Wall clock time and date at job start Tue Mar 31 2020 14:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38664 * 120.42087 * 2 1 4 4 C 1.38626 * 118.42292 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.15814 * 359.97438 * 4 3 2 6 6 N 1.31853 * 120.76544 * 359.72200 * 5 4 3 7 7 C 1.31878 * 121.72334 * 0.56925 * 6 5 4 8 8 C 1.50706 * 119.61960 * 179.70804 * 7 6 5 9 9 H 1.08997 * 109.47120 * 164.73104 * 8 7 6 10 10 C 1.53001 * 109.46967 * 284.72925 * 8 7 6 11 11 N 1.46501 * 109.46842 * 44.72379 * 8 7 6 12 12 S 1.65602 * 119.99659 * 145.00348 * 11 8 7 13 13 O 1.42099 * 106.40239 * 178.54322 * 12 11 8 14 14 O 1.42107 * 106.40175 * 311.46245 * 12 11 8 15 15 N 1.65594 * 107.22151 * 64.99946 * 12 11 8 16 16 C 1.46495 * 120.00207 * 270.00218 * 15 12 11 17 17 C 1.46498 * 119.99696 * 89.99863 * 15 12 11 18 18 H 1.08994 * 109.47278 * 359.97438 * 17 15 12 19 19 C 1.52999 * 109.46931 * 120.00328 * 17 15 12 20 20 C 1.50704 * 109.46973 * 240.00243 * 17 15 12 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 17 15 22 22 C 1.37887 * 119.99968 * 180.02562 * 20 17 15 23 23 N 1.31521 * 119.99683 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 120.00111 * 180.02562 * 22 20 17 25 25 H 1.48491 * 109.47179 * 89.99664 * 24 22 20 26 26 H 1.48495 * 109.46836 * 210.00238 * 24 22 20 27 27 H 1.48502 * 109.46980 * 329.99889 * 24 22 20 28 28 H 1.09001 * 109.47185 * 270.02531 * 1 2 3 29 29 H 1.09001 * 109.46984 * 30.02279 * 1 2 3 30 30 H 1.09001 * 109.47353 * 150.02332 * 1 2 3 31 31 H 1.07997 * 120.79107 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.42387 * 180.02562 * 4 3 2 33 33 H 1.08009 * 119.61685 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47019 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.46835 * 299.99675 * 10 8 7 36 36 H 1.09003 * 109.47265 * 59.99454 * 10 8 7 37 37 H 0.97000 * 120.00177 * 325.00463 * 11 8 7 38 38 H 1.09003 * 109.47140 * 89.99412 * 16 15 12 39 39 H 1.08998 * 109.47533 * 209.99428 * 16 15 12 40 40 H 1.09002 * 109.47178 * 330.00068 * 16 15 12 41 41 H 1.09000 * 109.47215 * 60.00139 * 19 17 15 42 42 H 1.09007 * 109.46946 * 179.97438 * 19 17 15 43 43 H 1.08991 * 109.47529 * 299.99547 * 19 17 15 44 44 H 0.96994 * 119.99674 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0076 7 6 2.2067 -1.1917 0.0016 8 6 1.4538 -2.4972 0.0023 9 1 0.4123 -2.3160 0.2676 10 6 1.5231 -3.1265 -1.3906 11 7 2.0557 -3.4075 0.9797 12 16 1.0987 -4.4524 1.8368 13 8 1.9718 -5.2108 2.6625 14 8 0.0202 -3.6812 2.3481 15 7 0.4399 -5.5159 0.7519 16 6 -0.8421 -5.2099 0.1124 17 6 1.1391 -6.7627 0.4315 18 1 2.0680 -6.8146 0.9994 19 6 0.2507 -7.9538 0.7959 20 6 1.4496 -6.8000 -1.0427 21 1 1.1557 -5.9771 -1.6775 22 6 2.1087 -7.8848 -1.5813 23 7 2.4669 -8.8867 -0.8082 24 14 2.4941 -7.9307 -3.4085 25 1 3.8247 -7.3172 -3.6493 26 1 2.5067 -9.3400 -3.8763 27 1 1.4570 -7.1715 -4.1523 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6891 2.1422 -0.0004 32 1 4.1736 2.0591 0.0010 33 1 5.3047 -0.1287 0.0025 34 1 0.9790 -4.0710 -1.3901 35 1 1.0753 -2.4493 -2.1179 36 1 2.5647 -3.3077 -1.6561 37 1 3.0147 -3.3981 1.1249 38 1 -0.6650 -4.6596 -0.8117 39 1 -1.3668 -6.1384 -0.1126 40 1 -1.4485 -4.6038 0.7856 41 1 -0.6780 -7.9017 0.2276 42 1 0.7708 -8.8815 0.5571 43 1 0.0262 -7.9269 1.8621 44 1 2.9303 -9.6500 -1.1871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365748138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:43 Heat of formation + Delta-G solvation = -41.900497 kcal Electronic energy + Delta-G solvation = -27425.430216 eV Core-core repulsion = 23697.682500 eV Total energy + Delta-G solvation = -3727.747716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55650 -36.74304 -36.30723 -35.84968 -35.21822 -33.76720 -32.57054 -31.65605 -29.25527 -28.94745 -27.38113 -25.54446 -25.15758 -24.39668 -22.33863 -21.15865 -20.72929 -18.86521 -17.52665 -17.12325 -16.68010 -16.37778 -16.23601 -15.46693 -15.19565 -14.71598 -14.47193 -14.15516 -13.74769 -13.53992 -13.35099 -13.24730 -13.07798 -12.80284 -12.72776 -12.57303 -12.01032 -11.91285 -11.84953 -11.70849 -11.48957 -11.36489 -11.25194 -11.12694 -10.97323 -10.83826 -10.77038 -10.41674 -10.22656 -9.98147 -9.85041 -9.59526 -9.25133 -9.10070 -8.84275 -8.44668 -7.93628 -6.05965 -4.13739 0.94018 1.16663 1.33896 3.26935 3.34276 3.34777 3.48757 3.71430 4.13641 4.22521 4.38410 4.51659 4.66150 4.80105 4.87546 5.03164 5.17268 5.25028 5.25914 5.39685 5.45390 5.51355 5.57424 5.67530 5.76074 5.88552 5.96086 6.04910 6.11213 6.17023 6.32648 6.38972 6.56933 6.64839 6.75920 6.87022 6.90079 7.14026 7.35857 7.58755 7.68038 7.82448 7.95304 8.07932 8.29326 8.89059 9.52336 10.99204 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.004714 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.899508 B = 5938.201016 C = 6884.099444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.128 4.128 3 C -0.078 4.078 4 C -0.175 4.175 5 C 0.095 3.905 6 N -0.467 5.467 7 C 0.133 3.867 8 C 0.203 3.797 9 H 0.101 0.899 10 C -0.175 4.175 11 N -1.115 6.115 12 S 2.782 3.218 13 O -0.980 6.980 14 O -1.001 7.001 15 N -0.989 5.989 16 C 0.094 3.906 17 C 0.268 3.732 18 H 0.059 0.941 19 C -0.146 4.146 20 C -0.521 4.521 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.887 5.887 24 Si 0.894 3.106 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.419 0.581 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.093 0.907 43 H 0.012 0.988 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 18.086 -0.732 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.131 4.131 3 C -0.104 4.104 4 C -0.195 4.195 5 C -0.063 4.063 6 N -0.175 5.175 7 C -0.007 4.007 8 C 0.095 3.905 9 H 0.119 0.881 10 C -0.234 4.234 11 N -0.874 5.874 12 S 2.790 3.210 13 O -0.964 6.964 14 O -0.985 6.985 15 N -0.832 5.832 16 C -0.053 4.053 17 C 0.166 3.834 18 H 0.077 0.923 19 C -0.205 4.205 20 C -0.561 4.561 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.526 5.526 24 Si 0.722 3.278 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.200 1.200 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.173 0.827 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.031 0.969 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.403 17.103 0.206 17.272 hybrid contribution 0.524 0.813 -1.510 1.794 sum -1.879 17.916 -1.304 18.062 Atomic orbital electron populations 1.20880 0.90070 1.03358 1.03350 1.20736 0.97751 0.93410 1.01182 1.21439 0.94170 0.97883 0.96882 1.22118 0.95267 0.99595 1.02550 1.22756 1.00323 0.87561 0.95626 1.67363 1.07590 1.31475 1.11082 1.21230 0.90008 0.94365 0.95057 1.19623 0.95525 0.84792 0.90583 0.88091 1.22497 1.04600 1.02183 0.94113 1.56027 1.21839 1.53201 1.56295 1.01782 0.72943 0.72557 0.73670 1.93596 1.66813 1.70277 1.65730 1.93518 1.55197 1.71470 1.78294 1.57669 1.30288 1.33654 1.61552 1.21362 0.85161 1.01909 0.96842 1.18723 0.90834 0.77599 0.96275 0.92345 1.22066 0.99430 1.02837 0.96195 1.21405 1.37412 1.04261 0.93015 0.91663 1.24913 0.95537 0.95516 0.97857 1.69881 1.39617 1.08051 1.35016 0.86568 0.78726 0.77173 0.85317 1.20723 1.21315 1.19962 0.90206 0.91125 0.90521 0.84891 0.84948 0.82745 0.88931 0.92454 0.91026 0.74627 0.93684 0.90495 0.92057 0.94827 0.88882 0.96894 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.25 36.01 0.33 -0.78 16 2 C -0.13 -1.48 5.90 -104.48 -0.62 -2.09 16 3 C -0.08 -0.75 9.86 -39.28 -0.39 -1.13 16 4 C -0.18 -1.63 10.11 -39.44 -0.40 -2.03 16 5 C 0.09 1.07 11.18 -17.55 -0.20 0.87 16 6 N -0.47 -6.69 9.61 -9.47 -0.09 -6.78 16 7 C 0.13 1.86 5.73 -82.59 -0.47 1.39 16 8 C 0.20 3.04 2.81 -69.08 -0.19 2.85 16 9 H 0.10 1.40 5.27 -51.93 -0.27 1.12 16 10 C -0.18 -2.63 9.50 37.16 0.35 -2.28 16 11 N -1.12 -19.24 5.52 -5.88 -0.03 -19.27 16 12 S 2.78 55.34 6.12 -107.50 -0.66 54.68 16 13 O -0.98 -22.95 16.70 -57.17 -0.95 -23.91 16 14 O -1.00 -20.22 16.08 -57.17 -0.92 -21.14 16 15 N -0.99 -20.00 2.79 -115.86 -0.32 -20.32 16 16 C 0.09 1.58 9.66 59.84 0.58 2.16 16 17 C 0.27 6.46 2.62 -69.08 -0.18 6.27 16 18 H 0.06 1.58 6.91 -51.93 -0.36 1.23 16 19 C -0.15 -3.42 8.95 37.16 0.33 -3.09 16 20 C -0.52 -13.03 8.37 -34.43 -0.29 -13.32 16 21 H 0.07 1.56 5.90 -52.49 -0.31 1.25 16 22 C 0.06 1.67 5.30 -17.81 -0.09 1.58 16 23 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 24 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.08 0.71 6.41 -51.93 -0.33 0.37 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 33 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.09 1.53 3.78 -51.93 -0.20 1.33 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.42 7.17 8.29 -34.47 -0.29 6.89 16 38 H 0.04 0.68 6.22 -51.93 -0.32 0.36 16 39 H 0.08 1.30 6.43 -51.93 -0.33 0.97 16 40 H 0.06 0.94 7.02 -51.93 -0.36 0.57 16 41 H 0.03 0.73 6.66 -51.93 -0.35 0.38 16 42 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -31.84 360.33 -9.13 -40.97 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.95 Total: 8.27 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.23 Total: -9.60 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: 0.18 Total: -70.05 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.87 Total: -45.04 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 55.34 SS G_CDS: -0.66 Total: 54.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.84 -9.13 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365748138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.932 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds