Wall clock time and date at job start Tue Mar 31 2020 14:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38669 * 120.41794 * 2 1 4 4 C 1.38636 * 118.42038 * 179.97438 * 3 2 1 5 5 C 1.38223 * 119.16142 * 359.97438 * 4 3 2 6 6 N 1.31858 * 120.76037 * 359.72804 * 5 4 3 7 7 C 1.31884 * 121.72720 * 0.56274 * 6 5 4 8 8 C 1.50700 * 119.61800 * 179.71412 * 7 6 5 9 9 H 1.08993 * 109.47310 * 164.72956 * 8 7 6 10 10 C 1.53005 * 109.47007 * 284.72492 * 8 7 6 11 11 N 1.46500 * 109.47495 * 44.72474 * 8 7 6 12 12 S 1.65593 * 119.99925 * 145.00018 * 11 8 7 13 13 O 1.42096 * 106.40460 * 311.46213 * 12 11 8 14 14 O 1.42108 * 106.40218 * 178.54273 * 12 11 8 15 15 N 1.65606 * 107.21842 * 65.00539 * 12 11 8 16 16 C 1.46497 * 119.99739 * 269.99739 * 15 12 11 17 17 C 1.46497 * 120.00188 * 89.99816 * 15 12 11 18 18 H 1.09007 * 109.47078 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47021 * 240.00233 * 17 15 12 20 20 C 1.50694 * 109.47115 * 120.00014 * 17 15 12 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.09003 * 109.46693 * 270.02294 * 1 2 3 29 29 H 1.09000 * 109.47084 * 30.01727 * 1 2 3 30 30 H 1.08997 * 109.47114 * 150.02141 * 1 2 3 31 31 H 1.08005 * 120.79443 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.41687 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.61815 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47381 * 179.97438 * 10 8 7 35 35 H 1.09005 * 109.47058 * 300.00155 * 10 8 7 36 36 H 1.09001 * 109.46665 * 59.99798 * 10 8 7 37 37 H 0.97005 * 119.99538 * 325.00779 * 11 8 7 38 38 H 1.09001 * 109.46905 * 270.00036 * 16 15 12 39 39 H 1.09005 * 109.47144 * 29.99977 * 16 15 12 40 40 H 1.08993 * 109.47302 * 150.00165 * 16 15 12 41 41 H 1.09002 * 109.47106 * 299.99878 * 19 17 15 42 42 H 1.08998 * 109.47089 * 59.99825 * 19 17 15 43 43 H 1.08995 * 109.47131 * 179.97438 * 19 17 15 44 44 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2257 -0.0823 0.0016 6 7 3.5254 -1.1996 0.0075 7 6 2.2066 -1.1916 0.0015 8 6 1.4539 -2.4972 0.0021 9 1 0.4125 -2.3160 0.2675 10 6 1.5231 -3.1264 -1.3908 11 7 2.0558 -3.4075 0.9796 12 16 1.0988 -4.4524 1.8366 13 8 0.0203 -3.6812 2.3479 14 8 1.9720 -5.2108 2.6623 15 7 0.4401 -5.5159 0.7515 16 6 -0.8420 -5.2099 0.1121 17 6 1.1393 -6.7627 0.4311 18 1 2.0683 -6.8146 0.9991 19 6 1.4545 -6.8005 -1.0656 20 6 0.2643 -7.9359 0.7900 21 1 -0.7147 -7.7696 1.2147 22 6 0.7139 -9.2219 0.5771 23 7 1.9062 -9.4246 0.0603 24 14 -0.3705 -10.6762 1.0226 25 1 0.3383 -11.9401 0.6977 26 1 -0.6763 -10.6389 2.4753 27 1 -1.6358 -10.6057 0.2485 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6890 2.1424 0.0004 32 1 4.1735 2.0592 0.0010 33 1 5.3046 -0.1285 0.0025 34 1 0.9792 -4.0709 -1.3903 35 1 1.0753 -2.4491 -2.1181 36 1 2.5647 -3.3075 -1.6563 37 1 3.0148 -3.3980 1.1248 38 1 -1.6550 -5.6084 0.7190 39 1 -0.9533 -4.1295 0.0198 40 1 -0.8716 -5.6641 -0.8783 41 1 0.5258 -6.7484 -1.6339 42 1 2.0874 -5.9519 -1.3251 43 1 1.9752 -7.7279 -1.3039 44 1 2.2226 -10.3292 -0.0891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365748140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:54 Heat of formation + Delta-G solvation = -66.403535 kcal Electronic energy + Delta-G solvation = -27219.379247 eV Core-core repulsion = 23490.569000 eV Total energy + Delta-G solvation = -3728.810248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42407 -38.38014 -37.98665 -37.16244 -36.90572 -34.58428 -34.50863 -32.63113 -30.89253 -30.35860 -28.15543 -27.26421 -26.96183 -25.41179 -23.19357 -22.55087 -22.18205 -20.35198 -19.01225 -18.60134 -18.39486 -17.70607 -17.40330 -17.00449 -16.46134 -16.06715 -15.56528 -15.32907 -15.13460 -14.87251 -14.77429 -14.58102 -14.19838 -13.90196 -13.78818 -13.59237 -13.41273 -13.39950 -13.26886 -13.20725 -13.09204 -12.95102 -12.85688 -12.75647 -12.57207 -12.56755 -12.23814 -12.10130 -11.92801 -11.77115 -11.13110 -10.76558 -10.62238 -10.47568 -10.25630 -9.73050 -9.63142 -8.08987 -6.22607 -0.36710 0.16499 0.38450 1.44033 1.46309 1.53085 2.02285 2.44819 2.60871 2.85095 3.19096 3.20043 3.45691 3.64851 3.93824 3.97288 4.04680 4.15327 4.21350 4.29841 4.43502 4.60285 4.65060 4.71654 4.78990 4.83846 4.85676 4.92236 4.99166 5.05552 5.09796 5.19282 5.20396 5.22912 5.29679 5.33627 5.41805 5.64431 5.72986 5.82334 5.90647 6.04307 6.20532 6.33534 6.85040 7.07964 7.46147 8.94809 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.003563 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.044737 B = 7855.610683 C = 8028.149693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.078 4.078 4 C -0.163 4.163 5 C 0.076 3.924 6 N -0.500 5.500 7 C 0.103 3.897 8 C 0.195 3.805 9 H 0.110 0.890 10 C -0.166 4.166 11 N -1.111 6.111 12 S 2.794 3.206 13 O -1.006 7.006 14 O -1.020 7.020 15 N -0.992 5.992 16 C 0.099 3.901 17 C 0.276 3.724 18 H 0.020 0.980 19 C -0.134 4.134 20 C -0.538 4.538 21 H 0.058 0.942 22 C 0.017 3.983 23 N -0.914 5.914 24 Si 0.955 3.045 25 H -0.283 1.283 26 H -0.280 1.280 27 H -0.265 1.265 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.420 0.580 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 23.078 -5.926 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.137 4.137 3 C -0.104 4.104 4 C -0.183 4.183 5 C -0.081 4.081 6 N -0.209 5.209 7 C -0.036 4.036 8 C 0.088 3.912 9 H 0.128 0.872 10 C -0.225 4.225 11 N -0.872 5.872 12 S 2.803 3.197 13 O -0.989 6.989 14 O -1.004 7.004 15 N -0.834 5.834 16 C -0.046 4.046 17 C 0.171 3.829 18 H 0.038 0.962 19 C -0.193 4.193 20 C -0.578 4.578 21 H 0.076 0.924 22 C -0.183 4.183 23 N -0.553 5.553 24 Si 0.781 3.219 25 H -0.209 1.209 26 H -0.206 1.206 27 H -0.190 1.190 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.183 0.817 32 H 0.184 0.816 33 H 0.191 0.809 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.676 22.139 -5.045 22.716 hybrid contribution 0.032 -0.487 0.143 0.508 sum -0.644 21.652 -4.902 22.209 Atomic orbital electron populations 1.20962 0.88812 1.04679 1.03490 1.20999 0.98827 0.93315 1.00553 1.21887 0.94484 0.98520 0.95525 1.22514 0.95576 1.00123 1.00063 1.23191 1.01306 0.87764 0.95831 1.67255 1.08039 1.33331 1.12308 1.21070 0.90277 0.94365 0.97906 1.19885 0.96227 0.85284 0.89814 0.87234 1.22364 1.03395 1.01966 0.94814 1.55879 1.21556 1.52819 1.56917 1.01273 0.72653 0.72292 0.73466 1.93506 1.55520 1.71543 1.78309 1.93547 1.68033 1.71543 1.67270 1.57526 1.31271 1.32250 1.62391 1.21434 0.83655 1.00373 0.99131 1.18368 0.90999 0.79752 0.93742 0.96222 1.21921 0.99884 1.00779 0.96740 1.21642 1.02814 0.91443 1.41867 0.92404 1.25641 0.96360 1.01254 0.95014 1.69983 1.18691 1.21974 1.44665 0.85660 0.79227 0.78546 0.78470 1.20851 1.20620 1.18954 0.90623 0.88494 0.90586 0.81673 0.81587 0.80945 0.90884 0.89448 0.92361 0.74496 0.93792 0.90140 0.89918 0.93470 0.94467 0.91798 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.25 71.24 0.66 -1.13 16 2 C -0.13 -2.56 5.90 -19.77 -0.12 -2.67 16 3 C -0.08 -1.12 9.86 22.47 0.22 -0.90 16 4 C -0.16 -2.25 10.11 22.36 0.23 -2.03 16 5 C 0.08 1.44 11.18 84.69 0.95 2.38 16 6 N -0.50 -12.74 9.61 -183.89 -1.77 -14.51 16 7 C 0.10 2.52 5.73 42.54 0.24 2.77 16 8 C 0.20 5.16 2.81 44.25 0.12 5.28 16 9 H 0.11 2.68 4.83 -2.39 -0.01 2.67 16 10 C -0.17 -4.03 9.49 71.98 0.68 -3.35 16 11 N -1.11 -36.22 5.52 -172.52 -0.95 -37.17 16 12 S 2.79 113.51 6.07 -56.49 -0.34 113.17 16 13 O -1.01 -41.37 16.55 -128.00 -2.12 -43.49 16 14 O -1.02 -51.05 16.70 -128.00 -2.14 -53.19 16 15 N -0.99 -40.65 2.79 -520.46 -1.45 -42.10 16 16 C 0.10 3.29 8.39 127.77 1.07 4.36 16 17 C 0.28 13.65 2.62 44.24 0.12 13.77 16 18 H 0.02 1.14 6.91 -2.38 -0.02 1.12 16 19 C -0.13 -5.97 8.66 71.98 0.62 -5.34 16 20 C -0.54 -29.31 8.37 25.60 0.21 -29.10 16 21 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 22 C 0.02 0.94 5.30 84.66 0.45 1.39 16 23 N -0.91 -51.97 11.32 21.45 0.24 -51.73 16 24 Si 0.96 43.67 29.54 68.60 2.03 45.69 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.08 1.09 6.41 -2.39 -0.02 1.07 16 31 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.07 1.89 5.56 -2.39 -0.01 1.88 16 35 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.42 13.69 8.29 -96.74 -0.80 12.89 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.08 2.08 7.35 -2.38 -0.02 2.06 16 40 H 0.08 2.57 6.43 -2.39 -0.02 2.56 16 41 H 0.05 1.92 6.66 -2.39 -0.02 1.91 16 42 H 0.04 1.44 7.41 -2.39 -0.02 1.43 16 43 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 44 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -73.24 363.80 -0.82 -74.06 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.22 Total: 23.83 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 5.46 Total: -14.56 kcal Atomic # 7 Polarization: -141.58 SS G_CDS: -3.93 Total: -145.51 kcal Atomic # 8 Polarization: -92.42 SS G_CDS: -4.26 Total: -96.68 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 113.51 SS G_CDS: -0.34 Total: 113.17 kcal Total: -73.24 -0.82 -74.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365748140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.658 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds