Wall clock time and date at job start Tue Mar 31 2020 16:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47237 * 2 1 4 4 N 1.30500 * 125.65070 * 89.97395 * 3 2 1 5 5 C 1.34126 * 109.25505 * 180.02562 * 4 3 2 6 6 C 1.34672 * 108.02187 * 0.02562 * 5 4 3 7 7 N 1.35041 * 125.64875 * 270.28606 * 3 2 1 8 8 C 1.46505 * 126.39787 * 0.02562 * 7 3 2 9 9 C 1.53002 * 109.47335 * 85.14096 * 8 7 3 10 10 N 1.46496 * 109.47238 * 179.97438 * 9 8 7 11 11 S 1.65600 * 119.99991 * 164.99815 * 10 9 8 12 12 O 1.42099 * 104.27720 * 181.07106 * 11 10 9 13 13 O 1.42102 * 104.28114 * 308.93307 * 11 10 9 14 14 C 1.81405 * 104.44778 * 65.00541 * 11 10 9 15 15 C 1.52999 * 109.47035 * 173.81293 * 14 11 10 16 16 C 1.50700 * 115.55318 * 65.19354 * 15 14 11 17 17 H 1.08003 * 119.99725 * 264.78440 * 16 15 14 18 18 C 1.37874 * 119.99909 * 84.78032 * 16 15 14 19 19 N 1.31509 * 120.00224 * 352.23871 * 18 16 15 20 20 Si 1.86809 * 119.99727 * 172.23399 * 18 16 15 21 21 H 1.48498 * 109.46924 * 90.00441 * 20 18 16 22 22 H 1.48495 * 109.46982 * 210.00195 * 20 18 16 23 23 H 1.48500 * 109.47005 * 330.00326 * 20 18 16 24 24 C 1.52995 * 117.49880 * 279.51936 * 15 14 11 25 25 C 1.53008 * 117.49597 * 210.86237 * 15 14 11 26 26 H 1.09003 * 109.46460 * 299.99705 * 1 2 3 27 27 H 1.08998 * 109.46941 * 59.99623 * 1 2 3 28 28 H 1.08998 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47052 * 239.99670 * 2 1 3 30 30 H 1.09002 * 109.47120 * 119.99895 * 2 1 3 31 31 H 1.07998 * 125.98777 * 180.02562 * 5 4 3 32 32 H 1.07994 * 126.59227 * 179.97438 * 6 5 4 33 33 H 1.08994 * 109.47204 * 205.14003 * 8 7 3 34 34 H 1.09001 * 109.47234 * 325.13869 * 8 7 3 35 35 H 1.08996 * 109.47349 * 300.00371 * 9 8 7 36 36 H 1.09005 * 109.47034 * 60.00233 * 9 8 7 37 37 H 0.97001 * 120.00146 * 345.00642 * 10 9 8 38 38 H 1.08998 * 109.46710 * 293.81133 * 14 11 10 39 39 H 1.08999 * 109.47218 * 53.80616 * 14 11 10 40 40 H 0.97003 * 119.99904 * 185.03137 * 19 18 16 41 41 H 1.09006 * 117.49809 * 0.02562 * 24 15 14 42 42 H 1.08997 * 117.50404 * 145.01686 * 24 15 14 43 43 H 1.08998 * 117.49371 * 214.97893 * 25 15 14 44 44 H 1.08992 * 117.49809 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2855 2.1381 1.0604 5 6 2.7141 3.3513 0.6818 6 6 2.7265 3.3875 -0.6643 7 7 2.2896 2.1647 -1.0973 8 6 2.1320 1.7414 -2.4910 9 6 0.6836 1.9640 -2.9310 10 7 0.5262 1.5414 -4.3248 11 16 -0.9882 1.3151 -4.9555 12 8 -0.7519 0.8925 -6.2914 13 8 -1.6334 0.4616 -4.0203 14 6 -1.7389 2.9664 -4.9336 15 6 -3.0960 2.9190 -5.6386 16 6 -4.1496 2.0783 -4.9647 17 1 -4.3026 1.0547 -5.2733 18 6 -4.9181 2.6159 -3.9541 19 7 -4.6332 3.8065 -3.4737 20 14 -6.3642 1.6531 -3.2674 21 1 -5.9049 0.8120 -2.1330 22 1 -7.4071 2.5976 -2.7928 23 1 -6.9300 0.7843 -4.3305 24 6 -3.0995 2.9638 -7.1679 25 6 -3.5591 4.1834 -6.3652 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.9992 4.1579 1.3410 32 1 3.0208 4.2221 -1.2832 33 1 2.7984 2.3255 -3.1257 34 1 2.3803 0.6838 -2.5799 35 1 0.0172 1.3800 -2.2964 36 1 0.4354 3.0217 -2.8423 37 1 1.3091 1.3939 -4.8783 38 1 -1.8766 3.2892 -3.9017 39 1 -1.0854 3.6694 -5.4501 40 1 -5.1271 4.1541 -2.7146 41 1 -2.1350 3.0266 -7.6718 42 1 -3.8640 2.3854 -7.6867 43 1 -4.6259 4.4068 -6.3560 44 1 -2.8972 5.0490 -6.3405 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364033847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:31 Heat of formation + Delta-G solvation = -15.829290 kcal Electronic energy + Delta-G solvation = -26580.686402 eV Core-core repulsion = 22854.069218 eV Total energy + Delta-G solvation = -3726.617184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.07169 -38.57880 -38.02922 -37.39008 -36.79144 -34.70362 -34.30609 -34.09949 -29.88199 -29.70745 -29.11635 -27.50003 -24.71663 -24.42232 -23.00012 -22.33020 -21.58558 -20.60695 -20.17348 -18.66620 -18.36892 -17.91982 -17.35882 -16.84704 -16.72026 -16.27384 -16.22743 -15.79446 -15.44109 -15.28639 -15.09004 -14.90837 -14.41316 -14.31154 -13.77874 -13.71432 -13.52687 -13.22699 -13.16481 -13.00541 -12.92440 -12.88479 -12.82816 -12.75611 -12.44847 -12.44413 -12.22884 -11.99238 -11.90405 -11.57045 -10.94170 -10.88676 -10.68132 -10.57829 -10.53877 -9.89404 -9.28375 -8.21413 -6.35566 -0.57316 1.08147 1.36943 1.39919 1.47722 1.66054 2.16220 2.19520 2.37813 2.89840 3.06457 3.36453 3.41170 3.49704 3.61039 3.70110 3.85035 3.96928 4.13862 4.21917 4.26831 4.36036 4.37122 4.42820 4.51796 4.58620 4.60600 4.70373 4.76216 4.80735 4.85276 4.96981 4.97640 5.07433 5.20840 5.36292 5.39710 5.46016 5.58431 5.70153 5.87293 6.10446 6.21172 6.25016 6.70879 7.17481 7.37111 8.85305 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.004085 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.467117 B = 6852.388594 C = 7661.257436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.037 4.037 3 C 0.196 3.804 4 N -0.530 5.530 5 C -0.058 4.058 6 C -0.048 4.048 7 N -0.453 5.453 8 C 0.101 3.899 9 C 0.092 3.908 10 N -1.107 6.107 11 S 2.628 3.372 12 O -0.989 6.989 13 O -0.988 6.988 14 C -0.554 4.554 15 C 0.009 3.991 16 C -0.533 4.533 17 H 0.050 0.950 18 C 0.044 3.956 19 N -0.893 5.893 20 Si 0.931 3.069 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.268 1.268 24 C -0.195 4.195 25 C -0.141 4.141 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.183 0.817 32 H 0.209 0.791 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.429 0.571 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.264 0.736 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.309 -0.594 1.833 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.076 4.076 3 C -0.067 4.067 4 N -0.249 5.249 5 C -0.204 4.204 6 C -0.181 4.181 7 N -0.137 5.137 8 C -0.022 4.022 9 C -0.035 4.035 10 N -0.869 5.869 11 S 2.724 3.276 12 O -0.979 6.979 13 O -0.978 6.978 14 C -0.687 4.687 15 C 0.007 3.993 16 C -0.570 4.570 17 H 0.068 0.932 18 C -0.159 4.159 19 N -0.529 5.529 20 Si 0.757 3.243 21 H -0.203 1.203 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.232 4.232 25 C -0.180 4.180 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.200 0.800 32 H 0.226 0.774 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.266 0.734 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.621 -1.548 2.425 16.868 hybrid contribution -0.770 0.768 -0.181 1.102 sum 15.852 -0.780 2.244 16.029 Atomic orbital electron populations 1.21862 0.94608 1.03143 1.01550 1.20062 0.95597 0.86719 1.05214 1.23657 1.03904 0.97472 0.81652 1.70196 1.19400 1.05630 1.29719 1.22709 1.07291 0.96240 0.94189 1.23276 1.07831 0.90106 0.96858 1.45426 1.48764 1.12100 1.07377 1.22177 0.96122 1.04849 0.79080 1.21767 0.98716 1.01207 0.81847 1.55275 1.25357 1.86743 1.19556 1.04283 0.72933 0.77621 0.72775 1.93484 1.84550 1.81574 1.38311 1.93496 1.75530 1.64331 1.64400 1.29884 1.07310 1.21435 1.10050 1.18418 0.91297 1.00267 0.89317 1.20703 1.18471 0.97715 1.20104 0.93181 1.25487 0.98757 0.95342 0.96307 1.70013 1.41604 1.17555 1.23697 0.85954 0.80184 0.79129 0.79066 1.20293 1.20046 1.19194 1.23251 1.02505 1.02879 0.94537 1.22513 0.99778 0.91444 1.04224 0.93208 0.93586 0.90217 0.88321 0.88105 0.79973 0.77445 0.84541 0.86527 0.91190 0.90462 0.73403 0.86242 0.84613 0.92641 0.88040 0.89977 0.91715 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.90 71.98 0.71 -3.00 16 2 C -0.04 -0.75 6.24 29.85 0.19 -0.57 16 3 C 0.20 4.76 7.16 138.13 0.99 5.74 16 4 N -0.53 -15.00 11.25 -188.13 -2.12 -17.12 16 5 C -0.06 -1.32 11.87 83.52 0.99 -0.33 16 6 C -0.05 -0.89 11.58 83.09 0.96 0.07 16 7 N -0.45 -8.89 2.75 -514.28 -1.41 -10.30 16 8 C 0.10 1.44 6.03 86.38 0.52 1.96 16 9 C 0.09 1.97 6.46 86.38 0.56 2.53 16 10 N -1.11 -25.13 5.89 -187.49 -1.10 -26.23 16 11 S 2.63 94.97 5.19 -56.49 -0.29 94.68 16 12 O -0.99 -38.87 18.08 -127.65 -2.31 -41.17 16 13 O -0.99 -44.28 17.17 -127.65 -2.19 -46.47 16 14 C -0.55 -21.28 5.93 71.98 0.43 -20.85 16 15 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 16 C -0.53 -28.79 8.18 25.60 0.21 -28.58 16 17 H 0.05 2.81 7.83 -2.91 -0.02 2.79 16 18 C 0.04 2.38 5.38 84.65 0.46 2.84 16 19 N -0.89 -48.64 12.98 21.45 0.28 -48.36 16 20 Si 0.93 43.58 29.55 68.60 2.03 45.61 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 C -0.19 -8.00 9.96 30.62 0.30 -7.69 16 25 C -0.14 -6.09 9.49 30.62 0.29 -5.80 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.28 5.48 -2.39 -0.01 1.27 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.53 7.18 -2.39 -0.02 1.51 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 32 H 0.21 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.14 1.00 8.13 -2.39 -0.02 0.98 16 34 H 0.12 1.31 7.21 -2.39 -0.02 1.30 16 35 H 0.07 1.89 5.04 -2.39 -0.01 1.88 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.43 6.64 8.62 -96.74 -0.83 5.80 16 38 H 0.12 4.92 8.14 -2.39 -0.02 4.90 16 39 H 0.14 4.07 8.09 -2.39 -0.02 4.06 16 40 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 41 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 42 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 43 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -75.13 378.95 -0.41 -75.54 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.17 Total: 27.14 kcal Atomic # 6 Polarization: -59.86 SS G_CDS: 6.54 Total: -53.32 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.36 Total: -102.00 kcal Atomic # 8 Polarization: -83.15 SS G_CDS: -4.50 Total: -87.64 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 94.97 SS G_CDS: -0.29 Total: 94.68 kcal Total: -75.13 -0.41 -75.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364033847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.715 kcal (2) G-P(sol) polarization free energy of solvation -75.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds