.12446 4.42852 4.56270 4.74652 4.89811 5.05914 5.21253 5.35344 5.45874 5.63580 5.76946 5.88756 5.99245 6.15245 6.26978 6.28363 6.50147 6.65787 6.85910 6.86318 6.99241 7.04924 7.07460 7.17047 7.22476 7.37259 7.48197 7.63658 7.80900 7.99019 8.08620 8.17878 8.32024 8.44644 8.61331 8.89615 8.93555 9.13073 10.06899 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.002959 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.124263 B = 9461.936208 C =10389.550616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.130 4.130 3 C -0.012 4.012 4 N -0.548 5.548 5 H 0.412 0.588 6 C 0.075 3.925 7 C -0.079 4.079 8 C 0.514 3.486 9 N -0.858 5.858 10 O -0.517 6.517 11 C -0.184 4.184 12 C 0.573 3.427 13 O -0.521 6.521 14 N -0.646 5.646 15 C -0.016 4.016 16 C -0.103 4.103 17 C -0.171 4.171 18 C 0.113 3.887 19 C -0.467 4.467 20 H 0.081 0.919 21 C 0.089 3.911 22 N -0.771 5.771 23 Si 0.894 3.106 24 H -0.270 1.270 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.223 4.223 28 C -0.067 4.067 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.400 0.600 36 H 0.402 0.598 37 H 0.393 0.607 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.282 0.718 41 H 0.093 0.907 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 16.672 0.315 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C -0.140 4.140 4 N -0.142 5.142 5 H 0.247 0.753 6 C -0.040 4.040 7 C -0.120 4.120 8 C 0.297 3.703 9 N -0.423 5.423 10 O -0.390 6.390 11 C -0.194 4.194 12 C 0.359 3.641 13 O -0.397 6.397 14 N -0.289 5.289 15 C -0.108 4.108 16 C -0.123 4.123 17 C -0.190 4.190 18 C 0.110 3.890 19 C -0.495 4.495 20 H 0.099 0.901 21 C -0.132 4.132 22 N -0.394 5.394 23 Si 0.718 3.282 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.243 4.243 28 C -0.087 4.087 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.185 0.815 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.228 0.772 36 H 0.233 0.767 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.029 16.660 -0.666 19.457 hybrid contribution 0.273 -0.355 0.534 0.697 sum 10.302 16.305 -0.132 19.287 Atomic orbital electron populations 1.20137 0.89644 1.02113 1.02006 1.20431 0.95208 0.90439 1.07656 1.21390 0.82167 0.98850 1.11626 1.41186 1.08080 1.05630 1.59309 0.75260 1.19115 0.93928 0.83155 1.07847 1.20204 0.94911 1.01116 0.95759 1.20414 0.80380 0.78228 0.91231 1.43803 1.28946 1.56717 1.12816 1.90833 1.49053 1.53095 1.46051 1.20139 0.92144 0.93026 1.14137 1.17477 0.77982 0.84621 0.84029 1.90800 1.49963 1.67497 1.31433 1.42990 1.65409 1.12792 1.07745 1.17081 1.06836 0.83138 1.03773 1.20181 0.97391 0.96566 0.98126 1.20610 1.04035 0.92059 1.02328 1.17574 0.88334 0.92985 0.90120 1.19488 1.36355 0.97462 0.96208 0.90099 1.25919 0.95686 0.96946 0.94691 1.69956 1.33318 1.36903 0.99242 0.86534 0.81644 0.80527 0.79506 1.19531 1.19924 1.18108 1.20593 1.04317 0.95414 1.04016 1.20297 0.98828 0.92607 0.96965 0.91682 0.91643 0.91959 0.81534 0.87876 0.86425 0.77176 0.76690 0.77334 0.89276 0.87544 0.90703 0.88862 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.35 36.00 0.37 -0.69 16 2 C -0.13 -1.86 6.36 -102.54 -0.65 -2.51 16 3 C -0.01 -0.13 11.82 -16.82 -0.20 -0.33 16 4 N -0.55 -5.48 5.90 -9.10 -0.05 -5.54 16 5 H 0.41 2.58 8.96 -40.82 -0.37 2.22 16 6 C 0.08 0.97 5.67 -81.87 -0.46 0.51 16 7 C -0.08 -0.81 6.01 -29.04 -0.17 -0.98 16 8 C 0.51 6.58 8.09 -10.98 -0.09 6.49 16 9 N -0.86 -7.29 8.87 31.22 0.28 -7.01 16 10 O -0.52 -9.42 16.87 5.55 0.09 -9.32 16 11 C -0.18 -3.01 6.05 -103.35 -0.62 -3.63 16 12 C 0.57 11.48 7.11 -12.61 -0.09 11.39 16 13 O -0.52 -12.92 14.72 5.25 0.08 -12.84 16 14 N -0.65 -12.33 5.29 -10.77 -0.06 -12.38 16 15 C -0.02 -0.37 6.25 -83.59 -0.52 -0.90 16 16 C -0.10 -2.40 9.90 -39.79 -0.39 -2.79 16 17 C -0.17 -4.43 8.74 -39.26 -0.34 -4.77 16 18 C 0.11 3.06 5.57 -106.80 -0.59 2.47 16 19 C -0.47 -12.54 8.94 -37.86 -0.34 -12.88 16 20 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 21 C 0.09 2.22 4.77 -17.33 -0.08 2.14 16 22 N -0.77 -19.59 11.78 55.55 0.65 -18.93 16 23 Si 0.89 18.45 29.66 -169.99 -5.04 13.40 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 27 C -0.22 -5.84 9.74 -39.26 -0.38 -6.22 16 28 C -0.07 -1.67 8.59 -39.78 -0.34 -2.02 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.40 2.00 8.83 -40.82 -0.36 1.64 16 36 H 0.40 3.23 8.93 -40.82 -0.36 2.86 16 37 H 0.39 6.18 8.81 -40.82 -0.36 5.83 16 38 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.11 2.79 6.53 -52.48 -0.34 2.45 16 40 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 41 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.10 2.51 6.45 -52.48 -0.34 2.17 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -37.27 367.98 -8.49 -45.76 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -5.06 Total: 16.05 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -4.92 Total: -14.73 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.82 Total: -43.86 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.27 -8.49 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362019025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.820 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds