Wall clock time and date at job start Tue Mar 31 2020 15:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34489 * 126.83495 * 2 1 4 4 N 1.36447 * 108.86569 * 179.73963 * 3 2 1 5 5 H 0.96998 * 124.85097 * 179.97438 * 4 3 2 6 6 C 1.34668 * 110.29455 * 0.02562 * 4 3 2 7 7 C 1.50696 * 125.80155 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47480 * 264.97474 * 7 6 4 9 9 N 1.34770 * 120.00304 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99380 * 0.02562 * 8 7 6 11 11 C 1.36784 * 108.39669 * 359.97438 * 6 4 3 12 12 C 1.47233 * 126.94327 * 180.02562 * 11 6 4 13 13 O 1.21641 * 119.99485 * 269.99597 * 12 11 6 14 14 N 1.34777 * 120.00122 * 90.00186 * 12 11 6 15 15 C 1.39882 * 119.99510 * 174.88826 * 14 12 11 16 16 C 1.39309 * 119.94751 * 145.61977 * 15 14 12 17 17 C 1.38473 * 120.42945 * 180.02562 * 16 15 14 18 18 C 1.37688 * 120.32204 * 359.97438 * 17 16 15 19 19 C 1.40737 * 119.88794 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21091 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00082 * 25.23388 * 20 19 18 22 22 C 1.39931 * 120.00208 * 205.23533 * 20 19 18 23 23 N 1.30821 * 119.99952 * 16.70525 * 22 20 19 24 24 Si 1.86802 * 120.00035 * 196.70512 * 22 20 19 25 25 H 1.48506 * 109.46772 * 89.99941 * 24 22 20 26 26 H 1.48492 * 109.47288 * 209.99838 * 24 22 20 27 27 H 1.48505 * 109.47096 * 330.00364 * 24 22 20 28 28 C 1.38255 * 119.94958 * 325.33813 * 15 14 12 29 29 H 1.08998 * 109.47597 * 90.02285 * 1 2 3 30 30 H 1.09001 * 109.46921 * 210.02072 * 1 2 3 31 31 H 1.09004 * 109.47284 * 330.01745 * 1 2 3 32 32 H 1.08008 * 125.56253 * 359.73865 * 3 2 1 33 33 H 1.09009 * 109.47145 * 24.97550 * 7 6 4 34 34 H 1.09000 * 109.47216 * 144.96867 * 7 6 4 35 35 H 0.97004 * 120.00058 * 0.02562 * 9 8 7 36 36 H 0.97005 * 120.00131 * 179.97438 * 9 8 7 37 37 H 0.96993 * 119.99845 * 354.87776 * 14 12 11 38 38 H 1.08008 * 119.78380 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.84250 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.05413 * 180.02562 * 18 17 16 41 41 H 0.97000 * 120.00084 * 180.02562 * 23 22 20 42 42 H 1.07997 * 120.15956 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6555 0.0059 5 1 4.3839 1.2416 0.0067 6 6 3.6657 -0.6901 0.0092 7 6 4.9227 -1.5213 0.0164 8 6 5.2791 -1.9055 -1.3966 9 7 6.3737 -2.6545 -1.6356 10 8 4.5813 -1.5398 -2.3187 11 6 2.3864 -1.1741 0.0060 12 6 1.9751 -2.5878 0.0085 13 8 1.8088 -3.1746 -1.0440 14 7 1.7827 -3.2317 1.1768 15 6 1.2895 -4.5407 1.1809 16 6 1.7201 -5.4431 2.1509 17 6 1.2388 -6.7414 2.1640 18 6 0.3280 -7.1546 1.2177 19 6 -0.1171 -6.2538 0.2322 20 6 -1.0528 -6.6708 -0.7426 21 1 -1.7254 -7.4888 -0.5304 22 6 -1.1073 -6.0237 -1.9821 23 7 -0.1100 -5.2723 -2.3721 24 14 -2.6042 -6.2329 -3.0798 25 1 -3.6006 -5.1777 -2.7645 26 1 -2.1948 -6.1177 -4.5025 27 1 -3.2075 -7.5694 -2.8449 28 6 0.3709 -4.9351 0.2258 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5136 32 1 1.9866 2.1059 -0.0040 33 1 5.7378 -0.9437 0.4524 34 1 4.7591 -2.4223 0.6076 35 1 6.9320 -2.9466 -0.8981 36 1 6.6029 -2.9020 -2.5451 37 1 1.9864 -2.7875 2.0146 38 1 2.4347 -5.1282 2.8970 39 1 1.5794 -7.4332 2.9200 40 1 -0.0449 -8.1682 1.2322 41 1 -0.1480 -4.8235 -3.2311 42 1 0.0327 -4.2349 -0.5235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412974067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:02 Heat of formation + Delta-G solvation = -8.680592 kcal Electronic energy + Delta-G solvation = -27733.821378 eV Core-core repulsion = 23872.070234 eV Total energy + Delta-G solvation = -3861.751144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.23702 -39.10554 -38.88942 -36.78139 -34.01227 -33.67430 -32.95154 -32.68841 -31.53215 -29.41897 -28.70006 -27.49926 -25.81676 -25.12013 -22.91890 -21.17812 -20.92720 -20.06046 -19.29573 -18.66703 -17.93288 -17.36165 -17.01459 -16.58026 -15.81355 -15.57712 -15.02201 -14.72071 -14.57206 -14.27606 -14.02153 -13.57995 -13.33934 -13.17690 -13.07659 -12.72185 -12.55183 -12.47055 -12.38645 -12.12443 -11.88402 -11.47790 -11.16667 -10.97834 -10.96273 -10.61327 -10.42006 -9.97548 -9.89453 -9.67144 -9.58782 -9.15924 -8.84677 -8.70342 -8.28993 -7.99231 -7.24198 -6.77906 -6.41895 -4.16696 2.16471 2.68312 2.76932 2.83321 3.05507 3.20881 3.21318 3.24300 3.33871 3.63248 3.66939 4.10443 4.16412 4.52509 4.82455 4.83341 4.99629 5.14504 5.29750 5.45596 5.56485 5.75110 5.87255 6.01134 6.12008 6.26606 6.31333 6.39981 6.55073 6.76298 6.86605 6.96693 7.10130 7.17419 7.22806 7.27353 7.29734 7.48086 7.57920 7.80367 7.94508 8.01901 8.23178 8.29318 8.45748 8.58373 8.76805 9.08150 9.14068 9.22868 10.42488 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.004265 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.251839 B = 6564.236696 C = 6965.954064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.129 4.129 3 C -0.014 4.014 4 N -0.548 5.548 5 H 0.411 0.589 6 C 0.073 3.927 7 C -0.077 4.077 8 C 0.513 3.487 9 N -0.859 5.859 10 O -0.513 6.513 11 C -0.180 4.180 12 C 0.565 3.435 13 O -0.470 6.470 14 N -0.670 5.670 15 C 0.147 3.853 16 C -0.271 4.271 17 C -0.080 4.080 18 C -0.242 4.242 19 C 0.120 3.880 20 C -0.466 4.466 21 H 0.076 0.924 22 C 0.072 3.928 23 N -0.755 5.755 24 Si 0.900 3.100 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.264 1.264 28 C -0.158 4.158 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.167 0.833 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.399 0.601 36 H 0.402 0.598 37 H 0.393 0.607 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.282 0.718 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 13.169 6.391 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C -0.142 4.142 4 N -0.143 5.143 5 H 0.246 0.754 6 C -0.042 4.042 7 C -0.118 4.118 8 C 0.297 3.703 9 N -0.423 5.423 10 O -0.387 6.387 11 C -0.191 4.191 12 C 0.349 3.651 13 O -0.340 6.340 14 N -0.315 5.315 15 C 0.054 3.946 16 C -0.292 4.292 17 C -0.099 4.099 18 C -0.262 4.262 19 C 0.117 3.883 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.149 4.149 23 N -0.378 5.378 24 Si 0.725 3.275 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.188 1.188 28 C -0.179 4.179 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.184 0.816 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.227 0.773 36 H 0.233 0.767 37 H 0.227 0.773 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.018 13.363 4.876 17.993 hybrid contribution 0.373 0.152 -0.154 0.431 sum 11.391 13.515 4.722 18.294 Atomic orbital electron populations 1.20140 0.89653 1.02042 1.02109 1.20441 0.95208 0.90458 1.07476 1.21371 0.82189 0.98801 1.11836 1.41166 1.08017 1.05615 1.59495 0.75360 1.19096 0.93933 0.83119 1.08091 1.20182 0.94828 1.00976 0.95818 1.20404 0.80367 0.78318 0.91251 1.43793 1.29014 1.56794 1.12745 1.90843 1.49082 1.53057 1.45692 1.20198 0.92102 0.93099 1.13725 1.17575 0.78383 0.84871 0.84278 1.91042 1.46239 1.66204 1.30480 1.43481 1.65594 1.14258 1.08141 1.17601 0.96055 0.82652 0.98251 1.19982 1.09805 0.94844 1.04585 1.20256 0.97641 0.94381 0.97629 1.20941 1.05054 0.98441 1.01744 1.17482 0.89997 0.90239 0.90572 1.19514 1.16838 1.15643 0.97514 0.90579 1.25959 0.96292 0.93993 0.98686 1.69897 1.27425 1.20962 1.19495 0.86447 0.82347 0.79666 0.79032 1.19446 1.20429 1.18801 1.21380 0.99130 0.97298 1.00131 0.91619 0.91589 0.92059 0.81611 0.88035 0.86560 0.77323 0.76708 0.77346 0.89600 0.89398 0.89206 0.90703 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.35 36.00 0.37 -0.83 16 2 C -0.13 -2.01 6.36 -102.54 -0.65 -2.66 16 3 C -0.01 -0.16 11.82 -16.82 -0.20 -0.36 16 4 N -0.55 -6.05 5.90 -9.10 -0.05 -6.11 16 5 H 0.41 2.96 8.96 -40.82 -0.37 2.59 16 6 C 0.07 1.03 5.67 -81.88 -0.46 0.56 16 7 C -0.08 -0.87 6.01 -29.04 -0.17 -1.04 16 8 C 0.51 7.28 8.09 -10.99 -0.09 7.19 16 9 N -0.86 -8.40 8.87 31.22 0.28 -8.12 16 10 O -0.51 -10.20 16.87 5.55 0.09 -10.11 16 11 C -0.18 -3.20 6.05 -103.35 -0.63 -3.82 16 12 C 0.56 12.27 7.02 -12.61 -0.09 12.19 16 13 O -0.47 -12.79 14.87 5.24 0.08 -12.71 16 14 N -0.67 -13.57 5.33 -10.93 -0.06 -13.63 16 15 C 0.15 3.56 6.25 -83.78 -0.52 3.03 16 16 C -0.27 -6.12 9.97 -39.10 -0.39 -6.51 16 17 C -0.08 -1.85 10.02 -39.70 -0.40 -2.25 16 18 C -0.24 -6.21 9.79 -38.84 -0.38 -6.59 16 19 C 0.12 3.40 5.56 -106.85 -0.59 2.81 16 20 C -0.47 -13.12 9.05 -37.74 -0.34 -13.47 16 21 H 0.08 2.05 7.90 -52.48 -0.41 1.63 16 22 C 0.07 1.95 5.16 -17.35 -0.09 1.86 16 23 N -0.75 -21.74 10.95 55.55 0.61 -21.13 16 24 Si 0.90 20.16 29.59 -169.99 -5.03 15.13 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 28 C -0.16 -4.41 7.28 -38.68 -0.28 -4.70 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.17 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.12 1.30 8.05 -51.93 -0.42 0.88 16 35 H 0.40 2.40 8.83 -40.82 -0.36 2.04 16 36 H 0.40 3.79 8.93 -40.82 -0.36 3.43 16 37 H 0.39 6.45 8.80 -40.82 -0.36 6.09 16 38 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.28 7.69 8.30 -40.82 -0.34 7.36 16 42 H 0.14 4.05 4.63 -52.49 -0.24 3.81 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -39.05 367.35 -8.51 -47.56 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -5.04 Total: 18.16 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -4.92 Total: -14.59 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.77 Total: -48.99 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.81 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.05 -8.51 -47.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412974067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.878 kcal (2) G-P(sol) polarization free energy of solvation -39.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds