Wall clock time and date at job start Tue Mar 31 2020 16:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47237 * 2 1 4 4 N 1.30500 * 125.65070 * 89.97395 * 3 2 1 5 5 C 1.34126 * 109.25505 * 180.02562 * 4 3 2 6 6 C 1.34672 * 108.02187 * 0.02562 * 5 4 3 7 7 N 1.35041 * 125.64875 * 270.28606 * 3 2 1 8 8 C 1.46505 * 126.39787 * 0.02562 * 7 3 2 9 9 C 1.53002 * 109.47335 * 85.14096 * 8 7 3 10 10 N 1.46496 * 109.47238 * 179.97438 * 9 8 7 11 11 S 1.65600 * 119.99991 * 164.99815 * 10 9 8 12 12 O 1.42099 * 104.27720 * 181.07106 * 11 10 9 13 13 O 1.42102 * 104.28114 * 308.93307 * 11 10 9 14 14 C 1.81405 * 104.44778 * 65.00541 * 11 10 9 15 15 C 1.52999 * 109.47035 * 173.81293 * 14 11 10 16 16 C 1.50700 * 115.55318 * 65.19354 * 15 14 11 17 17 H 1.08003 * 119.99725 * 264.78440 * 16 15 14 18 18 C 1.37874 * 119.99909 * 84.78032 * 16 15 14 19 19 N 1.31509 * 120.00224 * 352.23871 * 18 16 15 20 20 Si 1.86809 * 119.99727 * 172.23399 * 18 16 15 21 21 H 1.48498 * 109.46924 * 90.00441 * 20 18 16 22 22 H 1.48495 * 109.46982 * 210.00195 * 20 18 16 23 23 H 1.48500 * 109.47005 * 330.00326 * 20 18 16 24 24 C 1.52995 * 117.49880 * 279.51936 * 15 14 11 25 25 C 1.53008 * 117.49597 * 210.86237 * 15 14 11 26 26 H 1.09003 * 109.46460 * 299.99705 * 1 2 3 27 27 H 1.08998 * 109.46941 * 59.99623 * 1 2 3 28 28 H 1.08998 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47052 * 239.99670 * 2 1 3 30 30 H 1.09002 * 109.47120 * 119.99895 * 2 1 3 31 31 H 1.07998 * 125.98777 * 180.02562 * 5 4 3 32 32 H 1.07994 * 126.59227 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47204 * 205.14003 * 8 7 3 34 34 H 1.09001 * 109.47234 * 325.13869 * 8 7 3 35 35 H 1.08996 * 109.47349 * 300.00371 * 9 8 7 36 36 H 1.09005 * 109.47034 * 60.00233 * 9 8 7 37 37 H 0.97001 * 120.00146 * 345.00642 * 10 9 8 38 38 H 1.08998 * 109.46710 * 293.81133 * 14 11 10 39 39 H 1.08999 * 109.47218 * 53.80616 * 14 11 10 40 40 H 0.97003 * 119.99904 * 185.03137 * 19 18 16 41 41 H 1.09006 * 117.49809 * 0.02562 * 24 15 14 42 42 H 1.08997 * 117.50404 * 145.01686 * 24 15 14 43 43 H 1.08998 * 117.49371 * 214.97893 * 25 15 14 44 44 H 1.08992 * 117.49809 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2855 2.1381 1.0604 5 6 2.7141 3.3513 0.6818 6 6 2.7265 3.3875 -0.6643 7 7 2.2896 2.1647 -1.0973 8 6 2.1320 1.7414 -2.4910 9 6 0.6836 1.9640 -2.9310 10 7 0.5262 1.5414 -4.3248 11 16 -0.9882 1.3151 -4.9555 12 8 -0.7519 0.8925 -6.2914 13 8 -1.6334 0.4616 -4.0203 14 6 -1.7389 2.9664 -4.9336 15 6 -3.0960 2.9190 -5.6386 16 6 -4.1496 2.0783 -4.9647 17 1 -4.3026 1.0547 -5.2733 18 6 -4.9181 2.6159 -3.9541 19 7 -4.6332 3.8065 -3.4737 20 14 -6.3642 1.6531 -3.2674 21 1 -5.9049 0.8120 -2.1330 22 1 -7.4071 2.5976 -2.7928 23 1 -6.9300 0.7843 -4.3305 24 6 -3.0995 2.9638 -7.1679 25 6 -3.5591 4.1834 -6.3652 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.9992 4.1579 1.3410 32 1 3.0208 4.2221 -1.2832 33 1 2.7984 2.3255 -3.1257 34 1 2.3803 0.6838 -2.5799 35 1 0.0172 1.3800 -2.2964 36 1 0.4354 3.0217 -2.8423 37 1 1.3091 1.3939 -4.8783 38 1 -1.8766 3.2892 -3.9017 39 1 -1.0854 3.6694 -5.4501 40 1 -5.1271 4.1541 -2.7146 41 1 -2.1350 3.0266 -7.6718 42 1 -3.8640 2.3854 -7.6867 43 1 -4.6259 4.4068 -6.3560 44 1 -2.8972 5.0490 -6.3405 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364033847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:32 Heat of formation + Delta-G solvation = 7.419275 kcal Electronic energy + Delta-G solvation = -26579.678269 eV Core-core repulsion = 22854.069218 eV Total energy + Delta-G solvation = -3725.609050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23094 -36.83889 -36.62132 -36.22955 -35.20287 -33.82876 -33.35670 -32.09554 -28.83562 -28.27877 -28.19909 -25.51025 -23.81923 -23.53415 -21.49737 -21.27870 -19.99643 -19.50845 -18.81638 -17.44673 -16.95298 -16.59072 -16.10919 -15.53784 -15.24297 -15.05166 -14.76264 -14.46734 -14.36002 -14.18571 -13.84756 -13.51142 -13.44500 -13.19111 -12.67203 -12.30311 -12.15721 -12.02032 -11.87660 -11.54485 -11.51834 -11.39800 -11.27714 -11.08485 -11.06839 -10.97516 -10.64547 -10.51869 -10.19666 -10.03815 -9.82484 -9.74614 -9.42208 -9.01771 -8.61520 -8.44147 -8.17118 -6.19055 -4.30043 0.89861 1.92957 2.53767 3.08835 3.27829 3.33764 3.35866 3.38328 4.26094 4.33170 4.34238 4.37650 4.48963 4.63985 4.85401 4.89517 5.01373 5.08261 5.13790 5.19497 5.23690 5.30873 5.42479 5.51707 5.55973 5.64002 5.83335 5.85261 5.88881 5.97889 6.17986 6.21888 6.29485 6.34796 6.53387 6.65785 6.67842 6.91071 6.99020 7.07698 7.17502 7.33244 7.75421 8.03936 8.14202 8.75674 9.41769 10.88521 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.004085 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.467117 B = 6852.388594 C = 7661.257436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.040 4.040 3 C 0.214 3.786 4 N -0.492 5.492 5 C -0.028 4.028 6 C -0.059 4.059 7 N -0.453 5.453 8 C 0.099 3.901 9 C 0.098 3.902 10 N -1.132 6.132 11 S 2.606 3.394 12 O -0.970 6.970 13 O -0.945 6.945 14 C -0.552 4.552 15 C 0.042 3.958 16 C -0.517 4.517 17 H 0.069 0.931 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.269 1.269 24 C -0.208 4.208 25 C -0.140 4.140 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.264 0.736 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.239 -1.075 2.798 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.080 4.080 3 C -0.048 4.048 4 N -0.210 5.210 5 C -0.176 4.176 6 C -0.191 4.191 7 N -0.137 5.137 8 C -0.026 4.026 9 C -0.030 4.030 10 N -0.889 5.889 11 S 2.703 3.297 12 O -0.961 6.961 13 O -0.935 6.935 14 C -0.686 4.686 15 C 0.040 3.960 16 C -0.554 4.554 17 H 0.087 0.913 18 C -0.122 4.122 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.245 4.245 25 C -0.180 4.180 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.552 -2.029 3.417 15.085 hybrid contribution -0.161 0.898 -0.475 1.029 sum 14.391 -1.131 2.942 14.732 Atomic orbital electron populations 1.21894 0.93197 1.03017 1.03222 1.20027 0.96990 0.87109 1.03824 1.23382 1.03442 0.96751 0.81242 1.70251 1.18244 1.04303 1.28222 1.22278 1.06300 0.96255 0.92771 1.22721 1.09680 0.89738 0.96975 1.45297 1.49318 1.12116 1.06972 1.22031 0.97822 1.02947 0.79761 1.21657 0.96771 1.01376 0.83170 1.55991 1.26743 1.87157 1.18960 1.05250 0.72211 0.78536 0.73664 1.93518 1.83928 1.81370 1.37236 1.93543 1.73612 1.63063 1.63298 1.29972 1.08286 1.19450 1.10878 1.18283 0.90141 0.99700 0.87884 1.20508 1.17153 0.98015 1.19756 0.91325 1.24949 0.97017 0.94463 0.95806 1.69967 1.40844 1.16837 1.23302 0.86587 0.82019 0.79909 0.79736 1.19984 1.21032 1.19381 1.23202 1.01462 1.04056 0.95783 1.22556 1.00549 0.90734 1.04139 0.91781 0.91747 0.91234 0.90436 0.88794 0.81393 0.80855 0.88181 0.88145 0.88924 0.90946 0.75739 0.84908 0.88228 0.92663 0.90695 0.89455 0.89518 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.90 37.16 0.37 -1.49 16 2 C -0.04 -0.43 6.24 -27.88 -0.17 -0.60 16 3 C 0.21 2.71 7.16 -155.42 -1.11 1.60 16 4 N -0.49 -7.04 11.25 -10.82 -0.12 -7.16 16 5 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 6 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 7 N -0.45 -4.99 2.75 -113.90 -0.31 -5.30 16 8 C 0.10 0.88 6.03 -4.04 -0.02 0.85 16 9 C 0.10 1.16 6.46 -4.04 -0.03 1.13 16 10 N -1.13 -14.36 5.89 -10.61 -0.06 -14.43 16 11 S 2.61 48.75 5.19 -107.50 -0.56 48.19 16 12 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 13 O -0.95 -21.06 17.17 -57.54 -0.99 -22.04 16 14 C -0.55 -11.00 5.93 37.16 0.22 -10.78 16 15 C 0.04 1.00 1.32 -155.66 -0.21 0.79 16 16 C -0.52 -13.80 8.18 -34.44 -0.28 -14.08 16 17 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 19 N -0.87 -23.65 12.98 55.43 0.72 -22.93 16 20 Si 0.89 21.07 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.21 -4.42 9.96 -26.70 -0.27 -4.69 16 25 C -0.14 -3.12 9.49 -26.69 -0.25 -3.37 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.87 5.48 -51.93 -0.28 0.59 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.68 7.18 -51.93 -0.37 0.30 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.10 0.64 8.13 -51.93 -0.42 0.21 16 34 H 0.10 0.76 7.21 -51.93 -0.37 0.38 16 35 H 0.09 1.28 5.04 -51.93 -0.26 1.01 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.41 3.96 8.62 -34.47 -0.30 3.66 16 38 H 0.13 2.77 8.14 -51.93 -0.42 2.35 16 39 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 40 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 43 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -34.14 378.95 -10.56 -44.70 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.63 Total: 8.07 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -2.25 Total: -29.88 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.22 Total: -49.82 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.03 Total: -43.02 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 48.75 SS G_CDS: -0.56 Total: 48.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.14 -10.56 -44.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364033847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.123 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds