Wall clock time and date at job start Tue Mar 31 2020 14:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38670 * 120.41441 * 2 1 4 4 C 1.38623 * 118.41958 * 180.24559 * 3 2 1 5 5 C 1.38229 * 119.16024 * 359.74931 * 4 3 2 6 6 N 1.31854 * 120.76206 * 0.02562 * 5 4 3 7 7 C 1.31882 * 121.72666 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.61493 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47115 * 89.99963 * 8 7 6 10 10 N 1.46500 * 109.47408 * 179.97438 * 9 8 7 11 11 S 1.65593 * 119.99925 * 164.99913 * 10 9 8 12 12 O 1.42096 * 106.40460 * 311.46213 * 11 10 9 13 13 O 1.42108 * 106.40218 * 178.54273 * 11 10 9 14 14 N 1.65606 * 107.21842 * 65.00539 * 11 10 9 15 15 C 1.46497 * 119.99739 * 269.99739 * 14 11 10 16 16 C 1.46497 * 120.00188 * 89.99816 * 14 11 10 17 17 H 1.09007 * 109.47078 * 359.97438 * 16 14 11 18 18 C 1.53000 * 109.47021 * 240.00233 * 16 14 11 19 19 C 1.50694 * 109.47115 * 120.00014 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.09001 * 109.46981 * 270.24927 * 1 2 3 28 28 H 1.08998 * 109.47660 * 30.24704 * 1 2 3 29 29 H 1.09008 * 109.47193 * 150.25122 * 1 2 3 30 30 H 1.08003 * 120.79470 * 359.97423 * 3 2 1 31 31 H 1.08000 * 120.42212 * 179.73028 * 4 3 2 32 32 H 1.08000 * 119.61767 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47407 * 329.99721 * 8 7 6 34 34 H 1.09004 * 109.46996 * 209.99906 * 8 7 6 35 35 H 1.09006 * 109.46545 * 59.99557 * 9 8 7 36 36 H 1.09004 * 109.47142 * 299.99854 * 9 8 7 37 37 H 0.97005 * 119.99538 * 345.00674 * 10 9 8 38 38 H 1.09001 * 109.46905 * 270.00036 * 15 14 11 39 39 H 1.09005 * 109.47144 * 29.99977 * 15 14 11 40 40 H 1.08993 * 109.47302 * 150.00165 * 15 14 11 41 41 H 1.08998 * 109.47089 * 59.99825 * 18 16 14 42 42 H 1.08995 * 109.47131 * 179.97438 * 18 16 14 43 43 H 1.09002 * 109.47106 * 299.99878 * 18 16 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5944 1.1476 -0.0052 5 6 4.2255 -0.0822 -0.0049 6 7 3.5254 -1.1995 -0.0003 7 6 2.2066 -1.1915 0.0047 8 6 1.4540 -2.4972 0.0093 9 6 1.2049 -2.9371 1.4534 10 7 0.4727 -4.2061 1.4579 11 16 0.3860 -5.1069 2.8447 12 8 1.7121 -5.1995 3.3467 13 8 -0.4092 -6.2434 2.5358 14 7 -0.4722 -4.2225 3.9509 15 6 0.2250 -3.3014 4.8519 16 6 -1.9285 -4.3612 4.0286 17 1 -2.2647 -5.0852 3.2863 18 6 -2.5852 -3.0070 3.7533 19 6 -2.3151 -4.8362 5.4055 20 1 -1.5524 -5.0172 6.1483 21 6 -3.6427 -5.0409 5.7166 22 7 -4.5716 -4.8210 4.8119 23 14 -4.1219 -5.6305 7.4231 24 1 -5.5982 -5.7709 7.5019 25 1 -3.4842 -6.9447 7.6900 26 1 -3.6643 -4.6439 8.4343 27 1 -0.3633 0.0045 1.0277 28 1 -0.3634 0.8877 -0.5176 29 1 -0.3634 -0.8923 -0.5100 30 1 1.6889 2.1424 -0.0004 31 1 4.1734 2.0593 -0.0098 32 1 5.3046 -0.1284 -0.0086 33 1 2.0416 -3.2571 -0.5058 34 1 0.4995 -2.3681 -0.5010 35 1 0.6173 -2.1771 1.9685 36 1 2.1594 -3.0662 1.9638 37 1 0.0389 -4.5185 0.6485 38 1 0.5065 -3.8284 5.7635 39 1 1.1207 -2.9211 4.3607 40 1 -0.4334 -2.4695 5.1017 41 1 -2.3055 -2.6634 2.7574 42 1 -3.6687 -3.1102 3.8106 43 1 -2.2491 -2.2826 4.4952 44 1 -5.5055 -4.9653 5.0308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364846686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:20 Heat of formation + Delta-G solvation = -46.976864 kcal Electronic energy + Delta-G solvation = -26459.550230 eV Core-core repulsion = 22731.582387 eV Total energy + Delta-G solvation = -3727.967844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61692 -36.69147 -36.22928 -35.95909 -35.18840 -33.85349 -32.80978 -32.56750 -29.13537 -29.06671 -27.31922 -25.58802 -25.12527 -24.03366 -22.58254 -21.53230 -20.75352 -18.81767 -17.37087 -16.99369 -16.83481 -16.52509 -16.45121 -15.80654 -15.11895 -15.05295 -14.59196 -14.38003 -14.16724 -13.50102 -13.45183 -13.30539 -13.14658 -12.96976 -12.82664 -12.74687 -12.29382 -12.00732 -11.84922 -11.71097 -11.49783 -11.33574 -11.30974 -11.24774 -11.20565 -10.95779 -10.79199 -10.47339 -10.27975 -10.00631 -9.94491 -9.62434 -9.34106 -9.22325 -8.99360 -8.44562 -7.96781 -6.06655 -4.12905 0.83967 1.04079 1.25462 3.31127 3.35266 3.38615 3.45582 3.57716 4.05644 4.18701 4.41275 4.46152 4.55952 4.65575 4.76602 4.87886 5.03070 5.08530 5.15596 5.24922 5.30665 5.38818 5.45538 5.50885 5.60454 5.70211 5.75956 5.85392 5.96772 6.05681 6.12370 6.14601 6.38095 6.49093 6.62570 6.76210 6.79199 7.01676 7.16692 7.49620 7.64483 7.79671 7.79837 8.04804 8.28643 8.89177 9.52789 10.99046 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003301 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.795019 B = 8481.235200 C = 9119.841848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.128 4.128 3 C -0.077 4.077 4 C -0.174 4.174 5 C 0.094 3.906 6 N -0.476 5.476 7 C 0.131 3.869 8 C -0.081 4.081 9 C 0.131 3.869 10 N -1.133 6.133 11 S 2.780 3.220 12 O -0.995 6.995 13 O -0.974 6.974 14 N -0.990 5.990 15 C 0.109 3.891 16 C 0.268 3.732 17 H 0.059 0.941 18 C -0.147 4.147 19 C -0.520 4.520 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.011 0.989 42 H 0.092 0.908 43 H 0.033 0.967 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.374 13.682 -11.400 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.130 4.130 3 C -0.103 4.103 4 C -0.194 4.194 5 C -0.064 4.064 6 N -0.184 5.184 7 C -0.007 4.007 8 C -0.120 4.120 9 C 0.004 3.996 10 N -0.892 5.892 11 S 2.789 3.211 12 O -0.978 6.978 13 O -0.958 6.958 14 N -0.833 5.833 15 C -0.038 4.038 16 C 0.166 3.834 17 H 0.077 0.923 18 C -0.207 4.207 19 C -0.560 4.560 20 H 0.080 0.920 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.212 1.212 25 H -0.202 1.202 26 H -0.203 1.203 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.245 0.755 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.030 0.970 42 H 0.111 0.889 43 H 0.052 0.948 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.101 12.061 -11.116 20.383 hybrid contribution -1.015 0.978 0.545 1.511 sum 11.086 13.039 -10.571 20.116 Atomic orbital electron populations 1.20886 0.89889 1.03342 1.03406 1.20785 0.97802 0.93489 1.00935 1.21492 0.94167 0.98093 0.96542 1.22133 0.95309 0.99629 1.02332 1.22737 1.00303 0.87617 0.95721 1.67513 1.07696 1.31587 1.11587 1.20943 0.89663 0.94409 0.95704 1.20785 1.00138 0.93418 0.97681 1.21046 0.96612 0.85334 0.96619 1.56211 1.68119 1.35189 1.29660 1.01938 0.73002 0.73451 0.72751 1.93541 1.38369 1.86363 1.79567 1.93616 1.70386 1.47497 1.84271 1.57689 1.19150 1.58539 1.47897 1.21158 0.94944 0.93798 0.93861 1.18719 0.71884 0.94395 0.98443 0.92312 1.22115 1.04683 0.97757 0.96126 1.21312 0.92280 1.44950 0.97438 0.92005 1.24904 0.96348 0.95205 0.97405 1.69847 1.00731 1.48790 1.33615 0.86557 0.77223 0.79459 0.84161 1.21238 1.20151 1.20261 0.90156 0.91328 0.90506 0.84847 0.84881 0.82781 0.89108 0.89048 0.91752 0.90308 0.75511 0.93224 0.93484 0.90997 0.97033 0.88909 0.94831 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.62 36.01 0.35 -0.59 16 2 C -0.13 -1.22 5.90 -104.48 -0.62 -1.84 16 3 C -0.08 -0.63 9.86 -39.28 -0.39 -1.02 16 4 C -0.17 -1.37 10.11 -39.44 -0.40 -1.77 16 5 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 6 N -0.48 -5.71 10.27 -9.47 -0.10 -5.81 16 7 C 0.13 1.46 6.03 -82.59 -0.50 0.97 16 8 C -0.08 -0.86 5.25 -27.88 -0.15 -1.00 16 9 C 0.13 1.68 6.23 -4.04 -0.03 1.65 16 10 N -1.13 -16.46 6.05 -10.61 -0.06 -16.52 16 11 S 2.78 54.66 6.09 -107.50 -0.66 54.01 16 12 O -1.00 -21.13 16.68 -57.17 -0.95 -22.09 16 13 O -0.97 -22.69 16.70 -57.17 -0.95 -23.65 16 14 N -0.99 -20.39 3.12 -115.86 -0.36 -20.75 16 15 C 0.11 1.94 9.53 59.85 0.57 2.51 16 16 C 0.27 6.49 2.62 -69.09 -0.18 6.30 16 17 H 0.06 1.57 6.91 -51.92 -0.36 1.22 16 18 C -0.15 -3.24 8.95 37.16 0.33 -2.91 16 19 C -0.52 -13.99 8.37 -34.44 -0.29 -14.27 16 20 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.08 0.58 5.95 -51.92 -0.31 0.27 16 30 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.79 5.93 -51.93 -0.31 0.48 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.11 7.75 -51.93 -0.40 0.71 16 37 H 0.41 5.07 8.65 -34.47 -0.30 4.77 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 40 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 41 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 43 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -33.75 371.16 -9.89 -43.64 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.42 Total: 3.10 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.58 Total: -9.65 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: 0.10 Total: -67.07 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.91 Total: -45.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.66 Total: 54.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.75 -9.89 -43.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364846686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.341 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds