Wall clock time and date at job start Tue Mar 31 2020 15:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35314 * 126.12802 * 2 1 4 4 C 1.50694 * 126.04218 * 0.02562 * 3 2 1 5 5 N 1.46498 * 109.47340 * 184.79771 * 4 3 2 6 6 C 1.46502 * 119.99898 * 274.77709 * 5 4 3 7 7 S 1.65604 * 120.00117 * 94.77509 * 5 4 3 8 8 O 1.42096 * 104.27598 * 333.92985 * 7 5 4 9 9 O 1.42104 * 104.27607 * 206.07297 * 7 5 4 10 10 C 1.81393 * 104.45048 * 89.99903 * 7 5 4 11 11 C 1.52999 * 109.47388 * 186.14996 * 10 7 5 12 12 C 1.50700 * 115.55225 * 298.78964 * 11 10 7 13 13 H 1.07996 * 120.00131 * 95.15216 * 12 11 10 14 14 C 1.37884 * 120.00139 * 275.15597 * 12 11 10 15 15 N 1.31520 * 119.99513 * 7.33370 * 14 12 11 16 16 Si 1.86796 * 120.00051 * 187.33539 * 14 12 11 17 17 H 1.48496 * 109.46784 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47080 * 299.99813 * 16 14 12 19 19 H 1.48498 * 109.47364 * 59.99855 * 16 14 12 20 20 C 1.52999 * 117.49692 * 84.45405 * 11 10 7 21 21 C 1.52998 * 117.50098 * 153.11786 * 11 10 7 22 22 C 1.39873 * 107.91616 * 180.28849 * 3 2 1 23 23 N 1.30839 * 108.20424 * 359.55489 * 22 3 2 24 24 N 1.34950 * 126.12431 * 180.02562 * 2 1 3 25 25 C 1.46503 * 126.03927 * 359.94966 * 24 2 1 26 26 H 1.09001 * 109.47258 * 95.13326 * 1 2 3 27 27 H 1.08997 * 109.47014 * 215.13937 * 1 2 3 28 28 H 1.09000 * 109.46620 * 335.13399 * 1 2 3 29 29 H 1.09000 * 109.47252 * 64.79713 * 4 3 2 30 30 H 1.09005 * 109.47074 * 304.79456 * 4 3 2 31 31 H 1.08995 * 109.46677 * 274.15131 * 6 5 4 32 32 H 1.08999 * 109.46881 * 34.15554 * 6 5 4 33 33 H 1.09003 * 109.46966 * 154.15524 * 6 5 4 34 34 H 1.09004 * 109.46920 * 66.15418 * 10 7 5 35 35 H 1.08996 * 109.47688 * 306.15345 * 10 7 5 36 36 H 0.96992 * 120.00143 * 355.49758 * 15 14 12 37 37 H 1.09000 * 117.50459 * 215.00444 * 20 11 10 38 38 H 1.08998 * 117.50136 * 0.02877 * 20 11 10 39 39 H 1.09001 * 117.49752 * 359.97237 * 21 11 10 40 40 H 1.08991 * 117.50324 * 144.97956 * 21 11 10 41 41 H 1.08005 * 125.89429 * 179.73786 * 22 3 2 42 42 H 1.09000 * 109.47019 * 90.00250 * 25 24 2 43 43 H 1.08998 * 109.47455 * 210.00821 * 25 24 2 44 44 H 1.09003 * 109.46890 * 330.00855 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5275 0.0005 5 7 3.0040 3.4139 -0.1152 6 6 3.7494 3.8050 1.0839 7 16 3.4736 3.9737 -1.6013 8 8 3.0045 2.9881 -2.5112 9 8 4.8629 4.2336 -1.4549 10 6 2.5547 5.5233 -1.8123 11 6 2.7874 6.0662 -3.2237 12 6 4.2171 6.3986 -3.5648 13 1 4.8326 5.6737 -4.0768 14 6 4.7395 7.6281 -3.2233 15 7 4.0411 8.4544 -2.4755 16 14 6.4389 8.1200 -3.8226 17 1 6.7660 9.4793 -3.3221 18 1 7.4426 7.1503 -3.3151 19 1 6.4589 8.1217 -5.3074 20 6 1.9022 5.5196 -4.3456 21 6 1.6932 6.9462 -3.8314 22 6 3.6335 0.6558 -0.0067 23 7 3.6333 -0.6526 -0.0009 24 7 2.3026 -1.0900 -0.0005 25 6 1.8538 -2.4847 -0.0001 26 1 -0.3634 -0.0919 -1.0235 27 1 -0.3633 -0.8404 0.5915 28 1 -0.3632 0.9324 0.4321 29 1 1.3159 2.7392 0.9306 30 1 1.1736 2.6940 -0.8431 31 1 3.2770 4.6765 1.5371 32 1 3.7500 2.9802 1.7965 33 1 4.7758 4.0494 0.8100 34 1 2.9008 6.2535 -1.0806 35 1 1.4908 5.3379 -1.6652 36 1 3.1338 8.2271 -2.2186 37 1 2.3540 5.4003 -5.3304 38 1 1.1539 4.7736 -4.0781 39 1 0.8074 7.1381 -3.2259 40 1 2.0075 7.7657 -4.4776 41 1 4.5084 1.2890 -0.0124 42 1 1.7419 -2.8306 -1.0276 43 1 2.5900 -3.1031 0.5134 44 1 0.8956 -2.5578 0.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365704177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:27 Heat of formation + Delta-G solvation = 32.227761 kcal Electronic energy + Delta-G solvation = -26974.733174 eV Core-core repulsion = 23250.199900 eV Total energy + Delta-G solvation = -3724.533274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.29535 -37.05965 -36.38181 -36.23629 -35.02636 -33.37312 -32.34514 -31.96287 -28.67554 -28.27868 -26.77694 -26.11441 -24.95925 -23.98802 -21.39491 -20.86298 -19.75232 -19.53442 -18.25027 -17.10741 -16.84355 -16.52032 -15.77987 -15.54489 -15.40207 -14.49151 -14.34521 -14.05852 -13.92734 -13.70347 -13.49674 -13.35866 -13.17335 -12.93196 -12.76165 -12.53890 -12.44309 -12.35598 -12.19261 -11.99068 -11.83915 -11.24582 -11.13107 -11.01956 -10.97767 -10.75255 -10.61822 -10.58753 -10.32461 -10.06140 -9.68941 -9.23560 -8.94013 -8.64284 -8.46393 -8.27988 -8.21687 -6.44306 -4.22610 1.00644 1.83949 2.48864 2.84607 3.32887 3.46990 3.51406 3.68033 4.40288 4.50693 4.54847 4.60523 4.82543 4.88068 4.91758 4.98947 5.01015 5.09633 5.18838 5.23251 5.28657 5.39239 5.46405 5.49442 5.58463 5.60607 5.72423 5.82419 5.95523 6.02315 6.03476 6.07257 6.17902 6.28829 6.36886 6.54767 6.68577 6.75711 6.85157 7.01909 7.04679 7.18460 7.74095 8.05599 8.35554 8.78624 9.56375 10.95746 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.003739 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.362616 B = 7487.721284 C = 7908.156156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.082 3.918 3 C -0.244 4.244 4 C 0.208 3.792 5 N -1.011 6.011 6 C 0.082 3.918 7 S 2.614 3.386 8 O -0.961 6.961 9 O -0.943 6.943 10 C -0.569 4.569 11 C 0.022 3.978 12 C -0.592 4.592 13 H 0.061 0.939 14 C 0.040 3.960 15 N -0.897 5.897 16 Si 1.062 2.938 17 H -0.281 1.281 18 H -0.280 1.280 19 H -0.285 1.285 20 C -0.191 4.191 21 C -0.165 4.165 22 C 0.071 3.929 23 N -0.300 5.300 24 N -0.378 5.378 25 C 0.103 3.897 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.274 0.726 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.178 0.822 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -15.084 9.068 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.046 4.046 3 C -0.257 4.257 4 C 0.081 3.919 5 N -0.847 5.847 6 C -0.063 4.063 7 S 2.710 3.290 8 O -0.951 6.951 9 O -0.933 6.933 10 C -0.701 4.701 11 C 0.020 3.980 12 C -0.629 4.629 13 H 0.080 0.920 14 C -0.167 4.167 15 N -0.531 5.531 16 Si 0.889 3.111 17 H -0.206 1.206 18 H -0.206 1.206 19 H -0.212 1.212 20 C -0.228 4.228 21 C -0.204 4.204 22 C -0.115 4.115 23 N -0.121 5.121 24 N -0.161 5.161 25 C -0.038 4.038 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.195 0.805 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.387 -15.543 8.660 19.265 hybrid contribution -2.184 -0.058 0.193 2.193 sum -9.571 -15.601 8.853 20.332 Atomic orbital electron populations 1.20459 0.87374 1.03785 1.03352 1.20689 0.94329 0.86950 1.02600 1.20271 0.92969 0.95798 1.16620 1.19282 0.86719 0.83744 1.02155 1.57796 1.41364 1.60704 1.24833 1.21561 0.97309 1.00106 0.87332 1.05067 0.75541 0.76353 0.72044 1.93514 1.82802 1.56927 1.61899 1.93531 1.29314 1.86285 1.84194 1.30170 1.11055 1.20542 1.08357 1.18551 0.93735 1.00274 0.85438 1.21384 0.94035 1.03658 1.43820 0.92040 1.25811 1.05112 0.92805 0.92965 1.70770 1.11833 1.39680 1.30790 0.83651 0.74779 0.76479 0.76194 1.20633 1.20598 1.21169 1.23044 1.03408 0.96264 1.00082 1.22793 0.99739 0.93605 1.04284 1.23626 0.97802 0.91616 0.98504 1.77359 0.96282 1.13023 1.25421 1.48367 1.04018 1.05725 1.58005 1.21774 1.00703 0.78144 1.03218 0.90025 0.91246 0.89569 0.90192 0.89903 0.92922 0.91309 0.89468 0.85732 0.88311 0.91434 0.89309 0.90640 0.91218 0.89311 0.80527 0.90907 0.89479 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.89 36.01 0.36 -0.33 16 2 C 0.08 1.00 6.93 -82.26 -0.57 0.43 16 3 C -0.24 -3.51 6.05 -105.06 -0.64 -4.15 16 4 C 0.21 2.73 5.22 -5.20 -0.03 2.70 16 5 N -1.01 -15.67 2.42 -123.05 -0.30 -15.96 16 6 C 0.08 1.09 10.31 59.85 0.62 1.71 16 7 S 2.61 54.15 5.03 -107.50 -0.54 53.61 16 8 O -0.96 -21.61 16.99 -57.54 -0.98 -22.59 16 9 O -0.94 -22.88 16.06 -57.54 -0.92 -23.80 16 10 C -0.57 -11.91 5.97 37.16 0.22 -11.69 16 11 C 0.02 0.55 0.94 -155.66 -0.15 0.40 16 12 C -0.59 -16.54 7.94 -34.44 -0.27 -16.82 16 13 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 14 C 0.04 1.13 5.38 -17.81 -0.10 1.04 16 15 N -0.90 -25.83 13.57 55.43 0.75 -25.08 16 16 Si 1.06 25.43 29.91 -169.99 -5.08 20.35 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.19 -4.19 9.95 -26.69 -0.27 -4.45 16 21 C -0.17 -3.70 8.75 -26.69 -0.23 -3.93 16 22 C 0.07 1.15 11.19 -17.36 -0.19 0.95 16 23 N -0.30 -4.83 12.58 30.63 0.39 -4.45 16 24 N -0.38 -4.85 4.01 -63.88 -0.26 -5.10 16 25 C 0.10 0.79 11.27 59.85 0.67 1.47 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.37 7.25 -51.93 -0.38 -0.01 16 28 H 0.09 0.54 7.76 -51.93 -0.40 0.14 16 29 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.08 1.06 7.62 -51.93 -0.40 0.66 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.33 16 33 H 0.09 1.28 6.83 -51.93 -0.35 0.93 16 34 H 0.12 2.68 7.79 -51.92 -0.40 2.27 16 35 H 0.10 1.70 8.11 -51.93 -0.42 1.28 16 36 H 0.27 7.69 6.18 -40.82 -0.25 7.44 16 37 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.18 2.85 7.64 -52.48 -0.40 2.45 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.40 7.15 -51.93 -0.37 0.03 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -36.81 377.17 -8.64 -45.45 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.81 Total: 4.57 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: -0.57 Total: -32.68 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.58 Total: -50.59 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.90 Total: -46.39 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.54 Total: 53.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.81 -8.64 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365704177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.680 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds