Wall clock time and date at job start Tue Mar 31 2020 15:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35314 * 126.12802 * 2 1 4 4 C 1.50694 * 126.04218 * 0.02562 * 3 2 1 5 5 N 1.46498 * 109.47340 * 184.79771 * 4 3 2 6 6 C 1.46502 * 119.99898 * 274.77709 * 5 4 3 7 7 S 1.65604 * 120.00117 * 94.77509 * 5 4 3 8 8 O 1.42096 * 104.27598 * 333.92985 * 7 5 4 9 9 O 1.42104 * 104.27607 * 206.07297 * 7 5 4 10 10 C 1.81393 * 104.45048 * 89.99903 * 7 5 4 11 11 C 1.52999 * 109.47388 * 186.14996 * 10 7 5 12 12 C 1.50700 * 115.55225 * 298.78964 * 11 10 7 13 13 H 1.07996 * 120.00131 * 95.15216 * 12 11 10 14 14 C 1.37884 * 120.00139 * 275.15597 * 12 11 10 15 15 N 1.31520 * 119.99513 * 7.33370 * 14 12 11 16 16 Si 1.86796 * 120.00051 * 187.33539 * 14 12 11 17 17 H 1.48496 * 109.46784 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.47080 * 299.99813 * 16 14 12 19 19 H 1.48498 * 109.47364 * 59.99855 * 16 14 12 20 20 C 1.52999 * 117.49692 * 84.45405 * 11 10 7 21 21 C 1.52998 * 117.50098 * 153.11786 * 11 10 7 22 22 C 1.39873 * 107.91616 * 180.28849 * 3 2 1 23 23 N 1.30839 * 108.20424 * 359.55489 * 22 3 2 24 24 N 1.34950 * 126.12431 * 180.02562 * 2 1 3 25 25 C 1.46503 * 126.03927 * 359.94966 * 24 2 1 26 26 H 1.09001 * 109.47258 * 95.13326 * 1 2 3 27 27 H 1.08997 * 109.47014 * 215.13937 * 1 2 3 28 28 H 1.09000 * 109.46620 * 335.13399 * 1 2 3 29 29 H 1.09000 * 109.47252 * 64.79713 * 4 3 2 30 30 H 1.09005 * 109.47074 * 304.79456 * 4 3 2 31 31 H 1.08995 * 109.46677 * 274.15131 * 6 5 4 32 32 H 1.08999 * 109.46881 * 34.15554 * 6 5 4 33 33 H 1.09003 * 109.46966 * 154.15524 * 6 5 4 34 34 H 1.09004 * 109.46920 * 66.15418 * 10 7 5 35 35 H 1.08996 * 109.47688 * 306.15345 * 10 7 5 36 36 H 0.96992 * 120.00143 * 355.49758 * 15 14 12 37 37 H 1.09000 * 117.50459 * 215.00444 * 20 11 10 38 38 H 1.08998 * 117.50136 * 0.02877 * 20 11 10 39 39 H 1.09001 * 117.49752 * 359.97237 * 21 11 10 40 40 H 1.08991 * 117.50324 * 144.97956 * 21 11 10 41 41 H 1.08005 * 125.89429 * 179.73786 * 22 3 2 42 42 H 1.09000 * 109.47019 * 90.00250 * 25 24 2 43 43 H 1.08998 * 109.47455 * 210.00821 * 25 24 2 44 44 H 1.09003 * 109.46890 * 330.00855 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5275 0.0005 5 7 3.0040 3.4139 -0.1152 6 6 3.7494 3.8050 1.0839 7 16 3.4736 3.9737 -1.6013 8 8 3.0045 2.9881 -2.5112 9 8 4.8629 4.2336 -1.4549 10 6 2.5547 5.5233 -1.8123 11 6 2.7874 6.0662 -3.2237 12 6 4.2171 6.3986 -3.5648 13 1 4.8326 5.6737 -4.0768 14 6 4.7395 7.6281 -3.2233 15 7 4.0411 8.4544 -2.4755 16 14 6.4389 8.1200 -3.8226 17 1 6.7660 9.4793 -3.3221 18 1 7.4426 7.1503 -3.3151 19 1 6.4589 8.1217 -5.3074 20 6 1.9022 5.5196 -4.3456 21 6 1.6932 6.9462 -3.8314 22 6 3.6335 0.6558 -0.0067 23 7 3.6333 -0.6526 -0.0009 24 7 2.3026 -1.0900 -0.0005 25 6 1.8538 -2.4847 -0.0001 26 1 -0.3634 -0.0919 -1.0235 27 1 -0.3633 -0.8404 0.5915 28 1 -0.3632 0.9324 0.4321 29 1 1.3159 2.7392 0.9306 30 1 1.1736 2.6940 -0.8431 31 1 3.2770 4.6765 1.5371 32 1 3.7500 2.9802 1.7965 33 1 4.7758 4.0494 0.8100 34 1 2.9008 6.2535 -1.0806 35 1 1.4908 5.3379 -1.6652 36 1 3.1338 8.2271 -2.2186 37 1 2.3540 5.4003 -5.3304 38 1 1.1539 4.7736 -4.0781 39 1 0.8074 7.1381 -3.2259 40 1 2.0075 7.7657 -4.4776 41 1 4.5084 1.2890 -0.0124 42 1 1.7419 -2.8306 -1.0276 43 1 2.5900 -3.1031 0.5134 44 1 0.8956 -2.5578 0.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365704177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:26 Heat of formation + Delta-G solvation = 6.537953 kcal Electronic energy + Delta-G solvation = -26975.847167 eV Core-core repulsion = 23250.199900 eV Total energy + Delta-G solvation = -3725.647267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27225 -38.88611 -38.02792 -37.46644 -36.72529 -34.26294 -34.04645 -33.22231 -29.97185 -29.53903 -27.53511 -27.22850 -26.94297 -25.11269 -23.15236 -21.98376 -21.57524 -20.47269 -19.73978 -18.78245 -18.52740 -17.58058 -17.14787 -16.81692 -16.58436 -15.94608 -15.64954 -15.49055 -15.32378 -15.18372 -14.98724 -14.55316 -14.25087 -14.13923 -13.79100 -13.67311 -13.56609 -13.39449 -13.21205 -13.16165 -13.09055 -12.92313 -12.85608 -12.68273 -12.53434 -12.38929 -12.31502 -12.08135 -11.93610 -11.63067 -11.48035 -10.59444 -10.53280 -10.35250 -10.20087 -9.89839 -9.19524 -8.62268 -6.39685 -0.58328 0.88735 1.51582 1.58489 1.67585 1.75813 1.77861 1.93328 2.53687 2.97330 3.12461 3.18717 3.34917 3.60315 3.73239 3.81541 3.98721 4.12481 4.20760 4.36249 4.36524 4.39025 4.40137 4.43888 4.49373 4.58341 4.63196 4.65067 4.74065 4.80676 4.82481 4.94361 4.99040 5.01974 5.12511 5.13271 5.20372 5.26158 5.42215 5.60706 5.72292 6.01512 6.15618 6.19858 6.65031 6.70371 7.42492 8.80025 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.003739 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.362616 B = 7487.721284 C = 7908.156156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.092 3.908 3 C -0.271 4.271 4 C 0.203 3.797 5 N -1.001 6.001 6 C 0.078 3.922 7 S 2.623 3.377 8 O -0.985 6.985 9 O -0.993 6.993 10 C -0.563 4.563 11 C -0.015 4.015 12 C -0.607 4.607 13 H 0.036 0.964 14 C 0.000 4.000 15 N -0.915 5.915 16 Si 1.090 2.910 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.181 4.181 21 C -0.156 4.156 22 C 0.043 3.957 23 N -0.340 5.340 24 N -0.378 5.378 25 C 0.091 3.909 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.141 0.859 36 H 0.272 0.728 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.160 0.840 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 -16.118 10.260 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.284 4.284 4 C 0.077 3.923 5 N -0.839 5.839 6 C -0.067 4.067 7 S 2.720 3.280 8 O -0.975 6.975 9 O -0.983 6.983 10 C -0.695 4.695 11 C -0.017 4.017 12 C -0.644 4.644 13 H 0.054 0.946 14 C -0.203 4.203 15 N -0.550 5.550 16 Si 0.913 3.087 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.218 4.218 21 C -0.195 4.195 22 C -0.141 4.141 23 N -0.162 5.162 24 N -0.161 5.161 25 C -0.049 4.049 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.178 0.822 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.545 -16.595 9.836 21.985 hybrid contribution -1.274 0.102 -0.154 1.287 sum -11.819 -16.493 9.682 22.482 Atomic orbital electron populations 1.20685 0.83629 1.06069 1.04555 1.21408 0.96392 0.85944 0.99988 1.20511 0.92422 0.97177 1.18293 1.19651 0.85686 0.82502 1.04463 1.57325 1.42422 1.60677 1.23451 1.21747 0.96127 1.02092 0.86756 1.04444 0.74562 0.76083 0.72929 1.93467 1.82858 1.57478 1.63712 1.93465 1.32602 1.86890 1.85309 1.30028 1.13743 1.19974 1.05798 1.18655 0.92515 1.02707 0.87815 1.21577 0.96121 1.03183 1.43501 0.94609 1.26813 1.07547 0.93093 0.92879 1.70839 1.12105 1.40069 1.31991 0.83292 0.71966 0.76484 0.76942 1.19753 1.20763 1.19376 1.23111 1.02992 0.96795 0.98899 1.22766 0.99826 0.93056 1.03811 1.23580 0.98535 0.91981 1.00040 1.77247 0.98881 1.13122 1.26947 1.48789 1.03024 1.07660 1.56649 1.22199 1.02467 0.75751 1.04444 0.89241 0.88428 0.87810 0.86053 0.89330 0.90477 0.88881 0.91840 0.86592 0.84106 0.91719 0.90226 0.87717 0.88182 0.91400 0.82230 0.90048 0.89187 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.89 71.24 0.70 -0.25 16 2 C 0.09 2.00 6.93 41.40 0.29 2.28 16 3 C -0.27 -7.39 6.05 -20.15 -0.12 -7.52 16 4 C 0.20 4.76 5.22 85.63 0.45 5.21 16 5 N -1.00 -29.86 2.42 -543.23 -1.31 -31.17 16 6 C 0.08 1.98 10.31 127.77 1.32 3.30 16 7 S 2.62 109.15 5.03 -56.49 -0.28 108.87 16 8 O -0.98 -44.38 16.99 -127.65 -2.17 -46.55 16 9 O -0.99 -50.32 16.06 -127.65 -2.05 -52.37 16 10 C -0.56 -22.90 5.97 71.98 0.43 -22.47 16 11 C -0.01 -0.71 0.94 -52.93 -0.05 -0.76 16 12 C -0.61 -34.68 7.94 25.60 0.20 -34.48 16 13 H 0.04 2.16 7.82 -2.91 -0.02 2.14 16 14 C 0.00 -0.03 5.38 84.66 0.46 0.43 16 15 N -0.92 -53.07 13.57 21.45 0.29 -52.78 16 16 Si 1.09 52.00 29.91 68.60 2.05 54.05 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 C -0.18 -7.70 9.95 30.62 0.30 -7.39 16 21 C -0.16 -6.75 8.75 30.62 0.27 -6.49 16 22 C 0.04 1.43 11.19 85.24 0.95 2.39 16 23 N -0.34 -11.05 12.58 -57.02 -0.72 -11.77 16 24 N -0.38 -9.04 4.01 -356.02 -1.43 -10.46 16 25 C 0.09 1.16 11.27 127.77 1.44 2.60 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.50 7.25 -2.39 -0.02 0.48 16 28 H 0.10 0.76 7.76 -2.39 -0.02 0.74 16 29 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 30 H 0.09 1.97 7.62 -2.38 -0.02 1.95 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 33 H 0.06 1.93 6.83 -2.39 -0.02 1.92 16 34 H 0.12 4.92 7.79 -2.39 -0.02 4.90 16 35 H 0.14 4.38 8.11 -2.39 -0.02 4.36 16 36 H 0.27 15.28 6.18 -92.71 -0.57 14.71 16 37 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.16 5.55 7.64 -2.91 -0.02 5.53 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.12 0.62 7.15 -2.39 -0.02 0.61 16 Total: -1.00 -83.68 377.17 2.20 -81.47 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.18 Total: 23.85 kcal Atomic # 6 Polarization: -69.78 SS G_CDS: 6.64 Total: -63.14 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.17 Total: -106.19 kcal Atomic # 8 Polarization: -94.70 SS G_CDS: -4.22 Total: -98.92 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 2.05 Total: 54.05 kcal Atomic # 16 Polarization: 109.15 SS G_CDS: -0.28 Total: 108.87 kcal Total: -83.68 2.20 -81.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365704177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.012 kcal (2) G-P(sol) polarization free energy of solvation -83.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds