Wall clock time and date at job start Tue Mar 31 2020 15:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32152 * 119.99915 * 2 1 4 4 C 1.32126 * 119.99797 * 180.27318 * 3 2 1 5 5 C 1.38386 * 119.99855 * 359.73745 * 4 3 2 6 6 N 1.32124 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47184 * 89.99945 * 8 7 6 10 10 N 1.46504 * 109.46883 * 179.97438 * 9 8 7 11 11 S 1.65598 * 119.99398 * 164.99895 * 10 9 8 12 12 O 1.42110 * 104.27225 * 181.06720 * 11 10 9 13 13 O 1.42095 * 104.28131 * 308.92220 * 11 10 9 14 14 C 1.81401 * 104.45377 * 64.99846 * 11 10 9 15 15 C 1.52994 * 109.47446 * 179.97438 * 14 11 10 16 16 C 1.53004 * 109.47099 * 299.99992 * 15 14 11 17 17 C 1.52999 * 109.47144 * 59.99803 * 15 14 11 18 18 C 1.50695 * 109.47159 * 180.02562 * 15 14 11 19 19 H 1.08004 * 120.00322 * 0.02562 * 18 15 14 20 20 C 1.37886 * 120.00045 * 179.97438 * 18 15 14 21 21 N 1.31511 * 119.99794 * 0.02562 * 20 18 15 22 22 Si 1.86794 * 120.00017 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47179 * 90.00013 * 22 20 18 24 24 H 1.48499 * 109.47453 * 210.00211 * 22 20 18 25 25 H 1.48505 * 109.47274 * 330.00193 * 22 20 18 26 26 H 1.08995 * 109.46906 * 270.24374 * 1 2 3 27 27 H 1.09001 * 109.46795 * 30.24272 * 1 2 3 28 28 H 1.08997 * 109.46833 * 150.24275 * 1 2 3 29 29 H 1.07998 * 119.99650 * 179.75688 * 4 3 2 30 30 H 1.08005 * 120.00212 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47612 * 330.00000 * 8 7 6 32 32 H 1.09001 * 109.47122 * 209.99831 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 34 34 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 35 35 H 0.96998 * 120.00163 * 344.99658 * 10 9 8 36 36 H 1.09002 * 109.47012 * 299.99833 * 14 11 10 37 37 H 1.09010 * 109.46686 * 59.99500 * 14 11 10 38 38 H 1.09000 * 109.46887 * 59.99799 * 16 15 14 39 39 H 1.09003 * 109.47266 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47309 * 299.99893 * 16 15 14 41 41 H 1.09002 * 109.46848 * 60.00093 * 17 15 14 42 42 H 1.09003 * 109.47061 * 180.02562 * 17 15 14 43 43 H 1.09000 * 109.47219 * 300.00431 * 17 15 14 44 44 H 0.96995 * 119.99916 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1982 0.0001 7 6 2.1987 -1.1981 0.0055 8 6 1.4452 -2.5031 0.0115 9 6 1.1961 -2.9417 1.4561 10 7 0.4631 -4.2101 1.4618 11 16 0.3762 -5.1097 2.8494 12 8 -0.3746 -6.2573 2.4765 13 8 1.7262 -5.2250 3.2776 14 6 -0.5708 -4.0760 4.0006 15 6 -0.7218 -4.8067 5.3363 16 6 -1.4587 -6.1290 5.1138 17 6 0.6629 -5.0872 5.9235 18 6 -1.5090 -3.9482 6.2924 19 1 -1.8664 -2.9785 5.9786 20 6 -1.7740 -4.4011 7.5675 21 7 -1.3393 -5.5821 7.9494 22 14 -2.7492 -3.3366 8.7528 23 1 -4.1966 -3.6379 8.6127 24 1 -2.3168 -3.6215 10.1446 25 1 -2.5096 -1.9040 8.4436 26 1 -0.3633 0.0044 1.0276 27 1 -0.3633 0.8878 -0.5176 28 1 -0.3633 -0.8921 -0.5101 29 1 4.0290 2.0798 -0.0094 30 1 5.2610 -0.0541 -0.0106 31 1 2.0321 -3.2640 -0.5031 32 1 0.4906 -2.3739 -0.4986 33 1 2.1507 -3.0710 1.9662 34 1 0.6093 -2.1809 1.9706 35 1 0.0287 -4.5229 0.6529 36 1 -0.0460 -3.1338 4.1588 37 1 -1.5575 -3.8766 3.5823 38 1 -0.8896 -6.7502 4.4221 39 1 -1.5658 -6.6499 6.0654 40 1 -2.4452 -5.9293 4.6955 41 1 1.1879 -4.1451 6.0820 42 1 0.5554 -5.6082 6.8749 43 1 1.2320 -5.7083 5.2318 44 1 -1.5254 -5.9005 8.8465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365710225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:29 Heat of formation + Delta-G solvation = -33.637261 kcal Electronic energy + Delta-G solvation = -26198.562407 eV Core-core repulsion = 22471.173012 eV Total energy + Delta-G solvation = -3727.389395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50972 -36.73235 -36.33922 -36.27170 -35.30017 -34.80206 -33.58977 -31.67747 -29.62664 -28.20315 -26.64605 -25.72120 -25.24680 -24.69744 -23.23587 -22.17225 -19.63598 -18.83885 -18.17269 -17.37499 -16.68512 -16.40956 -15.97607 -15.61327 -15.45687 -15.23990 -14.77633 -14.67855 -14.47838 -13.75233 -13.27302 -13.18244 -13.03759 -12.99451 -12.67825 -12.52407 -12.40490 -12.08609 -11.88015 -11.70069 -11.58573 -11.43612 -11.19670 -11.07701 -11.07427 -10.93659 -10.71319 -10.39405 -10.28292 -10.12400 -9.67248 -9.65191 -9.38993 -9.34413 -9.25737 -8.68499 -8.41131 -6.04466 -4.16540 0.43027 0.80546 0.88333 3.12831 3.24862 3.32315 3.34057 3.35725 3.72135 3.84112 4.13253 4.27702 4.36589 4.38081 4.66975 4.69923 4.79972 4.85296 4.99788 5.03562 5.20323 5.20943 5.33146 5.37153 5.44504 5.61241 5.68254 5.72578 5.76967 5.96369 6.10587 6.36212 6.69312 6.78976 6.89986 6.99912 7.00810 7.09607 7.30895 7.49737 7.49790 7.66829 7.97482 8.08660 8.31946 8.81899 9.48927 10.96874 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.003283 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.855670 B = 8525.835641 C = 9536.938015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.086 3.914 3 N -0.439 5.439 4 C 0.049 3.951 5 C 0.045 3.955 6 N -0.429 5.429 7 C 0.084 3.916 8 C -0.077 4.077 9 C 0.124 3.876 10 N -1.130 6.130 11 S 2.593 3.407 12 O -0.963 6.963 13 O -0.962 6.962 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 10.849 -17.190 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 N -0.154 5.154 4 C -0.111 4.111 5 C -0.115 4.115 6 N -0.143 5.143 7 C -0.058 4.058 8 C -0.117 4.117 9 C -0.004 4.004 10 N -0.887 5.887 11 S 2.691 3.309 12 O -0.954 6.954 13 O -0.952 6.952 14 C -0.715 4.715 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.221 4.221 18 C -0.542 4.542 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.187 0.813 30 H 0.188 0.812 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.245 0.755 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.328 9.924 -16.773 20.490 hybrid contribution -0.845 1.277 0.457 1.598 sum 5.482 11.200 -16.316 20.536 Atomic orbital electron populations 1.20859 0.87567 1.04124 1.04189 1.22158 0.98567 0.88920 0.95766 1.68317 1.09014 1.29100 1.08983 1.23784 0.90793 0.99955 0.96538 1.23787 1.02015 0.88660 0.97003 1.68298 1.08129 1.29987 1.07911 1.21894 0.90678 0.96070 0.97131 1.20765 1.00222 0.92809 0.97912 1.21128 0.97379 0.85297 0.96548 1.55846 1.68359 1.35207 1.29260 1.05636 0.75860 0.75304 0.74068 1.93559 1.73700 1.46465 1.81649 1.93546 1.34600 1.85708 1.81373 1.30524 1.12932 1.14045 1.14046 1.17927 0.94657 0.92664 0.86777 1.22279 0.98952 0.98003 1.02937 1.22275 0.95425 1.00374 1.04074 1.20939 1.34104 1.02578 0.96554 0.92325 1.24940 0.95668 0.95134 0.98000 1.69799 1.45390 1.17896 1.19040 0.86539 0.80197 0.80627 0.80281 1.20634 1.21127 1.19977 0.89294 0.90050 0.89667 0.81304 0.81222 0.88598 0.88598 0.89726 0.91624 0.75492 0.86572 0.86174 0.95352 0.88638 0.94442 0.94529 0.88655 0.95294 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.79 36.01 0.35 -0.44 16 2 C 0.09 0.85 6.78 -82.41 -0.56 0.29 16 3 N -0.44 -4.57 10.42 -9.29 -0.10 -4.67 16 4 C 0.05 0.41 11.23 -17.37 -0.19 0.21 16 5 C 0.05 0.39 11.23 -17.37 -0.20 0.19 16 6 N -0.43 -4.79 10.42 -9.29 -0.10 -4.89 16 7 C 0.08 0.87 6.04 -82.42 -0.50 0.37 16 8 C -0.08 -0.70 5.27 -27.88 -0.15 -0.84 16 9 C 0.12 1.40 6.11 -4.04 -0.02 1.38 16 10 N -1.13 -14.22 5.89 -10.61 -0.06 -14.29 16 11 S 2.59 46.72 4.49 -107.50 -0.48 46.24 16 12 O -0.96 -19.71 15.70 -57.54 -0.90 -20.61 16 13 O -0.96 -20.13 15.12 -57.54 -0.87 -21.00 16 14 C -0.58 -11.02 5.01 37.15 0.19 -10.84 16 15 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 16 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 17 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 18 C -0.50 -13.07 8.01 -34.44 -0.28 -13.34 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 21 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 22 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.45 5.95 -51.93 -0.31 0.15 16 29 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.60 5.94 -51.93 -0.31 0.29 16 33 H 0.08 1.12 7.70 -51.93 -0.40 0.72 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.41 4.11 8.62 -34.47 -0.30 3.81 16 36 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 37 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 38 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 39 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 43 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -34.29 361.50 -8.80 -43.08 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.28 Total: 5.66 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -0.95 Total: -26.97 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.26 Total: -47.35 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.77 Total: -41.61 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 46.72 SS G_CDS: -0.48 Total: 46.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.29 -8.80 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365710225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.446 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds