Wall clock time and date at job start Tue Mar 31 2020 14:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38673 * 120.41969 * 2 1 4 4 C 1.38629 * 118.42207 * 180.02562 * 3 2 1 5 5 C 1.38227 * 119.15955 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.61712 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.46858 * 95.00154 * 6 5 4 8 8 C 1.34784 * 119.99660 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.39939 * 119.99758 * 174.73723 * 10 8 7 12 12 C 1.38956 * 120.03570 * 326.32472 * 11 10 8 13 13 C 1.38156 * 120.07081 * 180.02562 * 12 11 10 14 14 C 1.38175 * 120.13567 * 359.72119 * 13 12 11 15 15 C 1.38905 * 120.06692 * 0.55652 * 14 13 12 16 16 O 1.35755 * 120.03289 * 179.72231 * 15 14 13 17 17 C 1.34825 * 117.00011 * 173.82163 * 16 15 14 18 18 H 1.07996 * 119.99945 * 354.59785 * 17 16 15 19 19 C 1.38654 * 119.99933 * 174.60004 * 17 16 15 20 20 N 1.31562 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46833 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47194 * 119.99906 * 21 19 17 24 24 H 1.48503 * 109.46815 * 240.00051 * 21 19 17 25 25 C 1.38708 * 120.03895 * 146.35779 * 11 10 8 26 26 N 1.31854 * 120.76695 * 0.25788 * 5 4 3 27 27 C 1.31889 * 121.72440 * 359.47073 * 26 5 4 28 28 H 1.09003 * 109.47319 * 90.00496 * 1 2 3 29 29 H 1.09003 * 109.47473 * 209.99560 * 1 2 3 30 30 H 1.08991 * 109.47359 * 330.00304 * 1 2 3 31 31 H 1.07996 * 120.78659 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.41996 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46773 * 335.00003 * 6 5 4 34 34 H 1.09001 * 109.46978 * 214.99821 * 6 5 4 35 35 H 0.96996 * 120.00079 * 359.97438 * 7 6 5 36 36 H 0.97001 * 120.00264 * 354.72212 * 10 8 7 37 37 H 1.08002 * 119.96782 * 0.02562 * 12 11 10 38 38 H 1.07998 * 119.93391 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.96247 * 180.28112 * 14 13 12 40 40 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.06084 * 359.97438 * 25 11 10 42 42 H 1.07997 * 119.61872 * 180.27075 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0005 6 6 5.7312 -0.1469 -0.0017 7 7 6.2150 -0.2875 1.3739 8 6 7.5382 -0.3651 1.6183 9 8 8.3303 -0.3189 0.6970 10 7 7.9833 -0.4950 2.8838 11 6 9.3476 -0.6862 3.1295 12 6 10.1217 -1.4091 2.2300 13 6 11.4686 -1.5987 2.4721 14 6 12.0514 -1.0656 3.6059 15 6 11.2818 -0.3468 4.5117 16 8 11.8539 0.1718 5.6282 17 6 11.0829 0.9648 6.3992 18 1 10.0885 1.2324 6.0738 19 6 11.5666 1.4367 7.6099 20 7 12.7778 1.1103 8.0065 21 14 10.4986 2.5360 8.6779 22 1 9.1897 2.7532 8.0110 23 1 10.2817 1.8863 9.9955 24 1 11.1757 3.8428 8.8757 25 6 9.9286 -0.1548 4.2714 26 7 3.5254 -1.1996 -0.0051 27 6 2.2066 -1.1917 0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 1.6889 2.1423 -0.0004 32 1 4.1735 2.0591 -0.0001 33 1 6.1337 0.7679 -0.4367 34 1 6.0577 -1.0038 -0.5910 35 1 5.5831 -0.3240 2.1089 36 1 7.3579 -0.4558 3.6243 37 1 9.6700 -1.8233 1.3407 38 1 12.0682 -2.1606 1.7714 39 1 13.1055 -1.2116 3.7900 40 1 13.1161 1.4401 8.8537 41 1 9.3290 0.4074 4.9721 42 1 1.6672 -2.1273 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364080035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:17 Heat of formation + Delta-G solvation = 9.101590 kcal Electronic energy + Delta-G solvation = -25604.827214 eV Core-core repulsion = 21743.847163 eV Total energy + Delta-G solvation = -3860.980051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87874 -40.19313 -38.71094 -36.64107 -35.35421 -34.17530 -33.65480 -32.38590 -32.17653 -29.63000 -28.88859 -28.09484 -25.58687 -25.20632 -23.94126 -22.34170 -21.76714 -21.67601 -20.42386 -18.72590 -17.83276 -17.54208 -17.14908 -16.53867 -15.86801 -15.53787 -15.42069 -15.10998 -14.87381 -14.57445 -14.38113 -14.07238 -13.96707 -13.67756 -13.52543 -13.29186 -13.17456 -12.93093 -12.88410 -12.82570 -12.30282 -11.96768 -11.70763 -11.54308 -11.10958 -11.01472 -10.68954 -10.41528 -10.24255 -10.08210 -9.87563 -9.61948 -9.45426 -9.29501 -9.18622 -8.77753 -7.66032 -7.09113 -6.42432 -4.01805 0.52400 0.82055 2.10740 2.44602 2.68059 3.12238 3.13166 3.18787 3.34234 3.38224 3.78614 3.97578 4.22673 4.29320 4.31811 4.45840 4.49541 4.65447 4.86049 5.03960 5.07774 5.13548 5.20906 5.32304 5.33493 5.39997 5.53803 5.67607 5.74753 5.78742 6.05640 6.13438 6.21487 6.25210 6.30585 6.34026 6.59464 6.83310 7.05323 7.15162 7.31231 7.38503 7.47269 7.53976 7.87545 8.01845 8.04603 8.65158 9.03229 9.74773 10.75863 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.002303 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.232367 B =12155.636344 C =13755.823175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.133 4.133 3 C -0.079 4.079 4 C -0.146 4.146 5 C 0.101 3.899 6 C 0.194 3.806 7 N -0.741 5.741 8 C 0.706 3.294 9 O -0.569 6.569 10 N -0.681 5.681 11 C 0.199 3.801 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.178 6.178 17 C -0.390 4.390 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.258 4.258 26 N -0.464 5.464 27 C 0.098 3.902 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.402 0.598 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.269 0.731 41 H 0.129 0.871 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.402 -1.087 -14.176 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.167 4.167 5 C -0.036 4.036 6 C 0.069 3.931 7 N -0.398 5.398 8 C 0.406 3.594 9 O -0.445 6.445 10 N -0.328 5.328 11 C 0.105 3.895 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.466 4.466 18 H 0.107 0.893 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.280 4.280 26 N -0.172 5.172 27 C -0.060 4.060 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.237 0.763 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -22.871 -1.817 -14.782 27.293 hybrid contribution -1.815 1.459 1.295 2.665 sum -24.686 -0.358 -13.486 28.132 Atomic orbital electron populations 1.20749 0.90014 1.03367 1.02779 1.21032 0.97796 0.94294 1.00415 1.21537 0.93936 0.98383 0.96627 1.22072 0.95239 0.99140 1.00225 1.21206 0.96060 0.88730 0.97645 1.19889 0.86202 1.03698 0.83315 1.44973 1.05529 1.80468 1.08780 1.15824 0.82168 0.77927 0.83464 1.90957 1.54035 1.56441 1.43064 1.42564 1.07930 1.75620 1.06669 1.17174 0.81112 0.95834 0.95348 1.20577 0.94458 1.05745 1.01708 1.20530 0.94071 0.97871 0.95707 1.20240 0.99834 1.06151 0.95961 1.19062 0.90251 0.91264 0.87944 1.84020 1.38498 1.56321 1.29281 1.21305 0.99164 1.25503 1.00655 0.89259 1.25273 0.96690 0.98156 0.96464 1.70049 1.15458 1.42854 1.21440 0.85666 0.79176 0.79173 0.79475 1.19259 1.20201 1.20184 1.20779 0.95765 1.10265 1.01143 1.67519 1.08263 1.30931 1.10513 1.22716 0.89561 0.97663 0.96012 0.90698 0.90962 0.91175 0.84575 0.84289 0.89797 0.89642 0.77035 0.76319 0.86174 0.86628 0.86417 0.92127 0.85328 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.04 36.00 0.36 -0.03 16 2 C -0.13 -0.82 5.90 -104.48 -0.62 -1.44 16 3 C -0.08 -0.49 9.86 -39.28 -0.39 -0.88 16 4 C -0.15 -1.08 9.72 -39.44 -0.38 -1.46 16 5 C 0.10 0.94 6.15 -82.58 -0.51 0.43 16 6 C 0.19 2.03 5.98 -5.19 -0.03 2.00 16 7 N -0.74 -8.48 5.55 -66.41 -0.37 -8.85 16 8 C 0.71 11.05 8.30 -86.91 -0.72 10.33 16 9 O -0.57 -11.02 14.05 5.29 0.07 -10.94 16 10 N -0.68 -10.73 5.35 -14.24 -0.08 -10.80 16 11 C 0.20 3.93 6.27 -83.72 -0.52 3.40 16 12 C -0.20 -4.06 8.65 -39.35 -0.34 -4.40 16 13 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 14 C -0.20 -4.43 9.99 -39.36 -0.39 -4.82 16 15 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 16 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 17 C -0.39 -10.88 9.44 30.89 0.29 -10.59 16 18 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 19 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 20 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 21 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 C -0.26 -5.68 9.04 -39.21 -0.35 -6.03 16 26 N -0.46 -4.63 10.27 -9.47 -0.10 -4.73 16 27 C 0.10 0.75 10.86 -17.54 -0.19 0.56 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 30 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 31 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 3.69 8.48 -40.82 -0.35 3.35 16 36 H 0.40 5.03 8.83 -40.82 -0.36 4.67 16 37 H 0.12 2.37 6.43 -52.49 -0.34 2.03 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 41 H 0.13 2.78 5.72 -52.48 -0.30 2.48 16 42 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -34.98 365.77 -8.75 -43.73 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.98 Total: 10.05 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -4.55 Total: -9.71 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.22 Total: -48.97 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.07 Total: -16.04 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.98 -8.75 -43.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364080035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.827 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds