Wall clock time and date at job start Tue Mar 31 2020 15:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29947 * 126.28676 * 2 1 4 4 O 1.21307 * 110.24794 * 180.02562 * 3 2 1 5 5 C 1.33638 * 109.81235 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.54920 * 179.97438 * 5 4 3 7 7 C 1.53491 * 114.20824 * 300.03108 * 6 5 4 8 8 N 1.47061 * 87.98610 * 139.84868 * 7 6 5 9 9 C 1.34786 * 136.05552 * 152.61837 * 8 7 6 10 10 O 1.21274 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99920 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.47252 * 300.00088 * 11 9 8 13 13 C 1.50705 * 109.46820 * 59.99991 * 11 9 8 14 14 H 1.08002 * 119.99908 * 235.35211 * 13 11 9 15 15 C 1.37872 * 120.00025 * 55.35429 * 13 11 9 16 16 N 1.31518 * 120.00415 * 1.98563 * 15 13 11 17 17 Si 1.86802 * 120.00131 * 181.97815 * 15 13 11 18 18 H 1.48503 * 109.46755 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46953 * 120.00119 * 17 15 13 20 20 H 1.48497 * 109.47396 * 240.00216 * 17 15 13 21 21 C 1.50696 * 109.46925 * 179.97438 * 11 9 8 22 22 C 1.38242 * 119.99716 * 226.93330 * 21 11 9 23 23 C 1.38235 * 119.99489 * 179.79067 * 22 21 11 24 24 C 1.38230 * 120.00285 * 0.44207 * 23 22 21 25 25 C 1.38238 * 120.00089 * 359.80667 * 24 23 22 26 26 C 1.38229 * 120.00260 * 47.20747 * 21 11 9 27 27 C 1.47064 * 87.88690 * 332.87786 * 8 7 6 28 28 N 1.31134 * 106.89974 * 0.23062 * 5 4 3 29 29 H 1.08998 * 109.46838 * 89.97870 * 1 2 3 30 30 H 1.08997 * 109.46747 * 209.97282 * 1 2 3 31 31 H 1.08992 * 109.46815 * 329.97186 * 1 2 3 32 32 H 1.09000 * 113.28005 * 166.96057 * 6 5 4 33 33 H 1.08998 * 113.47091 * 25.06427 * 7 6 5 34 34 H 1.09000 * 113.51976 * 254.63912 * 7 6 5 35 35 H 0.96999 * 120.00375 * 180.02562 * 16 15 13 36 36 H 1.07994 * 120.00067 * 0.02562 * 22 21 11 37 37 H 1.07997 * 119.99795 * 180.27657 * 23 22 21 38 38 H 1.08004 * 120.00130 * 179.83635 * 24 23 22 39 39 H 1.07994 * 120.00101 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.99808 * 359.97438 * 26 21 11 41 41 H 1.09001 * 113.46484 * 141.90039 * 27 8 7 42 42 H 1.09002 * 113.46785 * 272.33929 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7970 -1.4370 -0.0014 7 6 5.7043 -1.1889 -1.2142 8 7 6.8554 -1.2557 -0.3014 9 6 8.1569 -1.5910 -0.4036 10 8 8.6099 -1.9445 -1.4716 11 6 9.0489 -1.5276 0.8094 12 1 9.0691 -0.5075 1.1927 13 6 8.5168 -2.4533 1.8730 14 1 8.2986 -2.0731 2.8600 15 6 8.3087 -3.7857 1.5860 16 7 8.6111 -4.2572 0.3961 17 14 7.5973 -4.9214 2.8874 18 1 7.3444 -4.1513 4.1317 19 1 6.3210 -5.4996 2.3956 20 1 8.5604 -6.0160 3.1692 21 6 10.4446 -1.9497 0.4292 22 6 11.1310 -2.8560 1.2156 23 6 12.4097 -3.2465 0.8644 24 6 13.0055 -2.7237 -0.2681 25 6 12.3211 -1.8134 -1.0517 26 6 11.0408 -1.4263 -0.7028 27 6 5.9601 -0.8021 0.7735 28 7 2.3030 -1.0841 -0.0047 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 4.6314 -2.4903 0.2249 33 1 5.5655 -0.2070 -1.6666 34 1 5.6831 -1.9966 -1.9459 35 1 8.4643 -5.1945 0.1940 36 1 10.6668 -3.2619 2.1022 37 1 12.9443 -3.9579 1.4762 38 1 14.0056 -3.0267 -0.5411 39 1 12.7867 -1.4047 -1.9362 40 1 10.5060 -0.7152 -1.3150 41 1 6.1557 -1.2816 1.7326 42 1 5.8894 0.2829 0.8506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362496779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:39 Heat of formation + Delta-G solvation = 106.387512 kcal Electronic energy + Delta-G solvation = -27616.217388 eV Core-core repulsion = 23759.455971 eV Total energy + Delta-G solvation = -3856.761417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.61337 -39.85478 -38.37279 -36.63934 -36.09509 -33.67977 -33.08390 -30.87457 -29.74043 -29.65343 -28.96512 -27.21507 -25.62058 -24.48320 -23.69265 -23.15819 -21.30288 -20.75999 -20.03395 -18.35079 -18.14724 -17.46244 -16.91172 -16.19900 -15.77384 -15.40839 -14.97195 -14.75308 -14.23828 -13.92057 -13.77071 -13.68195 -13.47345 -13.03917 -12.93203 -12.56058 -12.45105 -12.33670 -12.21983 -12.11001 -12.00232 -11.59747 -11.51964 -11.30767 -11.05648 -11.04285 -10.78700 -10.69977 -10.49048 -10.07867 -9.75579 -9.72051 -9.42623 -8.77824 -8.43692 -7.92565 -7.72133 -7.43741 -6.19197 -4.35085 1.07240 2.14480 2.50340 2.58793 2.70993 3.14936 3.26800 3.26913 3.48072 3.70187 3.92750 4.07354 4.25995 4.41099 4.85836 4.90964 5.01563 5.11034 5.15582 5.19854 5.40107 5.45425 5.58285 5.71109 5.78035 5.84163 5.92664 5.93802 5.95903 6.04000 6.13779 6.29417 6.38437 6.61432 6.64873 6.80811 6.92911 7.10198 7.19145 7.52701 7.61406 7.64139 7.74158 8.12143 8.13079 8.23140 8.56771 8.73482 9.30671 9.49688 10.81424 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003570 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.977190 B = 7841.872303 C = 8944.170473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.390 5.390 4 O 0.078 5.922 5 C 0.210 3.790 6 C -0.048 4.048 7 C 0.118 3.882 8 N -0.637 5.637 9 C 0.585 3.415 10 O -0.537 6.537 11 C 0.064 3.936 12 H 0.058 0.942 13 C -0.537 4.537 14 H 0.069 0.931 15 C 0.075 3.925 16 N -0.841 5.841 17 Si 0.882 3.118 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.017 4.017 22 C -0.064 4.064 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.102 4.102 27 C 0.121 3.879 28 N -0.484 5.484 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 6.732 0.705 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 N -0.100 5.100 4 O 0.021 5.979 5 C -0.011 4.011 6 C -0.069 4.069 7 C -0.007 4.007 8 N -0.374 5.374 9 C 0.378 3.622 10 O -0.412 6.412 11 C 0.043 3.957 12 H 0.076 0.924 13 C -0.575 4.575 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.474 5.474 17 Si 0.709 3.291 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.018 4.018 22 C -0.081 4.081 23 C -0.165 4.165 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.120 4.120 27 C -0.004 4.004 28 N -0.218 5.218 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.508 6.791 -0.046 10.886 hybrid contribution -0.466 -1.082 0.468 1.268 sum -8.974 5.708 0.422 10.644 Atomic orbital electron populations 1.20111 0.83112 1.04545 1.04159 1.25910 1.00555 0.83711 1.00664 1.74634 0.89451 1.23935 1.21952 1.85277 1.22208 1.24757 1.65692 1.28561 0.96345 0.81827 0.94332 1.21997 0.83677 0.99201 1.02003 1.22726 0.82879 1.01935 0.93157 1.49240 1.07768 1.69623 1.10810 1.20894 0.78251 0.72598 0.90434 1.90574 1.72732 1.46692 1.31157 1.17823 0.88523 0.97400 0.91984 0.92360 1.20690 1.46957 0.92899 0.96936 0.91315 1.25041 0.94744 0.98188 0.95315 1.70069 1.43033 1.14903 1.19381 0.86677 0.79181 0.81216 0.82042 1.19391 1.20786 1.20731 1.19791 0.94615 0.94326 0.93032 1.21138 0.92237 0.94684 1.00080 1.20993 0.96514 1.01176 0.97837 1.20786 0.99129 0.99575 0.96700 1.20821 0.95726 1.00073 0.99558 1.20975 0.93962 1.00435 0.96602 1.22843 0.83382 0.98978 0.95220 1.71934 0.99735 1.29260 1.20833 0.89455 0.89084 0.89626 0.83543 0.90401 0.89860 0.92432 0.85378 0.87999 0.88169 0.88057 0.87541 0.87670 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.16 2.10 8.22 -156.37 -1.28 0.81 16 3 N -0.39 -5.41 12.16 30.90 0.38 -5.03 16 4 O 0.08 1.07 11.03 18.11 0.20 1.27 16 5 C 0.21 2.85 7.60 -13.05 -0.10 2.75 16 6 C -0.05 -0.65 4.63 -91.26 -0.42 -1.08 16 7 C 0.12 1.80 8.18 -8.52 -0.07 1.73 16 8 N -0.64 -11.89 3.64 -185.25 -0.67 -12.56 16 9 C 0.58 13.34 5.70 -10.98 -0.06 13.28 16 10 O -0.54 -14.01 14.73 5.56 0.08 -13.93 16 11 C 0.06 1.44 2.66 -94.07 -0.25 1.19 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.54 -12.31 5.90 -34.44 -0.20 -12.51 16 14 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.08 1.80 4.00 -17.82 -0.07 1.73 16 16 N -0.84 -22.01 10.89 55.43 0.60 -21.41 16 17 Si 0.88 18.87 29.54 -169.99 -5.02 13.85 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.02 -0.39 4.51 -104.63 -0.47 -0.86 16 22 C -0.06 -1.44 8.21 -39.58 -0.32 -1.76 16 23 C -0.15 -3.00 10.05 -39.59 -0.40 -3.40 16 24 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 25 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.10 -2.25 8.21 -39.59 -0.33 -2.58 16 27 C 0.12 1.78 7.68 -8.51 -0.07 1.71 16 28 N -0.48 -6.88 11.55 -9.86 -0.11 -6.99 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.15 2.09 8.14 -51.93 -0.42 1.66 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 2.98 6.04 -52.49 -0.32 2.66 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.34 7.01 -52.49 -0.37 1.97 16 41 H 0.11 1.63 7.14 -51.93 -0.37 1.26 16 42 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -30.23 356.31 -8.88 -39.11 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.23 Total: 5.92 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -4.47 Total: -5.60 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.19 Total: -45.99 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.28 Total: -12.66 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.23 -8.88 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362496779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.498 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds