Wall clock time and date at job start Tue Mar 31 2020 14:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38670 * 120.78896 * 2 1 4 4 C 1.38183 * 119.15807 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.77196 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.71960 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.61554 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47236 * 275.00493 * 7 6 5 9 9 C 1.34768 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00361 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00445 * 179.97438 * 9 8 7 12 12 C 1.39943 * 120.00484 * 174.72950 * 11 9 8 13 13 C 1.38955 * 120.03478 * 326.34751 * 12 11 9 14 14 C 1.38155 * 120.06838 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.13876 * 359.70055 * 14 13 12 16 16 C 1.38912 * 120.06629 * 0.55355 * 15 14 13 17 17 O 1.35747 * 120.03448 * 179.74558 * 16 15 14 18 18 C 1.34825 * 116.99973 * 173.82546 * 17 16 15 19 19 H 1.07996 * 120.00187 * 354.59146 * 18 17 16 20 20 C 1.38657 * 119.99760 * 174.59112 * 18 17 16 21 21 N 1.31562 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99892 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46676 * 90.00256 * 22 20 18 24 24 H 1.48495 * 109.46941 * 209.99883 * 22 20 18 25 25 H 1.48497 * 109.47305 * 330.00466 * 22 20 18 26 26 C 1.38708 * 120.03573 * 146.36795 * 12 11 9 27 27 C 1.38226 * 120.76857 * 0.28217 * 6 5 4 28 28 H 1.08996 * 109.47368 * 89.99581 * 1 2 3 29 29 H 1.09000 * 109.46985 * 209.99693 * 1 2 3 30 30 H 1.09000 * 109.46893 * 329.99178 * 1 2 3 31 31 H 1.08000 * 120.42080 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.61151 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47065 * 155.00113 * 7 6 5 34 34 H 1.09002 * 109.46936 * 34.99800 * 7 6 5 35 35 H 0.97003 * 119.99930 * 359.97438 * 8 7 6 36 36 H 0.97006 * 119.99843 * 354.73322 * 11 9 8 37 37 H 1.07998 * 119.96551 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.93284 * 180.02562 * 14 13 12 39 39 H 1.07993 * 119.96695 * 180.30197 * 15 14 13 40 40 H 0.97001 * 120.00059 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.07020 * 0.02562 * 26 12 11 42 42 H 1.07999 * 120.42251 * 179.70631 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2404 0.0000 0.0016 6 6 3.5984 -1.1516 0.0016 7 6 4.3800 -2.4401 0.0034 8 7 4.7380 -2.7960 -1.3719 9 6 5.4434 -3.9181 -1.6157 10 8 5.7833 -4.6349 -0.6943 11 7 5.7723 -4.2459 -2.8810 12 6 6.5973 -5.3494 -3.1261 13 6 7.6031 -5.6794 -2.2260 14 6 8.4183 -6.7683 -2.4675 15 6 8.2325 -7.5362 -3.6012 16 6 7.2322 -7.2083 -4.5076 17 8 7.0535 -7.9601 -5.6236 18 6 5.9875 -7.6666 -6.3951 19 1 5.2739 -6.9239 -6.0703 20 6 5.8074 -8.3183 -7.6057 21 7 6.6764 -9.2233 -8.0012 22 14 4.3300 -7.9122 -8.6743 23 1 4.6801 -6.8084 -9.6041 24 1 3.9396 -9.1128 -9.4561 25 1 3.1960 -7.4923 -7.8124 26 6 6.4122 -6.1146 -4.2681 27 6 2.2167 -1.1910 -0.0053 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6968 2.1378 0.0004 32 1 4.1583 2.0754 0.0010 33 1 3.7717 -3.2335 0.4375 34 1 5.2876 -2.3136 0.5938 35 1 4.4665 -2.2244 -2.1072 36 1 5.4371 -3.7169 -3.6218 37 1 7.7477 -5.0841 -1.3366 38 1 9.1991 -7.0231 -1.7663 39 1 8.8682 -8.3896 -3.7848 40 1 6.5502 -9.6795 -8.8479 41 1 5.6316 -5.8597 -4.9696 42 1 1.6965 -2.1374 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364077348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:29 Heat of formation + Delta-G solvation = 9.186364 kcal Electronic energy + Delta-G solvation = -25676.184349 eV Core-core repulsion = 21815.207974 eV Total energy + Delta-G solvation = -3860.976375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87186 -40.18887 -38.70976 -36.62923 -35.24272 -34.22279 -34.15381 -32.23095 -31.82890 -29.32054 -28.52990 -28.32441 -26.66226 -25.24836 -23.58087 -22.33097 -21.75608 -21.35090 -20.41281 -18.66643 -17.82864 -17.45440 -17.09646 -16.64386 -16.12012 -15.57047 -15.43201 -15.10845 -14.86688 -14.53517 -14.40015 -14.11263 -13.97605 -13.55402 -13.52965 -13.27186 -13.20580 -12.97501 -12.92956 -12.81939 -12.29909 -11.87484 -11.70461 -11.54513 -11.10543 -10.99977 -10.71385 -10.42090 -10.10233 -9.94554 -9.88988 -9.64827 -9.50130 -9.42607 -9.19361 -8.77474 -7.66086 -7.09100 -6.42323 -4.01778 0.56129 0.79211 2.10753 2.44707 2.68426 3.12466 3.13119 3.18161 3.34101 3.39367 3.79314 3.97704 4.11930 4.24425 4.29386 4.59035 4.65051 4.66476 4.85000 5.02264 5.05583 5.13515 5.17341 5.30276 5.32373 5.39481 5.52193 5.67897 5.74695 5.82704 6.05555 6.13405 6.22445 6.25157 6.30532 6.33866 6.59353 6.83163 7.05221 7.14883 7.31028 7.38513 7.47208 7.55819 7.87533 8.01779 8.04403 8.64955 9.03211 9.74713 10.75898 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.002393 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.769414 B =11700.078846 C =13351.539614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.043 4.043 3 C -0.170 4.170 4 C 0.103 3.897 5 N -0.472 5.472 6 C 0.112 3.888 7 C 0.193 3.807 8 N -0.741 5.741 9 C 0.706 3.294 10 O -0.569 6.569 11 N -0.681 5.681 12 C 0.199 3.801 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.089 0.911 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.258 4.258 27 C -0.154 4.154 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.396 0.604 36 H 0.402 0.598 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.269 0.731 41 H 0.129 0.871 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 20.974 14.104 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.051 4.051 3 C -0.190 4.190 4 C -0.054 4.054 5 N -0.182 5.182 6 C -0.025 4.025 7 C 0.068 3.932 8 N -0.397 5.397 9 C 0.406 3.594 10 O -0.445 6.445 11 N -0.328 5.328 12 C 0.106 3.894 13 C -0.225 4.225 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.764 3.236 23 H -0.200 1.200 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.280 4.280 27 C -0.174 4.174 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.237 0.763 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.984 19.983 14.705 26.744 hybrid contribution -2.111 0.983 -1.306 2.669 sum -12.095 20.966 13.400 27.666 Atomic orbital electron populations 1.20857 0.89974 1.03530 1.03151 1.20395 0.97003 0.92886 0.94860 1.22120 0.95735 0.98784 1.02385 1.22796 0.91760 0.96073 0.94820 1.67530 1.41289 0.98019 1.11349 1.21213 0.91071 0.93616 0.96634 1.19900 0.99240 0.90668 0.83357 1.44960 1.60461 1.25532 1.08775 1.15816 0.78869 0.81218 0.83470 1.90958 1.58619 1.51867 1.43046 1.42565 1.52301 1.31252 1.06669 1.17171 0.89948 0.86978 0.95346 1.20575 0.98057 1.02169 1.01701 1.20529 0.97813 0.94123 0.95706 1.20239 1.02121 1.03865 0.95958 1.19066 0.92508 0.89008 0.87961 1.84018 1.44628 1.50138 1.29282 1.21259 1.00183 1.24568 1.00687 0.89315 1.25267 0.98893 0.95914 0.96450 1.70039 1.34878 1.23405 1.21489 0.85740 0.79995 0.78245 0.79587 1.19956 1.20271 1.19314 1.20776 1.06608 0.99444 1.01144 1.21969 0.94625 0.99170 1.01659 0.90283 0.90784 0.90905 0.84661 0.82457 0.89788 0.89586 0.77029 0.76323 0.86175 0.86629 0.86419 0.92072 0.85338 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.06 36.01 0.36 -0.12 16 2 C -0.04 -0.28 5.92 -104.31 -0.62 -0.90 16 3 C -0.17 -1.03 9.82 -39.44 -0.39 -1.42 16 4 C 0.10 0.76 11.18 -17.55 -0.20 0.57 16 5 N -0.47 -4.70 10.27 -9.47 -0.10 -4.79 16 6 C 0.11 1.04 6.15 -82.59 -0.51 0.54 16 7 C 0.19 2.03 5.98 -5.19 -0.03 2.00 16 8 N -0.74 -8.48 5.55 -66.41 -0.37 -8.85 16 9 C 0.71 11.04 8.30 -86.93 -0.72 10.32 16 10 O -0.57 -11.01 14.05 5.29 0.07 -10.93 16 11 N -0.68 -10.71 5.35 -14.24 -0.08 -10.79 16 12 C 0.20 3.93 6.27 -83.72 -0.52 3.40 16 13 C -0.20 -4.06 8.65 -39.35 -0.34 -4.40 16 14 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 15 C -0.20 -4.42 9.99 -39.35 -0.39 -4.82 16 16 C 0.17 4.15 6.64 -39.13 -0.26 3.89 16 17 O -0.18 -5.08 9.76 0.07 0.00 -5.08 16 18 C -0.39 -10.90 9.44 30.89 0.29 -10.61 16 19 H 0.09 2.29 5.30 -52.49 -0.28 2.01 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 22 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 C -0.26 -5.68 9.04 -39.21 -0.35 -6.03 16 27 C -0.15 -1.17 9.43 -39.44 -0.37 -1.54 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 31 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.69 8.48 -40.82 -0.35 3.35 16 36 H 0.40 5.01 8.83 -40.82 -0.36 4.65 16 37 H 0.12 2.37 6.43 -52.49 -0.34 2.03 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.77 5.72 -52.49 -0.30 2.47 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -34.97 365.82 -8.74 -43.71 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.98 Total: 10.18 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -4.55 Total: -9.77 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.22 Total: -49.02 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.07 Total: -16.01 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.97 -8.74 -43.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364077348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.899 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds