Wall clock time and date at job start Tue Mar 31 2020 14:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38670 * 120.78896 * 2 1 4 4 C 1.38183 * 119.15807 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.77196 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.71960 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.61554 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47236 * 275.00493 * 7 6 5 9 9 C 1.34768 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21591 * 120.00361 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00445 * 179.97438 * 9 8 7 12 12 C 1.39943 * 120.00484 * 174.72950 * 11 9 8 13 13 C 1.38955 * 120.03478 * 326.34751 * 12 11 9 14 14 C 1.38155 * 120.06838 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.13876 * 359.70055 * 14 13 12 16 16 C 1.38912 * 120.06629 * 0.55355 * 15 14 13 17 17 O 1.35747 * 120.03448 * 179.74558 * 16 15 14 18 18 C 1.34825 * 116.99973 * 173.82546 * 17 16 15 19 19 H 1.07996 * 120.00187 * 354.59146 * 18 17 16 20 20 C 1.38657 * 119.99760 * 174.59112 * 18 17 16 21 21 N 1.31562 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99892 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46676 * 90.00256 * 22 20 18 24 24 H 1.48495 * 109.46941 * 209.99883 * 22 20 18 25 25 H 1.48497 * 109.47305 * 330.00466 * 22 20 18 26 26 C 1.38708 * 120.03573 * 146.36795 * 12 11 9 27 27 C 1.38226 * 120.76857 * 0.28217 * 6 5 4 28 28 H 1.08996 * 109.47368 * 89.99581 * 1 2 3 29 29 H 1.09000 * 109.46985 * 209.99693 * 1 2 3 30 30 H 1.09000 * 109.46893 * 329.99178 * 1 2 3 31 31 H 1.08000 * 120.42080 * 0.02562 * 3 2 1 32 32 H 1.08005 * 119.61151 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47065 * 155.00113 * 7 6 5 34 34 H 1.09002 * 109.46936 * 34.99800 * 7 6 5 35 35 H 0.97003 * 119.99930 * 359.97438 * 8 7 6 36 36 H 0.97006 * 119.99843 * 354.73322 * 11 9 8 37 37 H 1.07998 * 119.96551 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.93284 * 180.02562 * 14 13 12 39 39 H 1.07993 * 119.96695 * 180.30197 * 15 14 13 40 40 H 0.97001 * 120.00059 * 179.97438 * 21 20 18 41 41 H 1.07999 * 120.07020 * 0.02562 * 26 12 11 42 42 H 1.07999 * 120.42251 * 179.70631 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2404 0.0000 0.0016 6 6 3.5984 -1.1516 0.0016 7 6 4.3800 -2.4401 0.0034 8 7 4.7380 -2.7960 -1.3719 9 6 5.4434 -3.9181 -1.6157 10 8 5.7833 -4.6349 -0.6943 11 7 5.7723 -4.2459 -2.8810 12 6 6.5973 -5.3494 -3.1261 13 6 7.6031 -5.6794 -2.2260 14 6 8.4183 -6.7683 -2.4675 15 6 8.2325 -7.5362 -3.6012 16 6 7.2322 -7.2083 -4.5076 17 8 7.0535 -7.9601 -5.6236 18 6 5.9875 -7.6666 -6.3951 19 1 5.2739 -6.9239 -6.0703 20 6 5.8074 -8.3183 -7.6057 21 7 6.6764 -9.2233 -8.0012 22 14 4.3300 -7.9122 -8.6743 23 1 4.6801 -6.8084 -9.6041 24 1 3.9396 -9.1128 -9.4561 25 1 3.1960 -7.4923 -7.8124 26 6 6.4122 -6.1146 -4.2681 27 6 2.2167 -1.1910 -0.0053 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.6968 2.1378 0.0004 32 1 4.1583 2.0754 0.0010 33 1 3.7717 -3.2335 0.4375 34 1 5.2876 -2.3136 0.5938 35 1 4.4665 -2.2244 -2.1072 36 1 5.4371 -3.7169 -3.6218 37 1 7.7477 -5.0841 -1.3366 38 1 9.1991 -7.0231 -1.7663 39 1 8.8682 -8.3896 -3.7848 40 1 6.5502 -9.6795 -8.8479 41 1 5.6316 -5.8597 -4.9696 42 1 1.6965 -2.1374 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364077348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:28 Heat of formation + Delta-G solvation = -14.896918 kcal Electronic energy + Delta-G solvation = -25677.228679 eV Core-core repulsion = 21815.207974 eV Total energy + Delta-G solvation = -3862.020704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80626 -41.23689 -40.40877 -38.29398 -36.25804 -35.65593 -34.78995 -34.21189 -32.62720 -30.93330 -30.13592 -28.76774 -27.64317 -27.16698 -24.17598 -23.65570 -23.47117 -22.04682 -21.85243 -20.16204 -19.42261 -19.10941 -17.69851 -17.61019 -17.06116 -16.89163 -16.61665 -16.31769 -16.30627 -15.88767 -15.72443 -15.50367 -15.32294 -14.97162 -14.56843 -14.33885 -14.14180 -13.95556 -13.69093 -13.55270 -13.45766 -13.33763 -13.20780 -12.76384 -12.67704 -12.39669 -12.35184 -12.10268 -11.57847 -11.31909 -11.17741 -10.71649 -10.49298 -10.44084 -10.25975 -10.09426 -9.31978 -8.83046 -8.44795 -6.13361 -0.01834 0.26949 0.46513 0.72556 1.36584 1.45826 1.53892 1.55087 2.01745 2.19205 2.74278 2.86246 3.11988 3.19537 3.23604 3.51564 3.60328 3.83420 4.10163 4.12881 4.15688 4.34213 4.36468 4.46720 4.48250 4.60474 4.65417 4.69180 4.74815 4.78813 4.85610 5.02562 5.03735 5.12696 5.21427 5.24726 5.34538 5.37424 5.48943 5.69176 5.70536 5.74109 5.90581 6.03512 6.21845 6.86931 6.98504 6.99570 7.39286 7.79587 8.78267 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013558 B = 0.002393 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.769414 B =11700.078846 C =13351.539614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.163 4.163 4 C 0.091 3.909 5 N -0.503 5.503 6 C 0.097 3.903 7 C 0.196 3.804 8 N -0.720 5.720 9 C 0.706 3.294 10 O -0.606 6.606 11 N -0.673 5.673 12 C 0.207 3.793 13 C -0.200 4.200 14 C -0.051 4.051 15 C -0.214 4.214 16 C 0.135 3.865 17 O -0.226 6.226 18 C -0.412 4.412 19 H 0.102 0.898 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.019 2.981 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.253 1.253 26 C -0.260 4.260 27 C -0.158 4.158 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.178 0.822 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.419 0.581 37 H 0.129 0.871 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.130 0.870 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 23.816 15.061 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.056 4.056 3 C -0.183 4.183 4 C -0.066 4.066 5 N -0.214 5.214 6 C -0.040 4.040 7 C 0.071 3.929 8 N -0.376 5.376 9 C 0.406 3.594 10 O -0.485 6.485 11 N -0.321 5.321 12 C 0.111 3.889 13 C -0.221 4.221 14 C -0.069 4.069 15 C -0.234 4.234 16 C 0.084 3.916 17 O -0.132 6.132 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.838 3.162 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.177 1.177 26 C -0.282 4.282 27 C -0.178 4.178 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.182 0.818 32 H 0.195 0.805 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.256 0.744 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.231 22.910 15.696 30.345 hybrid contribution -1.380 0.302 -1.319 1.933 sum -13.611 23.212 14.377 30.508 Atomic orbital electron populations 1.20912 0.88138 1.04471 1.03818 1.20743 0.98354 0.92554 0.93934 1.22456 0.95288 0.99941 1.00592 1.23214 0.92805 0.95990 0.94614 1.67457 1.42486 0.98870 1.12552 1.20981 0.91565 0.92875 0.98556 1.19906 0.98881 0.91862 0.82225 1.44821 1.58793 1.24044 1.09914 1.15911 0.78953 0.81790 0.82709 1.90932 1.60226 1.53330 1.44022 1.42414 1.51739 1.30331 1.07633 1.17170 0.90062 0.87419 0.94221 1.20864 0.97591 1.02024 1.01598 1.20909 0.98058 0.92911 0.95032 1.20469 1.01876 1.04609 0.96471 1.19582 0.94212 0.90080 0.87746 1.83985 1.45775 1.52366 1.31072 1.21782 1.00750 1.25083 1.01195 0.88107 1.26588 1.02332 0.95446 0.97651 1.70189 1.37683 1.25431 1.22459 0.84589 0.75878 0.78315 0.77435 1.18640 1.19813 1.17673 1.20790 1.06243 0.99183 1.02011 1.22105 0.94005 1.00305 1.01406 0.89611 0.90424 0.89477 0.81826 0.80518 0.89411 0.91104 0.75510 0.74364 0.85348 0.82849 0.86196 0.91853 0.85268 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.06 71.24 0.72 0.12 16 2 C -0.05 -0.49 5.92 -19.66 -0.12 -0.61 16 3 C -0.16 -1.51 9.82 22.36 0.22 -1.29 16 4 C 0.09 1.17 11.18 84.67 0.95 2.11 16 5 N -0.50 -9.42 10.27 -183.88 -1.89 -11.31 16 6 C 0.10 1.70 6.15 42.55 0.26 1.96 16 7 C 0.20 3.96 5.98 85.63 0.51 4.47 16 8 N -0.72 -15.48 5.55 -482.30 -2.68 -18.16 16 9 C 0.71 21.13 8.30 179.06 1.49 22.62 16 10 O -0.61 -22.83 14.05 -4.00 -0.06 -22.89 16 11 N -0.67 -20.16 5.35 -317.24 -1.70 -21.86 16 12 C 0.21 7.95 6.27 38.13 0.24 8.19 16 13 C -0.20 -7.65 8.65 22.42 0.19 -7.45 16 14 C -0.05 -1.89 10.03 22.24 0.22 -1.67 16 15 C -0.21 -9.48 9.99 22.42 0.22 -9.26 16 16 C 0.14 6.84 6.64 22.56 0.15 6.99 16 17 O -0.23 -13.56 9.76 -22.66 -0.22 -13.78 16 18 C -0.41 -23.74 9.44 67.92 0.64 -23.10 16 19 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 20 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 21 N -0.92 -56.16 13.67 21.61 0.30 -55.87 16 22 Si 1.02 42.15 29.55 68.60 2.03 44.18 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 26 C -0.26 -11.53 9.04 22.51 0.20 -11.33 16 27 C -0.16 -2.11 9.43 22.36 0.21 -1.90 16 28 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 30 H 0.09 0.21 8.10 -2.39 -0.02 0.19 16 31 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.09 1.70 8.04 -2.39 -0.02 1.68 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.41 6.88 8.48 -92.71 -0.79 6.09 16 36 H 0.42 9.67 8.83 -92.70 -0.82 8.85 16 37 H 0.13 4.81 6.43 -2.91 -0.02 4.79 16 38 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 41 H 0.13 5.60 5.72 -2.91 -0.02 5.58 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -78.96 365.82 1.84 -77.12 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.52 Total: 33.53 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 6.58 Total: -10.96 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.97 Total: -107.19 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.28 Total: -36.67 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -78.96 1.84 -77.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364077348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.223 kcal (2) G-P(sol) polarization free energy of solvation -78.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds