Wall clock time and date at job start Tue Mar 31 2020 15:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29947 * 126.28676 * 2 1 4 4 O 1.21307 * 110.24794 * 180.02562 * 3 2 1 5 5 C 1.33638 * 109.81235 * 359.97438 * 4 3 2 6 6 C 1.50704 * 126.54920 * 179.97438 * 5 4 3 7 7 C 1.53491 * 114.20824 * 300.03108 * 6 5 4 8 8 N 1.47061 * 87.98610 * 139.84868 * 7 6 5 9 9 C 1.34786 * 136.05552 * 152.61837 * 8 7 6 10 10 O 1.21274 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99920 * 180.02562 * 9 8 7 12 12 H 1.08996 * 109.47252 * 300.00088 * 11 9 8 13 13 C 1.50705 * 109.46820 * 59.99991 * 11 9 8 14 14 H 1.08002 * 119.99908 * 235.35211 * 13 11 9 15 15 C 1.37872 * 120.00025 * 55.35429 * 13 11 9 16 16 N 1.31518 * 120.00415 * 1.98563 * 15 13 11 17 17 Si 1.86802 * 120.00131 * 181.97815 * 15 13 11 18 18 H 1.48503 * 109.46755 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46953 * 120.00119 * 17 15 13 20 20 H 1.48497 * 109.47396 * 240.00216 * 17 15 13 21 21 C 1.50696 * 109.46925 * 179.97438 * 11 9 8 22 22 C 1.38242 * 119.99716 * 226.93330 * 21 11 9 23 23 C 1.38235 * 119.99489 * 179.79067 * 22 21 11 24 24 C 1.38230 * 120.00285 * 0.44207 * 23 22 21 25 25 C 1.38238 * 120.00089 * 359.80667 * 24 23 22 26 26 C 1.38229 * 120.00260 * 47.20747 * 21 11 9 27 27 C 1.47064 * 87.88690 * 332.87786 * 8 7 6 28 28 N 1.31134 * 106.89974 * 0.23062 * 5 4 3 29 29 H 1.08998 * 109.46838 * 89.97870 * 1 2 3 30 30 H 1.08997 * 109.46747 * 209.97282 * 1 2 3 31 31 H 1.08992 * 109.46815 * 329.97186 * 1 2 3 32 32 H 1.09000 * 113.28005 * 166.96057 * 6 5 4 33 33 H 1.08998 * 113.47091 * 25.06427 * 7 6 5 34 34 H 1.09000 * 113.51976 * 254.63912 * 7 6 5 35 35 H 0.96999 * 120.00375 * 180.02562 * 16 15 13 36 36 H 1.07994 * 120.00067 * 0.02562 * 22 21 11 37 37 H 1.07997 * 119.99795 * 180.27657 * 23 22 21 38 38 H 1.08004 * 120.00130 * 179.83635 * 24 23 22 39 39 H 1.07994 * 120.00101 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.99808 * 359.97438 * 26 21 11 41 41 H 1.09001 * 113.46484 * 141.90039 * 27 8 7 42 42 H 1.09002 * 113.46785 * 272.33929 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7970 -1.4370 -0.0014 7 6 5.7043 -1.1889 -1.2142 8 7 6.8554 -1.2557 -0.3014 9 6 8.1569 -1.5910 -0.4036 10 8 8.6099 -1.9445 -1.4716 11 6 9.0489 -1.5276 0.8094 12 1 9.0691 -0.5075 1.1927 13 6 8.5168 -2.4533 1.8730 14 1 8.2986 -2.0731 2.8600 15 6 8.3087 -3.7857 1.5860 16 7 8.6111 -4.2572 0.3961 17 14 7.5973 -4.9214 2.8874 18 1 7.3444 -4.1513 4.1317 19 1 6.3210 -5.4996 2.3956 20 1 8.5604 -6.0160 3.1692 21 6 10.4446 -1.9497 0.4292 22 6 11.1310 -2.8560 1.2156 23 6 12.4097 -3.2465 0.8644 24 6 13.0055 -2.7237 -0.2681 25 6 12.3211 -1.8134 -1.0517 26 6 11.0408 -1.4263 -0.7028 27 6 5.9601 -0.8021 0.7735 28 7 2.3030 -1.0841 -0.0047 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 4.6314 -2.4903 0.2249 33 1 5.5655 -0.2070 -1.6666 34 1 5.6831 -1.9966 -1.9459 35 1 8.4643 -5.1945 0.1940 36 1 10.6668 -3.2619 2.1022 37 1 12.9443 -3.9579 1.4762 38 1 14.0056 -3.0267 -0.5411 39 1 12.7867 -1.4047 -1.9362 40 1 10.5060 -0.7152 -1.3150 41 1 6.1557 -1.2816 1.7326 42 1 5.8894 0.2829 0.8506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362496779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:38 Heat of formation + Delta-G solvation = 88.271991 kcal Electronic energy + Delta-G solvation = -27617.002936 eV Core-core repulsion = 23759.455971 eV Total energy + Delta-G solvation = -3857.546965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.65297 -41.30903 -39.94314 -38.29033 -37.11295 -35.46543 -34.16449 -32.62634 -31.34338 -30.91073 -29.97223 -28.81761 -26.91612 -26.02212 -25.05172 -24.32431 -22.94453 -22.14335 -21.41184 -19.84579 -19.20303 -18.72785 -18.43993 -17.46249 -17.27946 -17.06808 -16.73273 -16.34740 -15.53867 -15.35915 -15.12267 -14.87910 -14.46704 -14.33075 -14.21226 -13.98024 -13.84134 -13.72407 -13.60943 -13.55314 -13.23402 -13.02572 -12.90422 -12.79909 -12.57117 -12.46347 -12.23384 -12.10514 -11.87520 -11.74522 -11.40998 -11.14572 -10.82842 -10.62251 -10.21082 -9.42583 -9.36544 -9.09011 -8.03782 -6.22323 0.00805 0.88435 0.94525 1.13701 1.42310 1.50386 1.56981 1.57748 2.20113 2.30073 2.47897 2.67035 3.03878 3.20439 3.23898 3.33358 3.76198 3.88424 4.15591 4.29367 4.36620 4.38320 4.45595 4.51158 4.52061 4.59542 4.60920 4.69034 4.72804 4.80066 4.90296 4.97700 5.03572 5.08153 5.11745 5.16568 5.33969 5.47257 5.57012 5.74745 5.91041 5.96436 5.99868 6.44376 6.54903 6.80222 7.07994 7.11454 7.45555 7.80408 8.95758 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003570 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.977190 B = 7841.872303 C = 8944.170473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.405 5.405 4 O 0.074 5.926 5 C 0.214 3.786 6 C -0.026 4.026 7 C 0.118 3.882 8 N -0.649 5.649 9 C 0.582 3.418 10 O -0.581 6.581 11 C 0.055 3.945 12 H 0.068 0.932 13 C -0.525 4.525 14 H 0.075 0.925 15 C 0.044 3.956 16 N -0.875 5.875 17 Si 0.932 3.068 18 H -0.257 1.257 19 H -0.287 1.287 20 H -0.291 1.291 21 C -0.038 4.038 22 C -0.085 4.085 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.119 4.119 27 C 0.123 3.877 28 N -0.501 5.501 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.256 0.744 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 7.331 1.274 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.116 5.116 4 O 0.019 5.981 5 C -0.007 4.007 6 C -0.047 4.047 7 C -0.006 4.006 8 N -0.385 5.385 9 C 0.376 3.624 10 O -0.459 6.459 11 C 0.034 3.966 12 H 0.086 0.914 13 C -0.563 4.563 14 H 0.093 0.907 15 C -0.160 4.160 16 N -0.509 5.509 17 Si 0.759 3.241 18 H -0.180 1.180 19 H -0.213 1.213 20 H -0.217 1.217 21 C -0.039 4.039 22 C -0.103 4.103 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.165 4.165 26 C -0.138 4.138 27 C -0.001 4.001 28 N -0.235 5.235 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.160 0.840 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.294 7.427 0.567 11.910 hybrid contribution -0.273 -1.196 0.290 1.261 sum -9.567 6.232 0.857 11.450 Atomic orbital electron populations 1.20367 0.80154 1.05866 1.05619 1.26691 1.02216 0.82828 0.99071 1.74637 0.89545 1.24458 1.23008 1.85263 1.22438 1.24508 1.65870 1.28293 0.96030 0.81909 0.94420 1.21616 0.83563 0.98911 1.00609 1.22896 0.81642 1.02872 0.93203 1.49186 1.07444 1.68541 1.13359 1.20775 0.79517 0.72382 0.89758 1.90530 1.74097 1.48908 1.32413 1.17928 0.88768 0.97791 0.92109 0.91422 1.20849 1.45490 0.92851 0.97090 0.90736 1.25501 0.95017 0.99251 0.96235 1.70235 1.45146 1.14311 1.21211 0.85887 0.77940 0.79548 0.80739 1.18038 1.21297 1.21721 1.19945 0.95009 0.95130 0.93808 1.21132 0.93537 0.95534 1.00087 1.21316 0.95856 1.01264 0.98522 1.21182 1.00532 0.98488 0.95717 1.21189 0.94998 0.99839 1.00439 1.21044 0.95093 1.01037 0.96592 1.23034 0.82380 1.00617 0.94032 1.71956 1.00120 1.30122 1.21308 0.87796 0.87983 0.88067 0.84049 0.88016 0.91004 0.93509 0.86790 0.85604 0.84486 0.85329 0.88340 0.88301 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.16 3.87 8.22 138.46 1.14 5.00 16 3 N -0.41 -10.52 12.16 -60.30 -0.73 -11.25 16 4 O 0.07 1.91 11.03 74.87 0.83 2.74 16 5 C 0.21 5.50 7.60 88.38 0.67 6.17 16 6 C -0.03 -0.69 4.63 -11.21 -0.05 -0.74 16 7 C 0.12 3.54 8.18 83.18 0.68 4.22 16 8 N -0.65 -24.27 3.64 -858.38 -3.12 -27.40 16 9 C 0.58 27.10 5.70 87.66 0.50 27.60 16 10 O -0.58 -31.29 14.73 -3.01 -0.04 -31.34 16 11 C 0.06 2.52 2.66 -13.03 -0.03 2.49 16 12 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 13 C -0.53 -24.16 5.90 25.60 0.15 -24.01 16 14 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 15 C 0.04 2.14 4.00 84.65 0.34 2.48 16 16 N -0.87 -46.85 10.89 21.45 0.23 -46.61 16 17 Si 0.93 38.89 29.54 68.60 2.03 40.92 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 21 C -0.04 -1.79 4.51 -19.87 -0.09 -1.88 16 22 C -0.08 -3.88 8.21 22.27 0.18 -3.70 16 23 C -0.15 -6.03 10.05 22.27 0.22 -5.81 16 24 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 25 C -0.15 -5.74 10.05 22.27 0.22 -5.52 16 26 C -0.12 -5.37 8.21 22.27 0.18 -5.18 16 27 C 0.12 3.50 7.68 83.18 0.64 4.14 16 28 N -0.50 -13.42 11.55 -303.18 -3.50 -16.93 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 33 H 0.10 2.58 8.10 -2.39 -0.02 2.56 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.11 5.41 6.04 -2.91 -0.02 5.39 16 37 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.10 4.47 7.01 -2.91 -0.02 4.45 16 41 H 0.10 2.97 7.14 -2.39 -0.02 2.96 16 42 H 0.11 2.50 7.86 -2.39 -0.02 2.48 16 Total: -1.00 -65.86 356.31 2.46 -63.40 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 1.05 Total: 26.27 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.73 Total: 0.20 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -7.12 Total: -102.19 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: 0.78 Total: -28.60 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -65.86 2.46 -63.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362496779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.675 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds