Wall clock time and date at job start Tue Mar 31 2020 14:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38681 * 120.41577 * 2 1 4 4 C 1.38631 * 118.42067 * 180.24325 * 3 2 1 5 5 C 1.38224 * 119.15726 * 359.75407 * 4 3 2 6 6 N 1.31855 * 120.76961 * 0.02562 * 5 4 3 7 7 C 1.31888 * 121.72360 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.61702 * 179.97438 * 7 6 5 9 9 C 1.52991 * 109.47025 * 90.00219 * 8 7 6 10 10 N 1.46496 * 109.47449 * 180.02562 * 9 8 7 11 11 S 1.65599 * 120.00406 * 164.99931 * 10 9 8 12 12 O 1.42092 * 106.40305 * 311.45915 * 11 10 9 13 13 O 1.42104 * 106.40534 * 178.54120 * 11 10 9 14 14 N 1.65596 * 107.21899 * 65.00128 * 11 10 9 15 15 C 1.46508 * 119.99992 * 270.00259 * 14 11 10 16 16 C 1.46503 * 120.00083 * 89.99694 * 14 11 10 17 17 H 1.09000 * 109.47399 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46839 * 120.00020 * 16 14 11 19 19 C 1.50696 * 109.47460 * 240.00081 * 16 14 11 20 20 H 1.08002 * 119.99821 * 354.49228 * 19 16 14 21 21 C 1.37869 * 120.00229 * 174.49328 * 19 16 14 22 22 N 1.31515 * 120.00095 * 164.52587 * 21 19 16 23 23 Si 1.86802 * 120.00055 * 344.79770 * 21 19 16 24 24 H 1.48500 * 109.47226 * 269.72753 * 23 21 19 25 25 H 1.48504 * 109.46735 * 29.72658 * 23 21 19 26 26 H 1.48497 * 109.47182 * 149.72492 * 23 21 19 27 27 H 1.08999 * 109.47384 * 270.24416 * 1 2 3 28 28 H 1.09001 * 109.47855 * 30.25116 * 1 2 3 29 29 H 1.09001 * 109.46824 * 150.25051 * 1 2 3 30 30 H 1.08001 * 120.79000 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.42143 * 179.73420 * 4 3 2 32 32 H 1.08002 * 119.61750 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47080 * 330.00367 * 8 7 6 34 34 H 1.08999 * 109.46810 * 210.00243 * 8 7 6 35 35 H 1.08997 * 109.47438 * 60.00141 * 9 8 7 36 36 H 1.09004 * 109.47678 * 300.00016 * 9 8 7 37 37 H 0.97003 * 119.99910 * 344.99667 * 10 9 8 38 38 H 1.08998 * 109.46944 * 269.99791 * 15 14 11 39 39 H 1.08996 * 109.46907 * 29.99355 * 15 14 11 40 40 H 1.08998 * 109.46952 * 149.99713 * 15 14 11 41 41 H 1.08998 * 109.47107 * 173.76534 * 18 16 14 42 42 H 1.08996 * 109.47394 * 293.77303 * 18 16 14 43 43 H 1.09007 * 109.46851 * 53.77462 * 18 16 14 44 44 H 0.96993 * 120.00377 * 355.18434 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 -0.0052 5 6 4.2255 -0.0821 -0.0049 6 7 3.5255 -1.1995 -0.0004 7 6 2.2067 -1.1915 0.0046 8 6 1.4541 -2.4971 0.0091 9 6 1.2048 -2.9371 1.4530 10 7 0.4737 -4.2066 1.4575 11 16 0.3872 -5.1075 2.8443 12 8 1.7132 -5.1990 3.3467 13 8 -0.4070 -6.2446 2.5352 14 7 -0.4720 -4.2237 3.9501 15 6 0.2242 -3.3019 4.8513 16 6 -1.9283 -4.3635 4.0273 17 1 -2.2636 -5.0884 3.2856 18 6 -2.3208 -4.8461 5.4252 19 6 -2.5760 -3.0302 3.7559 20 1 -1.9652 -2.1477 3.6350 21 6 -3.9484 -2.9368 3.6620 22 7 -4.5338 -1.7612 3.7309 23 14 -4.9769 -4.4810 3.4445 24 1 -5.1512 -4.7598 1.9964 25 1 -4.2898 -5.6283 4.0903 26 1 -6.3071 -4.2825 4.0740 27 1 -0.3634 0.0044 1.0276 28 1 -0.3635 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 1.6889 2.1424 -0.0004 31 1 4.1734 2.0594 -0.0097 32 1 5.3046 -0.1284 -0.0085 33 1 2.0418 -3.2571 -0.5060 34 1 0.4997 -2.3680 -0.5013 35 1 0.6171 -2.1773 1.9681 36 1 2.1592 -3.0662 1.9635 37 1 0.0403 -4.5195 0.6481 38 1 0.5059 -3.8286 5.7631 39 1 1.1197 -2.9210 4.3604 40 1 -0.4350 -2.4705 5.1008 41 1 -3.4068 -4.8442 5.5185 42 1 -1.9445 -5.8573 5.5795 43 1 -1.8908 -4.1802 6.1735 44 1 -4.0080 -0.9677 3.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364846690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:26 Heat of formation + Delta-G solvation = -47.452380 kcal Electronic energy + Delta-G solvation = -26758.218239 eV Core-core repulsion = 23030.229775 eV Total energy + Delta-G solvation = -3727.988464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53062 -36.83909 -36.40170 -35.96632 -35.36111 -33.75247 -32.74624 -32.62313 -29.86264 -29.03956 -27.20970 -25.73080 -24.67442 -23.97239 -22.48653 -21.44926 -20.67444 -18.89883 -17.61027 -17.31501 -16.94293 -16.86978 -16.47767 -16.01223 -15.09932 -14.97256 -14.46590 -14.27316 -13.95770 -13.69045 -13.40792 -13.24299 -13.22171 -12.94117 -12.83066 -12.63185 -12.28529 -12.09431 -12.00457 -11.81163 -11.76431 -11.63899 -11.54818 -11.36269 -11.31355 -11.17908 -10.75365 -10.52968 -10.10366 -9.85701 -9.64385 -9.55428 -9.30825 -9.14692 -8.90186 -8.47282 -8.12670 -6.52983 -4.19568 0.91447 1.11186 1.18260 3.33876 3.38398 3.43146 3.55680 3.62412 4.01055 4.18812 4.42093 4.55337 4.64820 4.75735 4.84268 4.86995 5.01506 5.15537 5.17068 5.23182 5.41693 5.45244 5.50910 5.59308 5.67056 5.76565 5.85788 5.98002 6.03901 6.06422 6.12565 6.17575 6.21177 6.38233 6.46524 6.55730 6.58062 6.66992 6.95167 7.18575 7.30517 7.50267 7.86687 7.91588 8.27370 8.79881 9.48303 10.83113 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.004300 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.695197 B = 6509.600997 C = 7727.589557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.124 4.124 3 C -0.078 4.078 4 C -0.174 4.174 5 C 0.091 3.909 6 N -0.476 5.476 7 C 0.131 3.869 8 C -0.080 4.080 9 C 0.132 3.868 10 N -1.126 6.126 11 S 2.784 3.216 12 O -0.994 6.994 13 O -0.983 6.983 14 N -0.985 5.985 15 C 0.106 3.894 16 C 0.244 3.756 17 H 0.050 0.950 18 C -0.152 4.152 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.038 3.962 22 N -0.902 5.902 23 Si 1.029 2.971 24 H -0.283 1.283 25 H -0.267 1.267 26 H -0.284 1.284 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.049 0.951 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 4.884 -7.138 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.194 4.194 5 C -0.066 4.066 6 N -0.185 5.185 7 C -0.008 4.008 8 C -0.120 4.120 9 C 0.005 3.995 10 N -0.885 5.885 11 S 2.792 3.208 12 O -0.977 6.977 13 O -0.968 6.968 14 N -0.827 5.827 15 C -0.041 4.041 16 C 0.139 3.861 17 H 0.068 0.932 18 C -0.212 4.212 19 C -0.646 4.646 20 H 0.083 0.917 21 C -0.168 4.168 22 N -0.535 5.535 23 Si 0.857 3.143 24 H -0.210 1.210 25 H -0.192 1.192 26 H -0.210 1.210 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.831 2.748 -7.046 14.042 hybrid contribution 0.835 1.954 -0.164 2.132 sum 12.667 4.703 -7.210 15.315 Atomic orbital electron populations 1.20893 0.89632 1.03353 1.03716 1.20824 0.97919 0.93451 1.00407 1.21509 0.94148 0.98152 0.96551 1.22122 0.95291 0.99592 1.02389 1.22709 1.00226 0.87649 0.96028 1.67504 1.07702 1.31579 1.11693 1.20927 0.89607 0.94423 0.95831 1.20767 1.00201 0.93356 0.97631 1.21045 0.96330 0.85344 0.96766 1.55951 1.68140 1.35092 1.29334 1.01760 0.72930 0.73294 0.72786 1.93555 1.38034 1.86507 1.79612 1.93583 1.70723 1.48044 1.84405 1.57498 1.18166 1.58121 1.48904 1.21226 0.95567 0.94165 0.93111 1.19036 0.74611 0.98198 0.94221 0.93248 1.22410 1.01075 0.98185 0.99492 1.22202 0.93591 0.93626 1.55153 0.91711 1.25625 0.95586 1.02505 0.93073 1.70824 1.38970 0.99404 1.44308 0.84320 0.76374 0.75996 0.77659 1.20976 1.19188 1.20977 0.89928 0.91340 0.90466 0.84830 0.84918 0.82845 0.89226 0.88919 0.91393 0.90511 0.75355 0.93706 0.93118 0.90102 0.92275 0.95367 0.93212 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.62 36.00 0.35 -0.93 16 2 C -0.12 -1.41 5.90 -104.48 -0.62 -2.03 16 3 C -0.08 -0.76 9.86 -39.27 -0.39 -1.15 16 4 C -0.17 -1.58 10.11 -39.44 -0.40 -1.98 16 5 C 0.09 0.95 11.18 -17.55 -0.20 0.76 16 6 N -0.48 -6.23 10.27 -9.47 -0.10 -6.32 16 7 C 0.13 1.65 6.03 -82.59 -0.50 1.15 16 8 C -0.08 -0.97 5.25 -27.89 -0.15 -1.12 16 9 C 0.13 1.88 6.23 -4.05 -0.03 1.85 16 10 N -1.13 -17.40 6.05 -10.62 -0.06 -17.46 16 11 S 2.78 53.10 6.09 -107.50 -0.66 52.45 16 12 O -0.99 -20.24 16.68 -57.18 -0.95 -21.19 16 13 O -0.98 -21.26 16.70 -57.18 -0.95 -22.21 16 14 N -0.98 -19.69 3.12 -115.85 -0.36 -20.05 16 15 C 0.11 1.86 9.16 59.85 0.55 2.41 16 16 C 0.24 5.55 2.17 -69.08 -0.15 5.40 16 17 H 0.05 1.18 5.54 -51.93 -0.29 0.89 16 18 C -0.15 -3.26 8.57 37.16 0.32 -2.94 16 19 C -0.61 -15.30 8.37 -34.45 -0.29 -15.59 16 20 H 0.06 1.71 7.38 -52.49 -0.39 1.33 16 21 C 0.04 1.02 5.33 -17.82 -0.09 0.93 16 22 N -0.90 -25.65 13.70 55.43 0.76 -24.89 16 23 Si 1.03 23.87 26.17 -169.99 -4.45 19.42 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -5.79 5.53 56.52 0.31 -5.48 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.08 0.81 5.95 -51.93 -0.31 0.50 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 0.98 5.93 -51.93 -0.31 0.68 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 37 H 0.41 5.51 8.65 -34.47 -0.30 5.21 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 40 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 41 H 0.06 1.28 5.06 -51.93 -0.26 1.02 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 1.00 7.47 -51.93 -0.39 0.62 16 44 H 0.27 7.56 8.73 -40.82 -0.36 7.21 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -32.54 366.48 -9.29 -41.84 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.45 Total: 6.14 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.59 Total: -13.23 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: 0.24 Total: -68.73 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.91 Total: -43.41 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.45 Total: 19.42 kcal Atomic # 16 Polarization: 53.10 SS G_CDS: -0.66 Total: 52.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.54 -9.29 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364846690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.616 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds