Wall clock time and date at job start Tue Mar 31 2020 14:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38664 * 120.42087 * 2 1 4 4 C 1.38626 * 118.42292 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.15814 * 359.97438 * 4 3 2 6 6 N 1.31853 * 120.76544 * 359.72200 * 5 4 3 7 7 C 1.31878 * 121.72334 * 0.56925 * 6 5 4 8 8 C 1.50706 * 119.61960 * 179.70804 * 7 6 5 9 9 H 1.08997 * 109.47120 * 164.73104 * 8 7 6 10 10 C 1.53001 * 109.46967 * 284.72925 * 8 7 6 11 11 N 1.46501 * 109.46842 * 44.72379 * 8 7 6 12 12 S 1.65602 * 119.99659 * 145.00348 * 11 8 7 13 13 O 1.42099 * 106.40239 * 178.54322 * 12 11 8 14 14 O 1.42107 * 106.40175 * 311.46245 * 12 11 8 15 15 N 1.65594 * 107.22151 * 64.99946 * 12 11 8 16 16 C 1.46495 * 120.00207 * 270.00218 * 15 12 11 17 17 C 1.46498 * 119.99696 * 89.99863 * 15 12 11 18 18 H 1.08994 * 109.47278 * 359.97438 * 17 15 12 19 19 C 1.52999 * 109.46931 * 120.00328 * 17 15 12 20 20 C 1.50704 * 109.46973 * 240.00243 * 17 15 12 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 17 15 22 22 C 1.37887 * 119.99968 * 180.02562 * 20 17 15 23 23 N 1.31521 * 119.99683 * 359.97438 * 22 20 17 24 24 Si 1.86797 * 120.00111 * 180.02562 * 22 20 17 25 25 H 1.48491 * 109.47179 * 89.99664 * 24 22 20 26 26 H 1.48495 * 109.46836 * 210.00238 * 24 22 20 27 27 H 1.48502 * 109.46980 * 329.99889 * 24 22 20 28 28 H 1.09001 * 109.47185 * 270.02531 * 1 2 3 29 29 H 1.09001 * 109.46984 * 30.02279 * 1 2 3 30 30 H 1.09001 * 109.47353 * 150.02332 * 1 2 3 31 31 H 1.07997 * 120.79107 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.42387 * 180.02562 * 4 3 2 33 33 H 1.08009 * 119.61685 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47019 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.46835 * 299.99675 * 10 8 7 36 36 H 1.09003 * 109.47265 * 59.99454 * 10 8 7 37 37 H 0.97000 * 120.00177 * 325.00463 * 11 8 7 38 38 H 1.09003 * 109.47140 * 89.99412 * 16 15 12 39 39 H 1.08998 * 109.47533 * 209.99428 * 16 15 12 40 40 H 1.09002 * 109.47178 * 330.00068 * 16 15 12 41 41 H 1.09000 * 109.47215 * 60.00139 * 19 17 15 42 42 H 1.09007 * 109.46946 * 179.97438 * 19 17 15 43 43 H 1.08991 * 109.47529 * 299.99547 * 19 17 15 44 44 H 0.96994 * 119.99674 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0076 7 6 2.2067 -1.1917 0.0016 8 6 1.4538 -2.4972 0.0023 9 1 0.4123 -2.3160 0.2676 10 6 1.5231 -3.1265 -1.3906 11 7 2.0557 -3.4075 0.9797 12 16 1.0987 -4.4524 1.8368 13 8 1.9718 -5.2108 2.6625 14 8 0.0202 -3.6812 2.3481 15 7 0.4399 -5.5159 0.7519 16 6 -0.8421 -5.2099 0.1124 17 6 1.1391 -6.7627 0.4315 18 1 2.0680 -6.8146 0.9994 19 6 0.2507 -7.9538 0.7959 20 6 1.4496 -6.8000 -1.0427 21 1 1.1557 -5.9771 -1.6775 22 6 2.1087 -7.8848 -1.5813 23 7 2.4669 -8.8867 -0.8082 24 14 2.4941 -7.9307 -3.4085 25 1 3.8247 -7.3172 -3.6493 26 1 2.5067 -9.3400 -3.8763 27 1 1.4570 -7.1715 -4.1523 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6891 2.1422 -0.0004 32 1 4.1736 2.0591 0.0010 33 1 5.3047 -0.1287 0.0025 34 1 0.9790 -4.0710 -1.3901 35 1 1.0753 -2.4493 -2.1179 36 1 2.5647 -3.3077 -1.6561 37 1 3.0147 -3.3981 1.1249 38 1 -0.6650 -4.6596 -0.8117 39 1 -1.3668 -6.1384 -0.1126 40 1 -1.4485 -4.6038 0.7856 41 1 -0.6780 -7.9017 0.2276 42 1 0.7708 -8.8815 0.5571 43 1 0.0262 -7.9269 1.8621 44 1 2.9303 -9.6500 -1.1871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365748138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:42 Heat of formation + Delta-G solvation = -64.422013 kcal Electronic energy + Delta-G solvation = -27426.406822 eV Core-core repulsion = 23697.682500 eV Total energy + Delta-G solvation = -3728.724322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.41643 -38.37745 -37.96137 -37.13917 -36.91568 -34.57928 -34.46419 -32.61528 -30.91459 -30.30249 -28.14467 -27.26722 -26.92543 -25.39470 -23.17333 -22.57349 -22.15967 -20.36257 -18.95131 -18.59344 -18.30893 -17.75043 -17.39902 -16.99679 -16.47530 -16.04160 -15.54905 -15.34385 -15.12273 -14.92139 -14.72667 -14.61428 -14.20372 -13.89262 -13.65794 -13.58663 -13.46101 -13.34288 -13.22280 -13.21262 -13.14097 -12.91972 -12.80012 -12.75848 -12.59727 -12.54664 -12.21160 -12.09765 -11.93017 -11.68627 -11.08661 -10.71885 -10.61466 -10.45306 -10.23162 -9.72092 -9.60716 -8.04516 -6.17645 -0.31899 0.17010 0.39160 1.46209 1.48257 1.56268 2.00234 2.48299 2.60035 2.85404 3.21911 3.24775 3.47035 3.66610 3.95509 3.98596 4.10356 4.16653 4.21942 4.33243 4.45600 4.60433 4.66289 4.77442 4.78271 4.81150 4.85577 4.95035 4.99334 5.05734 5.11887 5.17479 5.22001 5.22908 5.31332 5.35230 5.48776 5.67026 5.76906 5.83176 5.90502 6.06336 6.18345 6.34470 6.92220 7.09647 7.51439 9.00301 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.004714 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.899508 B = 5938.201016 C = 6884.099444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.078 4.078 4 C -0.163 4.163 5 C 0.075 3.925 6 N -0.503 5.503 7 C 0.103 3.897 8 C 0.200 3.800 9 H 0.112 0.888 10 C -0.168 4.168 11 N -1.111 6.111 12 S 2.796 3.204 13 O -1.021 7.021 14 O -1.003 7.003 15 N -0.992 5.992 16 C 0.086 3.914 17 C 0.274 3.726 18 H 0.020 0.980 19 C -0.139 4.139 20 C -0.519 4.519 21 H 0.077 0.923 22 C 0.015 3.985 23 N -0.920 5.920 24 Si 0.953 3.047 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.261 1.261 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.167 0.833 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.418 0.582 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 21.121 -2.126 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.136 4.136 3 C -0.104 4.104 4 C -0.183 4.183 5 C -0.082 4.082 6 N -0.212 5.212 7 C -0.036 4.036 8 C 0.092 3.908 9 H 0.130 0.870 10 C -0.227 4.227 11 N -0.871 5.871 12 S 2.806 3.194 13 O -1.005 7.005 14 O -0.986 6.986 15 N -0.834 5.834 16 C -0.059 4.059 17 C 0.170 3.830 18 H 0.038 0.962 19 C -0.199 4.199 20 C -0.559 4.559 21 H 0.095 0.905 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.780 3.220 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.185 1.185 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.185 0.815 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.253 0.747 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.454 20.156 -1.194 20.485 hybrid contribution 0.867 0.015 -1.046 1.359 sum -2.587 20.172 -2.241 20.460 Atomic orbital electron populations 1.20959 0.88705 1.04623 1.03578 1.21004 0.98889 0.93224 1.00524 1.21886 0.94435 0.98524 0.95534 1.22509 0.95627 1.00024 1.00117 1.23184 1.01262 0.87818 0.95942 1.67258 1.08209 1.33417 1.12308 1.21099 0.90229 0.94463 0.97792 1.19807 0.96229 0.85164 0.89578 0.87007 1.22407 1.03171 1.02057 0.95100 1.55818 1.21499 1.53049 1.56741 1.01176 0.72537 0.72330 0.73406 1.93536 1.67920 1.71600 1.67466 1.93504 1.55360 1.71281 1.78498 1.57506 1.31396 1.32684 1.61802 1.21613 0.83757 1.02531 0.98003 1.18379 0.89890 0.79308 0.95421 0.96227 1.21948 0.99652 1.01533 0.96780 1.21692 1.36499 1.04169 0.93516 0.90526 1.25654 0.95762 0.95426 1.01571 1.70026 1.40684 1.08665 1.36619 0.85629 0.78474 0.76946 0.80976 1.21104 1.21573 1.18478 0.90390 0.88463 0.90733 0.81518 0.81517 0.81105 0.90477 0.89886 0.93055 0.74724 0.91765 0.90464 0.90236 0.93245 0.91276 0.96343 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.25 71.24 0.66 -1.26 16 2 C -0.13 -2.76 5.90 -19.77 -0.12 -2.88 16 3 C -0.08 -1.22 9.86 22.46 0.22 -1.00 16 4 C -0.16 -2.51 10.11 22.36 0.23 -2.28 16 5 C 0.08 1.58 11.18 84.69 0.95 2.52 16 6 N -0.50 -14.17 9.61 -183.87 -1.77 -15.93 16 7 C 0.10 2.77 5.73 42.54 0.24 3.02 16 8 C 0.20 5.83 2.81 44.25 0.12 5.96 16 9 H 0.11 2.95 5.27 -2.39 -0.01 2.94 16 10 C -0.17 -4.93 9.50 71.98 0.68 -4.24 16 11 N -1.11 -38.80 5.52 -172.51 -0.95 -39.75 16 12 S 2.80 112.43 6.12 -56.49 -0.35 112.08 16 13 O -1.02 -49.56 16.70 -128.00 -2.14 -51.70 16 14 O -1.00 -39.82 16.08 -128.00 -2.06 -41.88 16 15 N -0.99 -40.05 2.79 -520.46 -1.45 -41.50 16 16 C 0.09 2.78 9.66 127.77 1.23 4.02 16 17 C 0.27 13.44 2.62 44.25 0.12 13.56 16 18 H 0.02 1.13 6.91 -2.39 -0.02 1.11 16 19 C -0.14 -6.65 8.95 71.98 0.64 -6.01 16 20 C -0.52 -26.01 8.37 25.60 0.21 -25.80 16 21 H 0.08 3.59 5.90 -2.91 -0.02 3.58 16 22 C 0.02 0.79 5.30 84.66 0.45 1.24 16 23 N -0.92 -51.62 11.32 21.45 0.24 -51.38 16 24 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 0.99 8.10 -2.39 -0.02 0.97 16 30 H 0.07 1.19 6.41 -2.39 -0.02 1.17 16 31 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.08 2.46 3.78 -2.39 -0.01 2.45 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 14.86 8.29 -96.74 -0.80 14.06 16 38 H 0.06 1.83 6.22 -2.39 -0.01 1.81 16 39 H 0.08 2.49 6.43 -2.39 -0.02 2.48 16 40 H 0.08 2.28 7.02 -2.39 -0.02 2.26 16 41 H 0.05 2.14 6.66 -2.39 -0.02 2.12 16 42 H 0.07 3.65 6.07 -2.38 -0.01 3.64 16 43 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -69.84 360.33 -0.57 -70.40 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.23 Total: 29.00 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.65 Total: -13.16 kcal Atomic # 7 Polarization: -144.64 SS G_CDS: -3.93 Total: -148.57 kcal Atomic # 8 Polarization: -89.38 SS G_CDS: -4.20 Total: -93.58 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 112.43 SS G_CDS: -0.35 Total: 112.08 kcal Total: -69.84 -0.57 -70.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365748138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.980 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds