Wall clock time and date at job start Tue Mar 31 2020 15:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32152 * 119.99915 * 2 1 4 4 C 1.32126 * 119.99797 * 180.27318 * 3 2 1 5 5 C 1.38386 * 119.99855 * 359.73745 * 4 3 2 6 6 N 1.32124 * 119.99702 * 359.97438 * 5 4 3 7 7 C 1.32156 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99509 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47184 * 89.99945 * 8 7 6 10 10 N 1.46504 * 109.46883 * 179.97438 * 9 8 7 11 11 S 1.65598 * 119.99398 * 164.99895 * 10 9 8 12 12 O 1.42110 * 104.27225 * 181.06720 * 11 10 9 13 13 O 1.42095 * 104.28131 * 308.92220 * 11 10 9 14 14 C 1.81401 * 104.45377 * 64.99846 * 11 10 9 15 15 C 1.52994 * 109.47446 * 179.97438 * 14 11 10 16 16 C 1.53004 * 109.47099 * 299.99992 * 15 14 11 17 17 C 1.52999 * 109.47144 * 59.99803 * 15 14 11 18 18 C 1.50695 * 109.47159 * 180.02562 * 15 14 11 19 19 H 1.08004 * 120.00322 * 0.02562 * 18 15 14 20 20 C 1.37886 * 120.00045 * 179.97438 * 18 15 14 21 21 N 1.31511 * 119.99794 * 0.02562 * 20 18 15 22 22 Si 1.86794 * 120.00017 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47179 * 90.00013 * 22 20 18 24 24 H 1.48499 * 109.47453 * 210.00211 * 22 20 18 25 25 H 1.48505 * 109.47274 * 330.00193 * 22 20 18 26 26 H 1.08995 * 109.46906 * 270.24374 * 1 2 3 27 27 H 1.09001 * 109.46795 * 30.24272 * 1 2 3 28 28 H 1.08997 * 109.46833 * 150.24275 * 1 2 3 29 29 H 1.07998 * 119.99650 * 179.75688 * 4 3 2 30 30 H 1.08005 * 120.00212 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47612 * 330.00000 * 8 7 6 32 32 H 1.09001 * 109.47122 * 209.99831 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 34 34 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 35 35 H 0.96998 * 120.00163 * 344.99658 * 10 9 8 36 36 H 1.09002 * 109.47012 * 299.99833 * 14 11 10 37 37 H 1.09010 * 109.46686 * 59.99500 * 14 11 10 38 38 H 1.09000 * 109.46887 * 59.99799 * 16 15 14 39 39 H 1.09003 * 109.47266 * 179.97438 * 16 15 14 40 40 H 1.08997 * 109.47309 * 299.99893 * 16 15 14 41 41 H 1.09002 * 109.46848 * 60.00093 * 17 15 14 42 42 H 1.09003 * 109.47061 * 180.02562 * 17 15 14 43 43 H 1.09000 * 109.47219 * 300.00431 * 17 15 14 44 44 H 0.96995 * 119.99916 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0057 6 7 3.5202 -1.1982 0.0001 7 6 2.1987 -1.1981 0.0055 8 6 1.4452 -2.5031 0.0115 9 6 1.1961 -2.9417 1.4561 10 7 0.4631 -4.2101 1.4618 11 16 0.3762 -5.1097 2.8494 12 8 -0.3746 -6.2573 2.4765 13 8 1.7262 -5.2250 3.2776 14 6 -0.5708 -4.0760 4.0006 15 6 -0.7218 -4.8067 5.3363 16 6 -1.4587 -6.1290 5.1138 17 6 0.6629 -5.0872 5.9235 18 6 -1.5090 -3.9482 6.2924 19 1 -1.8664 -2.9785 5.9786 20 6 -1.7740 -4.4011 7.5675 21 7 -1.3393 -5.5821 7.9494 22 14 -2.7492 -3.3366 8.7528 23 1 -4.1966 -3.6379 8.6127 24 1 -2.3168 -3.6215 10.1446 25 1 -2.5096 -1.9040 8.4436 26 1 -0.3633 0.0044 1.0276 27 1 -0.3633 0.8878 -0.5176 28 1 -0.3633 -0.8921 -0.5101 29 1 4.0290 2.0798 -0.0094 30 1 5.2610 -0.0541 -0.0106 31 1 2.0321 -3.2640 -0.5031 32 1 0.4906 -2.3739 -0.4986 33 1 2.1507 -3.0710 1.9662 34 1 0.6093 -2.1809 1.9706 35 1 0.0287 -4.5229 0.6529 36 1 -0.0460 -3.1338 4.1588 37 1 -1.5575 -3.8766 3.5823 38 1 -0.8896 -6.7502 4.4221 39 1 -1.5658 -6.6499 6.0654 40 1 -2.4452 -5.9293 4.6955 41 1 1.1879 -4.1451 6.0820 42 1 0.5554 -5.6082 6.8749 43 1 1.2320 -5.7083 5.2318 44 1 -1.5254 -5.9005 8.8465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365710225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:28 Heat of formation + Delta-G solvation = -58.952176 kcal Electronic energy + Delta-G solvation = -26199.660144 eV Core-core repulsion = 22471.173012 eV Total energy + Delta-G solvation = -3728.487132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16713 -38.14520 -38.10882 -37.35680 -36.85710 -35.48026 -34.38233 -33.62153 -30.38791 -28.82460 -28.29229 -27.67861 -27.24039 -25.51386 -23.88663 -22.91407 -21.37272 -20.28163 -18.86020 -18.78521 -17.87828 -17.53168 -17.25130 -16.92928 -16.63234 -16.36656 -16.10885 -15.70258 -15.54434 -14.95560 -14.65412 -14.45384 -14.40820 -13.84370 -13.79653 -13.70424 -13.55599 -13.20231 -13.10132 -13.00169 -12.88058 -12.78236 -12.70034 -12.57395 -12.48449 -12.24972 -12.16172 -12.13314 -11.93549 -11.88938 -11.55292 -11.35888 -10.69228 -10.40839 -10.34280 -10.01373 -9.97590 -8.02178 -6.20701 -0.61238 -0.19362 0.15653 1.44559 1.46565 1.54840 1.89329 2.44836 2.68427 2.87161 3.11601 3.20310 3.23731 3.35694 3.50891 3.73145 3.89039 4.04924 4.05924 4.19573 4.25362 4.33664 4.46085 4.51660 4.61945 4.63386 4.76956 4.79913 4.87590 4.88682 4.99825 5.02089 5.04514 5.10461 5.21114 5.40191 5.51703 5.52339 5.65783 5.98674 6.12500 6.17143 6.35147 6.35514 6.84346 6.84446 7.47680 8.97685 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.003283 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.855670 B = 8525.835641 C = 9536.938015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.077 3.923 3 N -0.464 5.464 4 C 0.051 3.949 5 C 0.039 3.961 6 N -0.460 5.460 7 C 0.067 3.933 8 C -0.071 4.071 9 C 0.117 3.883 10 N -1.109 6.109 11 S 2.613 3.387 12 O -0.990 6.990 13 O -0.995 6.995 14 C -0.585 4.585 15 C 0.069 3.931 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.516 4.516 19 H 0.065 0.935 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.201 0.799 30 H 0.198 0.802 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.428 0.572 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 12.807 -18.619 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.063 4.063 3 N -0.180 5.180 4 C -0.109 4.109 5 C -0.121 4.121 6 N -0.175 5.175 7 C -0.074 4.074 8 C -0.110 4.110 9 C -0.010 4.010 10 N -0.871 5.871 11 S 2.710 3.290 12 O -0.980 6.980 13 O -0.984 6.984 14 C -0.718 4.718 15 C 0.067 3.933 16 C -0.219 4.219 17 C -0.218 4.218 18 C -0.555 4.555 19 H 0.083 0.917 20 C -0.183 4.183 21 N -0.547 5.547 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.218 0.782 30 H 0.215 0.785 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.829 11.876 -18.212 22.510 hybrid contribution -0.607 0.726 0.841 1.266 sum 5.222 12.602 -17.371 22.087 Atomic orbital electron populations 1.20969 0.85961 1.05265 1.04643 1.22520 0.99746 0.88641 0.95346 1.68375 1.10112 1.29581 1.09932 1.24333 0.90405 1.01212 0.94981 1.24292 1.03372 0.88198 0.96260 1.68285 1.08919 1.31467 1.08848 1.22040 0.90682 0.96626 0.98005 1.20750 1.01663 0.92255 0.96345 1.21302 0.96516 0.84716 0.98417 1.55265 1.68357 1.35421 1.28025 1.04715 0.74728 0.74954 0.74557 1.93516 1.74070 1.48237 1.82168 1.93506 1.36177 1.86275 1.82479 1.30448 1.14975 1.14438 1.11944 1.17918 0.93610 0.92643 0.89162 1.22215 0.99522 0.98470 1.01659 1.22208 0.96372 1.00193 1.03015 1.21310 1.34063 1.03013 0.97127 0.91703 1.25682 0.96702 0.96167 0.99700 1.69947 1.46380 1.19226 1.19176 0.85623 0.78867 0.79442 0.78080 1.20310 1.21453 1.19131 0.89015 0.89820 0.87683 0.78199 0.78533 0.88931 0.85520 0.91930 0.89685 0.73551 0.84703 0.83842 0.94888 0.91165 0.93866 0.94288 0.91160 0.94907 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.79 71.24 0.70 -0.63 16 2 C 0.08 1.38 6.78 42.54 0.29 1.67 16 3 N -0.46 -8.91 10.42 -183.30 -1.91 -10.82 16 4 C 0.05 0.74 11.23 84.68 0.95 1.69 16 5 C 0.04 0.60 11.23 84.68 0.95 1.55 16 6 N -0.46 -9.78 10.42 -183.30 -1.91 -11.69 16 7 C 0.07 1.29 6.04 42.53 0.26 1.55 16 8 C -0.07 -1.11 5.27 29.85 0.16 -0.95 16 9 C 0.12 2.41 6.11 86.38 0.53 2.94 16 10 N -1.11 -25.40 5.89 -187.48 -1.10 -26.50 16 11 S 2.61 90.89 4.49 -56.49 -0.25 90.63 16 12 O -0.99 -39.47 15.70 -127.65 -2.00 -41.48 16 13 O -0.99 -41.22 15.12 -127.65 -1.93 -43.15 16 14 C -0.59 -21.11 5.01 71.98 0.36 -20.75 16 15 C 0.07 3.26 0.52 -52.93 -0.03 3.23 16 16 C -0.16 -7.89 7.77 71.98 0.56 -7.33 16 17 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 18 C -0.52 -26.42 8.01 25.60 0.21 -26.22 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 20 C 0.02 0.88 5.15 84.66 0.44 1.32 16 21 N -0.91 -50.20 9.35 21.45 0.20 -50.00 16 22 Si 0.95 41.76 29.54 68.60 2.03 43.79 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.76 5.95 -2.39 -0.01 0.75 16 29 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.13 1.14 5.94 -2.39 -0.01 1.12 16 33 H 0.06 1.59 7.70 -2.39 -0.02 1.57 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.43 7.32 8.62 -96.75 -0.83 6.49 16 36 H 0.13 4.30 8.14 -2.39 -0.02 4.29 16 37 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 38 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 39 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 43 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 44 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -74.30 361.50 -0.77 -75.07 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.19 Total: 23.45 kcal Atomic # 6 Polarization: -55.23 SS G_CDS: 5.92 Total: -49.31 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -4.72 Total: -99.01 kcal Atomic # 8 Polarization: -80.69 SS G_CDS: -3.93 Total: -84.63 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 90.89 SS G_CDS: -0.25 Total: 90.63 kcal Total: -74.30 -0.77 -75.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365710225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.119 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds