Wall clock time and date at job start Tue Mar 31 2020 15:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34481 * 126.83274 * 2 1 4 4 N 1.36462 * 108.86705 * 179.97438 * 3 2 1 5 5 H 0.96991 * 124.85250 * 179.97438 * 4 3 2 6 6 C 1.34665 * 110.29463 * 359.97438 * 4 3 2 7 7 C 1.50699 * 125.80072 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47255 * 265.02542 * 7 6 4 9 9 N 1.34780 * 120.00021 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99934 * 0.02562 * 8 7 6 11 11 C 1.36806 * 108.39136 * 0.02562 * 6 4 3 12 12 C 1.47220 * 126.94050 * 180.02562 * 11 6 4 13 13 O 1.21636 * 119.99928 * 269.97974 * 12 11 6 14 14 N 1.34771 * 120.00188 * 89.98023 * 12 11 6 15 15 C 1.39150 * 120.00146 * 176.68970 * 14 12 11 16 16 C 1.39503 * 119.83663 * 217.56134 * 15 14 12 17 17 C 1.36359 * 120.16763 * 179.71535 * 16 15 14 18 18 C 1.40874 * 119.83030 * 0.55195 * 17 16 15 19 19 C 1.41135 * 120.16351 * 179.70221 * 18 17 16 20 20 H 1.07998 * 120.00282 * 157.91515 * 19 18 17 21 21 C 1.39905 * 120.00273 * 337.90771 * 19 18 17 22 22 N 1.30878 * 119.99413 * 327.62564 * 21 19 18 23 23 Si 1.86801 * 120.00325 * 147.61716 * 21 19 18 24 24 H 1.48503 * 109.46849 * 94.99092 * 23 21 19 25 25 H 1.48496 * 109.46982 * 214.99160 * 23 21 19 26 26 H 1.48495 * 109.46840 * 334.99442 * 23 21 19 27 27 C 1.40876 * 119.67577 * 359.71900 * 18 17 16 28 28 C 1.36359 * 119.83186 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.46832 * 89.98351 * 1 2 3 30 30 H 1.08997 * 109.47136 * 209.97592 * 1 2 3 31 31 H 1.08996 * 109.47256 * 329.98407 * 1 2 3 32 32 H 1.07998 * 125.57187 * 359.72687 * 3 2 1 33 33 H 1.09000 * 109.47092 * 25.03043 * 7 6 4 34 34 H 1.09002 * 109.47315 * 145.02565 * 7 6 4 35 35 H 0.96995 * 119.99762 * 0.02562 * 9 8 7 36 36 H 0.96996 * 119.99916 * 179.97438 * 9 8 7 37 37 H 0.97001 * 120.00466 * 356.68347 * 14 12 11 38 38 H 1.08006 * 119.91435 * 359.97438 * 16 15 14 39 39 H 1.08003 * 120.08773 * 180.27021 * 17 16 15 40 40 H 0.97010 * 119.99496 * 179.97438 * 22 21 19 41 41 H 1.07999 * 120.08625 * 179.97438 * 27 18 17 42 42 H 1.08004 * 119.91895 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0764 0.0000 4 7 3.6112 0.6555 0.0006 5 1 4.3840 1.2416 0.0003 6 6 3.6660 -0.6901 0.0015 7 6 4.9230 -1.5212 0.0018 8 6 5.2738 -1.9021 -1.4134 9 7 6.3676 -2.6505 -1.6585 10 8 4.5723 -1.5343 -2.3320 11 6 2.3864 -1.1741 0.0010 12 6 1.9752 -2.5877 0.0022 13 8 1.8058 -3.1727 -1.0507 14 7 1.7863 -3.2336 1.1699 15 6 1.3313 -4.5486 1.1720 16 6 0.4334 -4.9708 2.1526 17 6 -0.0213 -6.2563 2.1576 18 6 0.4269 -7.1620 1.1760 19 6 -0.0343 -8.4959 1.1783 20 1 0.0044 -9.0822 0.2722 21 6 -0.5417 -9.0586 2.3544 22 7 -0.0618 -8.6915 3.5154 23 14 -1.9041 -10.3337 2.2678 24 1 -1.3105 -11.6947 2.2925 25 1 -2.8116 -10.1682 3.4314 26 1 -2.6730 -10.1517 1.0105 27 6 1.3381 -6.7299 0.1923 28 6 1.7800 -5.4399 0.1969 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5141 32 1 1.9867 2.1058 -0.0042 33 1 5.7397 -0.9446 0.4360 34 1 4.7618 -2.4236 0.5916 35 1 6.9288 -2.9442 -0.9239 36 1 6.5932 -2.8959 -2.5694 37 1 1.9677 -2.7819 2.0089 38 1 0.0944 -4.2766 2.9073 39 1 -0.7198 -6.5807 2.9148 40 1 -0.4138 -9.0815 4.3309 41 1 1.6863 -7.4187 -0.5630 42 1 2.4789 -5.1072 -0.5563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362019025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:56 Heat of formation + Delta-G solvation = -42.510885 kcal Electronic energy + Delta-G solvation = -26965.532135 eV Core-core repulsion = 23102.313999 eV Total energy + Delta-G solvation = -3863.218136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.33855 -40.74518 -40.19143 -38.87352 -36.12341 -34.75655 -34.71897 -33.73064 -32.61730 -31.45844 -30.89085 -29.25333 -27.02728 -26.65330 -24.20135 -23.11571 -22.29869 -21.91137 -20.34885 -20.28486 -19.27713 -18.92226 -18.10385 -17.99856 -17.57978 -17.29259 -16.99647 -16.21430 -15.89756 -15.71956 -15.37953 -15.16045 -14.84281 -14.56145 -14.44534 -14.18736 -14.08101 -13.94318 -13.78034 -13.53652 -13.42463 -13.29989 -13.01838 -12.83687 -12.67605 -12.34813 -12.16127 -11.91161 -11.57626 -11.16025 -11.13882 -10.80084 -10.66633 -10.45935 -9.50292 -9.44799 -9.04255 -8.99266 -8.71799 -6.22659 0.83020 1.08791 1.13784 1.37772 1.43532 1.55561 1.61775 1.66812 1.81974 2.20784 2.23919 2.61532 2.71820 2.74763 3.55988 3.70535 4.00775 4.12717 4.19965 4.27791 4.38733 4.41419 4.48632 4.56506 4.69918 4.87161 4.90268 5.00816 5.11603 5.14474 5.16661 5.27835 5.32640 5.46408 5.64554 5.83970 5.87284 5.89903 6.03293 6.04070 6.10865 6.35951 6.43268 6.61806 6.75353 6.80910 6.89413 6.99599 7.34266 7.49804 8.21229 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.002959 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.124263 B = 9461.936208 C =10389.550616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.168 4.168 3 C 0.014 3.986 4 N -0.528 5.528 5 H 0.434 0.566 6 C 0.084 3.916 7 C -0.079 4.079 8 C 0.507 3.493 9 N -0.838 5.838 10 O -0.581 6.581 11 C -0.233 4.233 12 C 0.581 3.419 13 O -0.578 6.578 14 N -0.634 5.634 15 C -0.007 4.007 16 C -0.098 4.098 17 C -0.187 4.187 18 C 0.086 3.914 19 C -0.506 4.506 20 H 0.074 0.926 21 C 0.054 3.946 22 N -0.796 5.796 23 Si 0.971 3.029 24 H -0.259 1.259 25 H -0.259 1.259 26 H -0.264 1.264 27 C -0.245 4.245 28 C -0.075 4.075 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.211 0.789 33 H 0.158 0.842 34 H 0.117 0.883 35 H 0.419 0.581 36 H 0.406 0.594 37 H 0.413 0.587 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.295 0.705 41 H 0.090 0.910 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 18.863 2.074 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.174 4.174 3 C -0.116 4.116 4 N -0.124 5.124 5 H 0.274 0.726 6 C -0.033 4.033 7 C -0.119 4.119 8 C 0.292 3.708 9 N -0.403 5.403 10 O -0.460 6.460 11 C -0.244 4.244 12 C 0.369 3.631 13 O -0.457 6.457 14 N -0.278 5.278 15 C -0.100 4.100 16 C -0.118 4.118 17 C -0.207 4.207 18 C 0.083 3.917 19 C -0.533 4.533 20 H 0.092 0.908 21 C -0.166 4.166 22 N -0.419 5.419 23 Si 0.791 3.209 24 H -0.183 1.183 25 H -0.183 1.183 26 H -0.188 1.188 27 C -0.266 4.266 28 C -0.095 4.095 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.227 0.773 33 H 0.175 0.825 34 H 0.135 0.865 35 H 0.251 0.749 36 H 0.237 0.763 37 H 0.249 0.751 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.990 18.878 1.162 21.875 hybrid contribution 0.142 -0.934 -0.013 0.945 sum 11.132 17.944 1.149 21.148 Atomic orbital electron populations 1.20107 0.89629 1.02507 1.01320 1.20677 0.95786 0.90762 1.10159 1.21953 0.81661 0.99780 1.08162 1.41209 1.08947 1.04858 1.57373 0.72623 1.19325 0.93623 0.84512 1.05888 1.20356 0.95654 1.01638 0.94281 1.20908 0.80366 0.77899 0.91651 1.43678 1.27830 1.54916 1.13879 1.90810 1.51289 1.55918 1.47982 1.19995 0.94600 0.91190 1.18591 1.18058 0.76096 0.85986 0.82933 1.90765 1.52359 1.69225 1.33393 1.42894 1.64825 1.11255 1.08855 1.17153 1.05771 0.84557 1.02539 1.20434 0.96559 0.96249 0.98593 1.20640 1.04701 0.93025 1.02338 1.17874 0.88994 0.93866 0.90936 1.19693 1.38792 0.97827 0.97024 0.90832 1.26703 0.97215 0.98997 0.93704 1.69941 1.34043 1.37899 1.00062 0.85380 0.78123 0.77915 0.79474 1.18306 1.18341 1.18770 1.20701 1.05171 0.96149 1.04529 1.20344 0.99035 0.92637 0.97479 0.92954 0.94178 0.88578 0.77252 0.82472 0.86465 0.74917 0.76347 0.75080 0.85974 0.88177 0.89422 0.89164 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.00 10.35 71.23 0.74 -1.26 16 2 C -0.17 -4.52 6.36 -18.52 -0.12 -4.64 16 3 C 0.01 0.25 11.82 83.11 0.98 1.23 16 4 N -0.53 -8.64 5.90 -182.69 -1.08 -9.71 16 5 H 0.43 3.39 8.96 -92.71 -0.83 2.56 16 6 C 0.08 2.00 5.67 41.79 0.24 2.24 16 7 C -0.08 -1.42 6.01 29.10 0.17 -1.24 16 8 C 0.51 12.46 8.09 87.66 0.71 13.17 16 9 N -0.84 -13.08 8.87 -173.52 -1.54 -14.62 16 10 O -0.58 -21.43 16.87 -3.05 -0.05 -21.48 16 11 C -0.23 -7.51 6.05 -19.04 -0.12 -7.63 16 12 C 0.58 23.79 7.11 86.60 0.62 24.40 16 13 O -0.58 -30.04 14.72 -4.14 -0.06 -30.10 16 14 N -0.63 -24.26 5.29 -306.22 -1.62 -25.88 16 15 C -0.01 -0.33 6.25 38.59 0.24 -0.09 16 16 C -0.10 -4.62 9.90 22.14 0.22 -4.41 16 17 C -0.19 -9.97 8.74 22.48 0.20 -9.77 16 18 C 0.09 4.88 5.57 -21.28 -0.12 4.76 16 19 C -0.51 -28.22 8.94 23.39 0.21 -28.01 16 20 H 0.07 4.05 8.02 -2.91 -0.02 4.02 16 21 C 0.05 2.70 4.77 85.24 0.41 3.11 16 22 N -0.80 -40.67 11.78 21.82 0.26 -40.41 16 23 Si 0.97 37.94 29.66 68.60 2.03 39.97 16 24 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 25 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 27 C -0.25 -13.55 9.74 22.48 0.22 -13.34 16 28 C -0.07 -3.90 8.59 22.14 0.19 -3.71 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.12 2.17 8.05 -2.39 -0.02 2.15 16 35 H 0.42 3.24 8.83 -92.71 -0.82 2.42 16 36 H 0.41 6.18 8.93 -92.71 -0.83 5.35 16 37 H 0.41 12.57 8.81 -92.71 -0.82 11.76 16 38 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.10 5.37 6.53 -2.91 -0.02 5.35 16 40 H 0.29 13.31 8.30 -92.70 -0.77 12.54 16 41 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.09 4.97 6.45 -2.91 -0.02 4.95 16 Total: -1.00 -87.54 367.98 0.56 -86.98 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: -2.17 Total: 40.44 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 4.79 Total: -25.19 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -3.98 Total: -90.63 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.11 Total: -51.58 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -87.54 0.56 -86.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362019025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.474 kcal (2) G-P(sol) polarization free energy of solvation -87.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds