Wall clock time and date at job start Tue Mar 31 2020 14:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38669 * 120.41794 * 2 1 4 4 C 1.38636 * 118.42038 * 179.97438 * 3 2 1 5 5 C 1.38223 * 119.16142 * 359.97438 * 4 3 2 6 6 N 1.31858 * 120.76037 * 359.72804 * 5 4 3 7 7 C 1.31884 * 121.72720 * 0.56274 * 6 5 4 8 8 C 1.50700 * 119.61800 * 179.71412 * 7 6 5 9 9 H 1.08993 * 109.47310 * 164.72956 * 8 7 6 10 10 C 1.53005 * 109.47007 * 284.72492 * 8 7 6 11 11 N 1.46500 * 109.47495 * 44.72474 * 8 7 6 12 12 S 1.65593 * 119.99925 * 145.00018 * 11 8 7 13 13 O 1.42096 * 106.40460 * 311.46213 * 12 11 8 14 14 O 1.42108 * 106.40218 * 178.54273 * 12 11 8 15 15 N 1.65606 * 107.21842 * 65.00539 * 12 11 8 16 16 C 1.46497 * 119.99739 * 269.99739 * 15 12 11 17 17 C 1.46497 * 120.00188 * 89.99816 * 15 12 11 18 18 H 1.09007 * 109.47078 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47021 * 240.00233 * 17 15 12 20 20 C 1.50694 * 109.47115 * 120.00014 * 17 15 12 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.09003 * 109.46693 * 270.02294 * 1 2 3 29 29 H 1.09000 * 109.47084 * 30.01727 * 1 2 3 30 30 H 1.08997 * 109.47114 * 150.02141 * 1 2 3 31 31 H 1.08005 * 120.79443 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.41687 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.61815 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47381 * 179.97438 * 10 8 7 35 35 H 1.09005 * 109.47058 * 300.00155 * 10 8 7 36 36 H 1.09001 * 109.46665 * 59.99798 * 10 8 7 37 37 H 0.97005 * 119.99538 * 325.00779 * 11 8 7 38 38 H 1.09001 * 109.46905 * 270.00036 * 16 15 12 39 39 H 1.09005 * 109.47144 * 29.99977 * 16 15 12 40 40 H 1.08993 * 109.47302 * 150.00165 * 16 15 12 41 41 H 1.09002 * 109.47106 * 299.99878 * 19 17 15 42 42 H 1.08998 * 109.47089 * 59.99825 * 19 17 15 43 43 H 1.08995 * 109.47131 * 179.97438 * 19 17 15 44 44 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2257 -0.0823 0.0016 6 7 3.5254 -1.1996 0.0075 7 6 2.2066 -1.1916 0.0015 8 6 1.4539 -2.4972 0.0021 9 1 0.4125 -2.3160 0.2675 10 6 1.5231 -3.1264 -1.3908 11 7 2.0558 -3.4075 0.9796 12 16 1.0988 -4.4524 1.8366 13 8 0.0203 -3.6812 2.3479 14 8 1.9720 -5.2108 2.6623 15 7 0.4401 -5.5159 0.7515 16 6 -0.8420 -5.2099 0.1121 17 6 1.1393 -6.7627 0.4311 18 1 2.0683 -6.8146 0.9991 19 6 1.4545 -6.8005 -1.0656 20 6 0.2643 -7.9359 0.7900 21 1 -0.7147 -7.7696 1.2147 22 6 0.7139 -9.2219 0.5771 23 7 1.9062 -9.4246 0.0603 24 14 -0.3705 -10.6762 1.0226 25 1 0.3383 -11.9401 0.6977 26 1 -0.6763 -10.6389 2.4753 27 1 -1.6358 -10.6057 0.2485 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6890 2.1424 0.0004 32 1 4.1735 2.0592 0.0010 33 1 5.3046 -0.1285 0.0025 34 1 0.9792 -4.0709 -1.3903 35 1 1.0753 -2.4491 -2.1181 36 1 2.5647 -3.3075 -1.6563 37 1 3.0148 -3.3980 1.1248 38 1 -1.6550 -5.6084 0.7190 39 1 -0.9533 -4.1295 0.0198 40 1 -0.8716 -5.6641 -0.8783 41 1 0.5258 -6.7484 -1.6339 42 1 2.0874 -5.9519 -1.3251 43 1 1.9752 -7.7279 -1.3039 44 1 2.2226 -10.3292 -0.0891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365748140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:55 Heat of formation + Delta-G solvation = -42.465082 kcal Electronic energy + Delta-G solvation = -27218.341198 eV Core-core repulsion = 23490.569000 eV Total energy + Delta-G solvation = -3727.772198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.64148 -36.75267 -36.36250 -35.89055 -35.18158 -33.84303 -32.55268 -31.73778 -29.31527 -29.05160 -27.46036 -25.57600 -25.12285 -24.51812 -22.42037 -21.25953 -20.74188 -18.86692 -17.60020 -17.16937 -16.70763 -16.53805 -16.12662 -15.51873 -15.16120 -14.77083 -14.50169 -14.23723 -13.84187 -13.48654 -13.40863 -13.26549 -13.15467 -12.83418 -12.77782 -12.66042 -12.19739 -12.03581 -11.89867 -11.71952 -11.46420 -11.41755 -11.24994 -11.16855 -10.95387 -10.91604 -10.76912 -10.43816 -10.23214 -10.00220 -9.90801 -9.69027 -9.30395 -9.18927 -8.93469 -8.41571 -7.93918 -6.03342 -4.09827 0.86218 1.09011 1.29097 3.32716 3.37120 3.40014 3.46229 3.65291 4.04816 4.20621 4.43303 4.43520 4.59341 4.72337 4.80411 4.99986 5.07795 5.18840 5.25422 5.28003 5.35966 5.44200 5.47544 5.51813 5.66448 5.81761 5.87691 5.92329 6.04348 6.12327 6.20885 6.29317 6.44241 6.53726 6.65153 6.82986 6.83696 7.06874 7.27548 7.54400 7.67625 7.83550 7.86039 8.08887 8.31952 8.92091 9.55679 11.02176 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.003563 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.044737 B = 7855.610683 C = 8028.149693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 C -0.077 4.077 4 C -0.174 4.174 5 C 0.095 3.905 6 N -0.468 5.468 7 C 0.131 3.869 8 C 0.201 3.799 9 H 0.103 0.897 10 C -0.172 4.172 11 N -1.120 6.120 12 S 2.778 3.222 13 O -0.998 6.998 14 O -0.973 6.973 15 N -0.989 5.989 16 C 0.108 3.892 17 C 0.270 3.730 18 H 0.059 0.941 19 C -0.149 4.149 20 C -0.520 4.520 21 H 0.062 0.938 22 C 0.064 3.936 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.287 1.287 26 H -0.276 1.276 27 H -0.277 1.277 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.419 0.581 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.015 0.985 43 H 0.092 0.908 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 20.695 -4.861 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.130 4.130 3 C -0.103 4.103 4 C -0.194 4.194 5 C -0.063 4.063 6 N -0.176 5.176 7 C -0.009 4.009 8 C 0.092 3.908 9 H 0.121 0.879 10 C -0.231 4.231 11 N -0.879 5.879 12 S 2.787 3.213 13 O -0.981 6.981 14 O -0.957 6.957 15 N -0.832 5.832 16 C -0.039 4.039 17 C 0.167 3.833 18 H 0.077 0.923 19 C -0.208 4.208 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.726 3.274 25 H -0.213 1.213 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.173 0.827 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.034 0.966 43 H 0.110 0.890 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.366 19.744 -3.972 20.143 hybrid contribution -0.337 0.086 -0.189 0.395 sum 0.029 19.830 -4.161 20.262 Atomic orbital electron populations 1.20887 0.90017 1.03358 1.03455 1.20742 0.97782 0.93410 1.01034 1.21458 0.94174 0.97918 0.96760 1.22132 0.95271 0.99633 1.02344 1.22750 1.00323 0.87551 0.95647 1.67345 1.07546 1.31544 1.11188 1.21181 0.90022 0.94288 0.95369 1.19647 0.95801 0.84983 0.90330 0.87937 1.22424 1.04134 1.01898 0.94629 1.56226 1.21930 1.53226 1.56508 1.01976 0.73121 0.72489 0.73733 1.93526 1.55075 1.71614 1.77929 1.93617 1.66825 1.69989 1.65228 1.57700 1.30087 1.33186 1.62219 1.21184 0.85527 0.98019 0.99164 1.18713 0.92595 0.78835 0.93175 0.92345 1.22149 0.99204 1.01368 0.98121 1.21305 1.02623 0.90168 1.41864 0.92022 1.24904 0.95179 0.98810 0.94980 1.69854 1.17465 1.21555 1.43987 0.86566 0.80349 0.81453 0.79059 1.21282 1.20203 1.20285 0.90118 0.91050 0.90572 0.84820 0.84881 0.82689 0.89922 0.92004 0.91121 0.74683 0.93179 0.93544 0.90838 0.94842 0.96632 0.88984 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.25 36.01 0.33 -0.70 16 2 C -0.13 -1.36 5.90 -104.48 -0.62 -1.97 16 3 C -0.08 -0.68 9.86 -39.28 -0.39 -1.07 16 4 C -0.17 -1.47 10.11 -39.44 -0.40 -1.87 16 5 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 6 N -0.47 -6.12 9.61 -9.48 -0.09 -6.21 16 7 C 0.13 1.69 5.73 -82.59 -0.47 1.21 16 8 C 0.20 2.75 2.81 -69.08 -0.19 2.55 16 9 H 0.10 1.32 4.83 -51.93 -0.25 1.07 16 10 C -0.17 -2.18 9.49 37.16 0.35 -1.83 16 11 N -1.12 -18.14 5.52 -5.88 -0.03 -18.17 16 12 S 2.78 55.60 6.07 -107.50 -0.65 54.95 16 13 O -1.00 -20.67 16.55 -57.17 -0.95 -21.61 16 14 O -0.97 -23.39 16.70 -57.17 -0.95 -24.35 16 15 N -0.99 -20.18 2.79 -115.86 -0.32 -20.50 16 16 C 0.11 1.84 8.39 59.85 0.50 2.34 16 17 C 0.27 6.54 2.62 -69.09 -0.18 6.36 16 18 H 0.06 1.60 6.91 -51.92 -0.36 1.24 16 19 C -0.15 -3.31 8.66 37.16 0.32 -2.98 16 20 C -0.52 -13.96 8.37 -34.44 -0.29 -14.25 16 21 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 24 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.08 0.64 6.41 -51.93 -0.33 0.30 16 31 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.08 1.13 5.56 -51.93 -0.29 0.84 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.42 6.62 8.29 -34.47 -0.29 6.34 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 40 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 41 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 42 H 0.01 0.29 7.41 -51.93 -0.38 -0.09 16 43 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -33.22 363.80 -9.43 -42.65 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.19 Total: 5.58 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -1.32 Total: -9.81 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: 0.18 Total: -69.08 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -1.90 Total: -45.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.65 Total: 54.95 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.22 -9.43 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365748140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.185 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds