Wall clock time and date at job start Tue Mar 31 2020 14:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38670 * 120.41441 * 2 1 4 4 C 1.38623 * 118.41958 * 180.24559 * 3 2 1 5 5 C 1.38229 * 119.16024 * 359.74931 * 4 3 2 6 6 N 1.31854 * 120.76206 * 0.02562 * 5 4 3 7 7 C 1.31882 * 121.72666 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.61493 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47115 * 89.99963 * 8 7 6 10 10 N 1.46500 * 109.47408 * 179.97438 * 9 8 7 11 11 S 1.65593 * 119.99925 * 164.99913 * 10 9 8 12 12 O 1.42096 * 106.40460 * 311.46213 * 11 10 9 13 13 O 1.42108 * 106.40218 * 178.54273 * 11 10 9 14 14 N 1.65606 * 107.21842 * 65.00539 * 11 10 9 15 15 C 1.46497 * 119.99739 * 269.99739 * 14 11 10 16 16 C 1.46497 * 120.00188 * 89.99816 * 14 11 10 17 17 H 1.09007 * 109.47078 * 359.97438 * 16 14 11 18 18 C 1.53000 * 109.47021 * 240.00233 * 16 14 11 19 19 C 1.50694 * 109.47115 * 120.00014 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.09001 * 109.46981 * 270.24927 * 1 2 3 28 28 H 1.08998 * 109.47660 * 30.24704 * 1 2 3 29 29 H 1.09008 * 109.47193 * 150.25122 * 1 2 3 30 30 H 1.08003 * 120.79470 * 359.97423 * 3 2 1 31 31 H 1.08000 * 120.42212 * 179.73028 * 4 3 2 32 32 H 1.08000 * 119.61767 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47407 * 329.99721 * 8 7 6 34 34 H 1.09004 * 109.46996 * 209.99906 * 8 7 6 35 35 H 1.09006 * 109.46545 * 59.99557 * 9 8 7 36 36 H 1.09004 * 109.47142 * 299.99854 * 9 8 7 37 37 H 0.97005 * 119.99538 * 345.00674 * 10 9 8 38 38 H 1.09001 * 109.46905 * 270.00036 * 15 14 11 39 39 H 1.09005 * 109.47144 * 29.99977 * 15 14 11 40 40 H 1.08993 * 109.47302 * 150.00165 * 15 14 11 41 41 H 1.08998 * 109.47089 * 59.99825 * 18 16 14 42 42 H 1.08995 * 109.47131 * 179.97438 * 18 16 14 43 43 H 1.09002 * 109.47106 * 299.99878 * 18 16 14 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5944 1.1476 -0.0052 5 6 4.2255 -0.0822 -0.0049 6 7 3.5254 -1.1995 -0.0003 7 6 2.2066 -1.1915 0.0047 8 6 1.4540 -2.4972 0.0093 9 6 1.2049 -2.9371 1.4534 10 7 0.4727 -4.2061 1.4579 11 16 0.3860 -5.1069 2.8447 12 8 1.7121 -5.1995 3.3467 13 8 -0.4092 -6.2434 2.5358 14 7 -0.4722 -4.2225 3.9509 15 6 0.2250 -3.3014 4.8519 16 6 -1.9285 -4.3612 4.0286 17 1 -2.2647 -5.0852 3.2863 18 6 -2.5852 -3.0070 3.7533 19 6 -2.3151 -4.8362 5.4055 20 1 -1.5524 -5.0172 6.1483 21 6 -3.6427 -5.0409 5.7166 22 7 -4.5716 -4.8210 4.8119 23 14 -4.1219 -5.6305 7.4231 24 1 -5.5982 -5.7709 7.5019 25 1 -3.4842 -6.9447 7.6900 26 1 -3.6643 -4.6439 8.4343 27 1 -0.3633 0.0045 1.0277 28 1 -0.3634 0.8877 -0.5176 29 1 -0.3634 -0.8923 -0.5100 30 1 1.6889 2.1424 -0.0004 31 1 4.1734 2.0593 -0.0098 32 1 5.3046 -0.1284 -0.0086 33 1 2.0416 -3.2571 -0.5058 34 1 0.4995 -2.3681 -0.5010 35 1 0.6173 -2.1771 1.9685 36 1 2.1594 -3.0662 1.9638 37 1 0.0389 -4.5185 0.6485 38 1 0.5065 -3.8284 5.7635 39 1 1.1207 -2.9211 4.3607 40 1 -0.4334 -2.4695 5.1017 41 1 -2.3055 -2.6634 2.7574 42 1 -3.6687 -3.1102 3.8106 43 1 -2.2491 -2.2826 4.4952 44 1 -5.5055 -4.9653 5.0308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364846686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:19 Heat of formation + Delta-G solvation = -71.178039 kcal Electronic energy + Delta-G solvation = -26460.599672 eV Core-core repulsion = 22731.582387 eV Total energy + Delta-G solvation = -3729.017286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29856 -38.35331 -37.90707 -37.09335 -36.89207 -34.55872 -34.51242 -33.62097 -30.89723 -29.96069 -27.97425 -27.26889 -26.99467 -24.93608 -23.28143 -22.62349 -22.21508 -20.31734 -18.87207 -18.56660 -18.15950 -17.71979 -17.44687 -17.09550 -16.76579 -16.05815 -15.74093 -15.46756 -15.23089 -15.02622 -14.78447 -14.54708 -14.24621 -13.93958 -13.74150 -13.62049 -13.47869 -13.38050 -13.26572 -13.18505 -13.11713 -12.99793 -12.80890 -12.74689 -12.58704 -12.48393 -12.20927 -12.12486 -12.00730 -11.85383 -11.13452 -10.61495 -10.52265 -10.46403 -10.32625 -9.71502 -9.64148 -8.10451 -6.23496 -0.34287 0.19131 0.39854 1.43535 1.45624 1.52427 2.02969 2.44330 2.62637 2.84414 3.17847 3.36269 3.48726 3.78109 3.91303 4.00548 4.01446 4.07625 4.17856 4.26347 4.44179 4.56498 4.65484 4.67298 4.77536 4.82542 4.85317 4.89448 4.93542 5.02870 5.04142 5.09169 5.18199 5.18791 5.28928 5.33755 5.42763 5.63340 5.72214 5.86377 5.89763 6.07709 6.21815 6.32908 6.83546 7.10571 7.45188 8.93390 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003301 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.795019 B = 8481.235200 C = 9119.841848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.134 4.134 3 C -0.082 4.082 4 C -0.167 4.167 5 C 0.076 3.924 6 N -0.510 5.510 7 C 0.107 3.893 8 C -0.074 4.074 9 C 0.129 3.871 10 N -1.116 6.116 11 S 2.796 3.204 12 O -1.013 7.013 13 O -1.015 7.015 14 N -0.995 5.995 15 C 0.103 3.897 16 C 0.273 3.727 17 H 0.027 0.973 18 C -0.134 4.134 19 C -0.541 4.541 20 H 0.054 0.946 21 C 0.020 3.980 22 N -0.912 5.912 23 Si 0.953 3.047 24 H -0.281 1.281 25 H -0.281 1.281 26 H -0.267 1.267 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.424 0.576 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.793 15.983 -11.716 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.136 4.136 3 C -0.108 4.108 4 C -0.187 4.187 5 C -0.081 4.081 6 N -0.219 5.219 7 C -0.031 4.031 8 C -0.114 4.114 9 C 0.003 3.997 10 N -0.879 5.879 11 S 2.805 3.195 12 O -0.996 6.996 13 O -0.999 6.999 14 N -0.837 5.837 15 C -0.042 4.042 16 C 0.169 3.831 17 H 0.044 0.956 18 C -0.194 4.194 19 C -0.581 4.581 20 H 0.072 0.928 21 C -0.180 4.180 22 N -0.551 5.551 23 Si 0.779 3.221 24 H -0.206 1.206 25 H -0.207 1.207 26 H -0.192 1.192 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.528 14.367 -11.430 22.226 hybrid contribution -1.037 0.329 0.578 1.232 sum 11.491 14.696 -10.852 21.582 Atomic orbital electron populations 1.20926 0.88874 1.04275 1.03456 1.20995 0.98632 0.93438 1.00525 1.21886 0.94537 0.98728 0.95653 1.22480 0.95568 1.00138 1.00489 1.23163 1.01302 0.87802 0.95848 1.67459 1.08443 1.33207 1.12786 1.21000 0.89728 0.94945 0.97388 1.20720 1.01147 0.93478 0.96007 1.21192 0.95778 0.84278 0.98460 1.55713 1.68205 1.35637 1.28389 1.01208 0.72136 0.72971 0.73188 1.93515 1.38964 1.86685 1.80416 1.93555 1.71259 1.50101 1.84992 1.57554 1.17828 1.59121 1.49223 1.21339 0.95964 0.93446 0.93478 1.18424 0.73853 0.94688 0.96177 0.95563 1.21902 1.02612 0.96694 0.98163 1.21643 0.92444 1.45343 0.98648 0.92765 1.25597 0.96434 0.95403 1.00608 1.69958 1.00884 1.49265 1.34987 0.85696 0.77052 0.78782 0.80603 1.20606 1.20674 1.19165 0.90419 0.89700 0.90359 0.82292 0.81913 0.81053 0.89657 0.87087 0.90582 0.91711 0.73980 0.94119 0.90773 0.90017 0.94104 0.91513 0.93861 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.62 71.24 0.69 -0.88 16 2 C -0.13 -2.26 5.90 -19.78 -0.12 -2.38 16 3 C -0.08 -1.12 9.86 22.47 0.22 -0.90 16 4 C -0.17 -2.17 10.11 22.36 0.23 -1.95 16 5 C 0.08 1.32 11.18 84.69 0.95 2.26 16 6 N -0.51 -11.84 10.27 -183.89 -1.89 -13.73 16 7 C 0.11 2.26 6.03 42.54 0.26 2.52 16 8 C -0.07 -1.48 5.25 29.85 0.16 -1.33 16 9 C 0.13 3.15 6.23 86.38 0.54 3.68 16 10 N -1.12 -31.51 6.05 -187.47 -1.14 -32.64 16 11 S 2.80 110.09 6.09 -56.49 -0.34 109.74 16 12 O -1.01 -42.92 16.68 -128.00 -2.14 -45.06 16 13 O -1.01 -48.34 16.70 -128.00 -2.14 -50.48 16 14 N -1.00 -40.66 3.12 -520.46 -1.62 -42.28 16 15 C 0.10 3.58 9.53 127.77 1.22 4.79 16 16 C 0.27 13.23 2.62 44.24 0.12 13.34 16 17 H 0.03 1.45 6.91 -2.38 -0.02 1.44 16 18 C -0.13 -5.78 8.95 71.98 0.64 -5.13 16 19 C -0.54 -29.32 8.37 25.60 0.21 -29.10 16 20 H 0.05 2.94 7.65 -2.91 -0.02 2.92 16 21 C 0.02 1.06 5.30 84.66 0.45 1.51 16 22 N -0.91 -50.69 11.32 21.45 0.24 -50.45 16 23 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 29 H 0.08 0.99 5.95 -2.38 -0.01 0.98 16 30 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.71 5.93 -2.38 -0.01 1.70 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.06 1.78 7.75 -2.38 -0.02 1.76 16 37 H 0.42 10.06 8.65 -96.74 -0.84 9.22 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 2.13 7.79 -2.38 -0.02 2.12 16 40 H 0.08 2.65 6.43 -2.39 -0.02 2.63 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 3.26 6.07 -2.39 -0.01 3.24 16 43 H 0.04 1.73 6.66 -2.39 -0.02 1.72 16 44 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -73.17 371.16 -1.26 -74.43 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.18 Total: 18.73 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.56 Total: -13.55 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -4.41 Total: -139.11 kcal Atomic # 8 Polarization: -91.26 SS G_CDS: -4.27 Total: -95.54 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 110.09 SS G_CDS: -0.34 Total: 109.74 kcal Total: -73.17 -1.26 -74.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364846686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.254 kcal (2) G-P(sol) polarization free energy of solvation -73.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds