Wall clock time and date at job start Tue Mar 31 2020 14:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38681 * 120.41577 * 2 1 4 4 C 1.38631 * 118.42067 * 180.24325 * 3 2 1 5 5 C 1.38224 * 119.15726 * 359.75407 * 4 3 2 6 6 N 1.31855 * 120.76961 * 0.02562 * 5 4 3 7 7 C 1.31888 * 121.72360 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.61702 * 179.97438 * 7 6 5 9 9 C 1.52991 * 109.47025 * 90.00219 * 8 7 6 10 10 N 1.46496 * 109.47449 * 180.02562 * 9 8 7 11 11 S 1.65599 * 120.00406 * 164.99931 * 10 9 8 12 12 O 1.42092 * 106.40305 * 311.45915 * 11 10 9 13 13 O 1.42104 * 106.40534 * 178.54120 * 11 10 9 14 14 N 1.65596 * 107.21899 * 65.00128 * 11 10 9 15 15 C 1.46508 * 119.99992 * 270.00259 * 14 11 10 16 16 C 1.46503 * 120.00083 * 89.99694 * 14 11 10 17 17 H 1.09000 * 109.47399 * 0.02562 * 16 14 11 18 18 C 1.53003 * 109.46839 * 120.00020 * 16 14 11 19 19 C 1.50696 * 109.47460 * 240.00081 * 16 14 11 20 20 H 1.08002 * 119.99821 * 354.49228 * 19 16 14 21 21 C 1.37869 * 120.00229 * 174.49328 * 19 16 14 22 22 N 1.31515 * 120.00095 * 164.52587 * 21 19 16 23 23 Si 1.86802 * 120.00055 * 344.79770 * 21 19 16 24 24 H 1.48500 * 109.47226 * 269.72753 * 23 21 19 25 25 H 1.48504 * 109.46735 * 29.72658 * 23 21 19 26 26 H 1.48497 * 109.47182 * 149.72492 * 23 21 19 27 27 H 1.08999 * 109.47384 * 270.24416 * 1 2 3 28 28 H 1.09001 * 109.47855 * 30.25116 * 1 2 3 29 29 H 1.09001 * 109.46824 * 150.25051 * 1 2 3 30 30 H 1.08001 * 120.79000 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.42143 * 179.73420 * 4 3 2 32 32 H 1.08002 * 119.61750 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.47080 * 330.00367 * 8 7 6 34 34 H 1.08999 * 109.46810 * 210.00243 * 8 7 6 35 35 H 1.08997 * 109.47438 * 60.00141 * 9 8 7 36 36 H 1.09004 * 109.47678 * 300.00016 * 9 8 7 37 37 H 0.97003 * 119.99910 * 344.99667 * 10 9 8 38 38 H 1.08998 * 109.46944 * 269.99791 * 15 14 11 39 39 H 1.08996 * 109.46907 * 29.99355 * 15 14 11 40 40 H 1.08998 * 109.46952 * 149.99713 * 15 14 11 41 41 H 1.08998 * 109.47107 * 173.76534 * 18 16 14 42 42 H 1.08996 * 109.47394 * 293.77303 * 18 16 14 43 43 H 1.09007 * 109.46851 * 53.77462 * 18 16 14 44 44 H 0.96993 * 120.00377 * 355.18434 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 -0.0052 5 6 4.2255 -0.0821 -0.0049 6 7 3.5255 -1.1995 -0.0004 7 6 2.2067 -1.1915 0.0046 8 6 1.4541 -2.4971 0.0091 9 6 1.2048 -2.9371 1.4530 10 7 0.4737 -4.2066 1.4575 11 16 0.3872 -5.1075 2.8443 12 8 1.7132 -5.1990 3.3467 13 8 -0.4070 -6.2446 2.5352 14 7 -0.4720 -4.2237 3.9501 15 6 0.2242 -3.3019 4.8513 16 6 -1.9283 -4.3635 4.0273 17 1 -2.2636 -5.0884 3.2856 18 6 -2.3208 -4.8461 5.4252 19 6 -2.5760 -3.0302 3.7559 20 1 -1.9652 -2.1477 3.6350 21 6 -3.9484 -2.9368 3.6620 22 7 -4.5338 -1.7612 3.7309 23 14 -4.9769 -4.4810 3.4445 24 1 -5.1512 -4.7598 1.9964 25 1 -4.2898 -5.6283 4.0903 26 1 -6.3071 -4.2825 4.0740 27 1 -0.3634 0.0044 1.0276 28 1 -0.3635 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5100 30 1 1.6889 2.1424 -0.0004 31 1 4.1734 2.0594 -0.0097 32 1 5.3046 -0.1284 -0.0085 33 1 2.0418 -3.2571 -0.5060 34 1 0.4997 -2.3680 -0.5013 35 1 0.6171 -2.1773 1.9681 36 1 2.1592 -3.0662 1.9635 37 1 0.0403 -4.5195 0.6481 38 1 0.5059 -3.8286 5.7631 39 1 1.1197 -2.9210 4.3604 40 1 -0.4350 -2.4705 5.1008 41 1 -3.4068 -4.8442 5.5185 42 1 -1.9445 -5.8573 5.5795 43 1 -1.8908 -4.1802 6.1735 44 1 -4.0080 -0.9677 3.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364846690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:25 Heat of formation + Delta-G solvation = -71.165962 kcal Electronic energy + Delta-G solvation = -26759.246537 eV Core-core repulsion = 23030.229775 eV Total energy + Delta-G solvation = -3729.016762 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35106 -38.44116 -38.07720 -37.14025 -36.97783 -34.61790 -34.58089 -33.67190 -31.61897 -30.02502 -28.05187 -27.27968 -26.59614 -24.99517 -23.34128 -22.53599 -22.25333 -20.41113 -19.49528 -18.84288 -18.49004 -17.77337 -17.54475 -17.16099 -16.57066 -15.84095 -15.77381 -15.55850 -15.35469 -15.10902 -14.94422 -14.65287 -14.28915 -14.00447 -13.93209 -13.72464 -13.61014 -13.56528 -13.47803 -13.33606 -13.25280 -13.24971 -13.03753 -12.83485 -12.55396 -12.45392 -12.21831 -12.05453 -11.90442 -11.41192 -11.10000 -10.66837 -10.58630 -10.43359 -10.38674 -9.85773 -9.72829 -8.61701 -6.28581 -0.39123 0.13732 0.33895 1.54363 1.55323 1.73251 1.89816 2.51787 2.52753 2.79057 3.12453 3.29002 3.41205 3.71850 3.84877 3.92573 3.94439 3.97869 4.12264 4.20246 4.38418 4.45828 4.53800 4.58768 4.62053 4.69803 4.73936 4.77408 4.80984 4.83558 4.88125 4.91406 5.01967 5.06138 5.22069 5.26729 5.29306 5.37023 5.53325 5.71793 5.80683 5.99403 6.09520 6.15376 6.70781 7.04411 7.44989 8.73063 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.004300 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.695197 B = 6509.600997 C = 7727.589557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 C -0.083 4.083 4 C -0.165 4.165 5 C 0.079 3.921 6 N -0.506 5.506 7 C 0.109 3.891 8 C -0.074 4.074 9 C 0.134 3.866 10 N -1.117 6.117 11 S 2.798 3.202 12 O -1.006 7.006 13 O -1.008 7.008 14 N -0.991 5.991 15 C 0.102 3.898 16 C 0.243 3.757 17 H 0.044 0.956 18 C -0.154 4.154 19 C -0.591 4.591 20 H 0.044 0.956 21 C -0.004 4.004 22 N -0.934 5.934 23 Si 1.056 2.944 24 H -0.275 1.275 25 H -0.243 1.243 26 H -0.285 1.285 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.424 0.576 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.517 5.046 -7.604 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.138 4.138 3 C -0.109 4.109 4 C -0.185 4.185 5 C -0.078 4.078 6 N -0.215 5.215 7 C -0.029 4.029 8 C -0.113 4.113 9 C 0.007 3.993 10 N -0.879 5.879 11 S 2.807 3.193 12 O -0.989 6.989 13 O -0.992 6.992 14 N -0.833 5.833 15 C -0.044 4.044 16 C 0.137 3.863 17 H 0.062 0.938 18 C -0.214 4.214 19 C -0.631 4.631 20 H 0.062 0.938 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.878 3.122 24 H -0.201 1.201 25 H -0.167 1.167 26 H -0.211 1.211 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.174 0.826 31 H 0.184 0.816 32 H 0.195 0.805 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.915 2.900 -7.508 15.218 hybrid contribution 0.657 2.014 -0.046 2.119 sum 13.573 4.914 -7.554 16.292 Atomic orbital electron populations 1.20859 0.89607 1.04126 1.02741 1.20937 0.98079 0.93874 1.00886 1.21878 0.94799 0.98500 0.95716 1.22491 0.95210 1.00389 1.00375 1.23227 1.01436 0.87645 0.95513 1.67475 1.08045 1.33187 1.12793 1.20955 0.89847 0.94744 0.97328 1.20700 1.00948 0.93663 0.96027 1.21076 0.95477 0.84322 0.98381 1.55661 1.68217 1.35341 1.28725 1.01206 0.72310 0.72926 0.72907 1.93538 1.38398 1.86749 1.80212 1.93543 1.71234 1.49603 1.84805 1.57460 1.17113 1.58696 1.49982 1.21352 0.95720 0.93663 0.93634 1.18882 0.76033 0.96415 0.94942 0.93850 1.22381 1.00992 0.99376 0.98609 1.22290 0.93289 0.94176 1.53297 0.93762 1.26629 0.97207 1.03747 0.92879 1.70926 1.39125 0.99802 1.47147 0.83991 0.75480 0.74356 0.78344 1.20078 1.16728 1.21142 0.91707 0.89754 0.90592 0.82570 0.81597 0.80500 0.88988 0.87788 0.92061 0.91281 0.74040 0.92209 0.91442 0.91204 0.92639 0.93649 0.92479 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.62 71.23 0.69 -1.76 16 2 C -0.14 -2.97 5.90 -19.77 -0.12 -3.09 16 3 C -0.08 -1.46 9.86 22.47 0.22 -1.24 16 4 C -0.17 -2.56 10.11 22.36 0.23 -2.33 16 5 C 0.08 1.50 11.18 84.69 0.95 2.45 16 6 N -0.51 -12.81 10.27 -183.89 -1.89 -14.69 16 7 C 0.11 2.69 6.03 42.54 0.26 2.95 16 8 C -0.07 -1.76 5.25 29.84 0.16 -1.60 16 9 C 0.13 3.78 6.23 86.38 0.54 4.31 16 10 N -1.12 -33.79 6.05 -187.51 -1.14 -34.93 16 11 S 2.80 104.09 6.09 -56.49 -0.34 103.74 16 12 O -1.01 -39.84 16.68 -128.00 -2.14 -41.98 16 13 O -1.01 -42.47 16.70 -128.00 -2.14 -44.61 16 14 N -0.99 -38.68 3.12 -520.43 -1.62 -40.30 16 15 C 0.10 3.49 9.16 127.77 1.17 4.66 16 16 C 0.24 10.80 2.17 44.24 0.10 10.89 16 17 H 0.04 2.01 5.54 -2.39 -0.01 2.00 16 18 C -0.15 -6.34 8.57 71.98 0.62 -5.72 16 19 C -0.59 -29.82 8.37 25.60 0.21 -29.61 16 20 H 0.04 2.38 7.38 -2.91 -0.02 2.36 16 21 C 0.00 -0.23 5.33 84.65 0.45 0.22 16 22 N -0.93 -53.91 13.70 21.44 0.29 -53.61 16 23 Si 1.06 47.25 26.17 68.60 1.80 49.05 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.24 -9.92 5.53 99.48 0.55 -9.37 16 26 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.08 1.57 5.95 -2.39 -0.01 1.55 16 30 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.10 2.16 5.93 -2.39 -0.01 2.15 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.05 7.75 -2.38 -0.02 2.03 16 37 H 0.42 10.96 8.65 -96.74 -0.84 10.12 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.05 7.79 -2.39 -0.02 2.04 16 40 H 0.07 2.54 6.92 -2.39 -0.02 2.52 16 41 H 0.05 2.30 5.06 -2.39 -0.01 2.29 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 2.22 7.47 -2.38 -0.02 2.20 16 44 H 0.26 14.90 8.73 -92.71 -0.81 14.09 16 Total: -1.00 -68.80 366.48 -1.73 -70.53 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -0.02 Total: 26.66 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 5.46 Total: -19.86 kcal Atomic # 7 Polarization: -139.18 SS G_CDS: -4.35 Total: -143.54 kcal Atomic # 8 Polarization: -82.31 SS G_CDS: -4.27 Total: -86.59 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.80 Total: 49.05 kcal Atomic # 16 Polarization: 104.09 SS G_CDS: -0.34 Total: 103.74 kcal Total: -68.80 -1.73 -70.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364846690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.633 kcal (2) G-P(sol) polarization free energy of solvation -68.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds