Wall clock time and date at job start Tue Mar 31 2020 15:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34489 * 126.83495 * 2 1 4 4 N 1.36447 * 108.86569 * 179.73963 * 3 2 1 5 5 H 0.96998 * 124.85097 * 179.97438 * 4 3 2 6 6 C 1.34668 * 110.29455 * 0.02562 * 4 3 2 7 7 C 1.50696 * 125.80155 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47480 * 264.97474 * 7 6 4 9 9 N 1.34770 * 120.00304 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99380 * 0.02562 * 8 7 6 11 11 C 1.36784 * 108.39669 * 359.97438 * 6 4 3 12 12 C 1.47233 * 126.94327 * 180.02562 * 11 6 4 13 13 O 1.21641 * 119.99485 * 269.99597 * 12 11 6 14 14 N 1.34777 * 120.00122 * 90.00186 * 12 11 6 15 15 C 1.39882 * 119.99510 * 174.88826 * 14 12 11 16 16 C 1.39309 * 119.94751 * 145.61977 * 15 14 12 17 17 C 1.38473 * 120.42945 * 180.02562 * 16 15 14 18 18 C 1.37688 * 120.32204 * 359.97438 * 17 16 15 19 19 C 1.40737 * 119.88794 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21091 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00082 * 25.23388 * 20 19 18 22 22 C 1.39931 * 120.00208 * 205.23533 * 20 19 18 23 23 N 1.30821 * 119.99952 * 16.70525 * 22 20 19 24 24 Si 1.86802 * 120.00035 * 196.70512 * 22 20 19 25 25 H 1.48506 * 109.46772 * 89.99941 * 24 22 20 26 26 H 1.48492 * 109.47288 * 209.99838 * 24 22 20 27 27 H 1.48505 * 109.47096 * 330.00364 * 24 22 20 28 28 C 1.38255 * 119.94958 * 325.33813 * 15 14 12 29 29 H 1.08998 * 109.47597 * 90.02285 * 1 2 3 30 30 H 1.09001 * 109.46921 * 210.02072 * 1 2 3 31 31 H 1.09004 * 109.47284 * 330.01745 * 1 2 3 32 32 H 1.08008 * 125.56253 * 359.73865 * 3 2 1 33 33 H 1.09009 * 109.47145 * 24.97550 * 7 6 4 34 34 H 1.09000 * 109.47216 * 144.96867 * 7 6 4 35 35 H 0.97004 * 120.00058 * 0.02562 * 9 8 7 36 36 H 0.97005 * 120.00131 * 179.97438 * 9 8 7 37 37 H 0.96993 * 119.99845 * 354.87776 * 14 12 11 38 38 H 1.08008 * 119.78380 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.84250 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.05413 * 180.02562 * 18 17 16 41 41 H 0.97000 * 120.00084 * 180.02562 * 23 22 20 42 42 H 1.07997 * 120.15956 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6555 0.0059 5 1 4.3839 1.2416 0.0067 6 6 3.6657 -0.6901 0.0092 7 6 4.9227 -1.5213 0.0164 8 6 5.2791 -1.9055 -1.3966 9 7 6.3737 -2.6545 -1.6356 10 8 4.5813 -1.5398 -2.3187 11 6 2.3864 -1.1741 0.0060 12 6 1.9751 -2.5878 0.0085 13 8 1.8088 -3.1746 -1.0440 14 7 1.7827 -3.2317 1.1768 15 6 1.2895 -4.5407 1.1809 16 6 1.7201 -5.4431 2.1509 17 6 1.2388 -6.7414 2.1640 18 6 0.3280 -7.1546 1.2177 19 6 -0.1171 -6.2538 0.2322 20 6 -1.0528 -6.6708 -0.7426 21 1 -1.7254 -7.4888 -0.5304 22 6 -1.1073 -6.0237 -1.9821 23 7 -0.1100 -5.2723 -2.3721 24 14 -2.6042 -6.2329 -3.0798 25 1 -3.6006 -5.1777 -2.7645 26 1 -2.1948 -6.1177 -4.5025 27 1 -3.2075 -7.5694 -2.8449 28 6 0.3709 -4.9351 0.2258 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5136 32 1 1.9866 2.1059 -0.0040 33 1 5.7378 -0.9437 0.4524 34 1 4.7591 -2.4223 0.6076 35 1 6.9320 -2.9466 -0.8981 36 1 6.6029 -2.9020 -2.5451 37 1 1.9864 -2.7875 2.0146 38 1 2.4347 -5.1282 2.8970 39 1 1.5794 -7.4332 2.9200 40 1 -0.0449 -8.1682 1.2322 41 1 -0.1480 -4.8235 -3.2311 42 1 0.0327 -4.2349 -0.5235 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412974067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:01 Heat of formation + Delta-G solvation = -39.834951 kcal Electronic energy + Delta-G solvation = -27735.172332 eV Core-core repulsion = 23872.070234 eV Total energy + Delta-G solvation = -3863.102099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32999 -40.65859 -40.18532 -38.67941 -35.94548 -34.86999 -34.72747 -33.74479 -32.62376 -31.41353 -30.28024 -28.92268 -27.17009 -26.85149 -24.45473 -22.93375 -22.21723 -21.74217 -20.36728 -20.24786 -19.33091 -18.86116 -18.00519 -17.61122 -17.51084 -17.19793 -16.61021 -16.46962 -16.12890 -15.65310 -15.38939 -14.99043 -14.81761 -14.59204 -14.49161 -14.21999 -14.04698 -13.91506 -13.57289 -13.44735 -13.37189 -13.03251 -12.97746 -12.84425 -12.60842 -12.21683 -12.16378 -11.85883 -11.51199 -11.15261 -11.11203 -10.77823 -10.66350 -10.52781 -9.45925 -9.26145 -9.03669 -8.72773 -8.40759 -6.29071 0.90849 1.09747 1.14263 1.33251 1.48206 1.49398 1.63328 1.65503 1.94035 2.21001 2.23182 2.65661 2.74940 2.83336 3.56287 3.80310 4.01166 4.14949 4.21496 4.26675 4.39519 4.53558 4.54961 4.67626 4.75253 4.82083 4.93808 5.01643 5.10514 5.16103 5.27045 5.32014 5.37212 5.46047 5.82804 5.87127 5.92424 5.97106 6.03075 6.05868 6.21421 6.44516 6.47584 6.71919 6.76112 6.85855 7.01371 7.11272 7.35829 7.57620 8.39706 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.004265 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.251839 B = 6564.236696 C = 6965.954064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.170 4.170 3 C 0.016 3.984 4 N -0.527 5.527 5 H 0.434 0.566 6 C 0.084 3.916 7 C -0.076 4.076 8 C 0.505 3.495 9 N -0.838 5.838 10 O -0.582 6.582 11 C -0.231 4.231 12 C 0.570 3.430 13 O -0.535 6.535 14 N -0.655 5.655 15 C 0.144 3.856 16 C -0.256 4.256 17 C -0.077 4.077 18 C -0.257 4.257 19 C 0.085 3.915 20 C -0.504 4.504 21 H 0.077 0.923 22 C 0.026 3.974 23 N -0.797 5.797 24 Si 0.975 3.025 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.250 1.250 28 C -0.190 4.190 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.098 0.902 32 H 0.212 0.788 33 H 0.160 0.840 34 H 0.118 0.882 35 H 0.420 0.580 36 H 0.404 0.596 37 H 0.414 0.586 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.097 0.903 41 H 0.277 0.723 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.742 14.912 8.830 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.177 4.177 3 C -0.114 4.114 4 N -0.123 5.123 5 H 0.274 0.726 6 C -0.033 4.033 7 C -0.116 4.116 8 C 0.290 3.710 9 N -0.403 5.403 10 O -0.461 6.461 11 C -0.241 4.241 12 C 0.357 3.643 13 O -0.410 6.410 14 N -0.301 5.301 15 C 0.051 3.949 16 C -0.277 4.277 17 C -0.096 4.096 18 C -0.277 4.277 19 C 0.082 3.918 20 C -0.533 4.533 21 H 0.095 0.905 22 C -0.191 4.191 23 N -0.421 5.421 24 Si 0.796 3.204 25 H -0.190 1.190 26 H -0.199 1.199 27 H -0.173 1.173 28 C -0.211 4.211 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.228 0.772 33 H 0.178 0.822 34 H 0.136 0.864 35 H 0.251 0.749 36 H 0.235 0.765 37 H 0.251 0.749 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.302 15.112 7.413 21.454 hybrid contribution -0.123 -0.358 -0.734 0.826 sum 13.179 14.754 6.678 20.880 Atomic orbital electron populations 1.20078 0.90070 1.02319 1.00982 1.20648 0.95562 0.91034 1.10410 1.21920 0.81698 0.99654 1.08113 1.41175 1.08840 1.04841 1.57465 0.72560 1.19314 0.93582 0.84490 1.05941 1.20342 0.95520 1.01599 0.94117 1.20977 0.80320 0.77953 0.91792 1.43661 1.27873 1.54953 1.13827 1.90823 1.51448 1.56033 1.47813 1.20051 0.94682 0.91164 1.18238 1.18223 0.76516 0.86283 0.83313 1.91015 1.49062 1.68136 1.32747 1.43381 1.64630 1.13001 1.09116 1.17808 0.94903 0.84674 0.97530 1.20479 1.09009 0.94117 1.04057 1.20726 0.96051 0.95357 0.97428 1.21179 1.05990 0.98544 1.02029 1.17883 0.90972 0.91079 0.91843 1.19775 1.18085 1.16870 0.98591 0.90489 1.26849 0.99086 0.93193 0.99925 1.70061 1.29696 1.22590 1.19719 0.85319 0.78142 0.80125 0.76811 1.18981 1.19910 1.17338 1.21248 1.01538 0.97118 1.01228 0.93528 0.94679 0.88307 0.77176 0.82224 0.86366 0.74868 0.76482 0.74896 0.85124 0.85050 0.88451 0.91265 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.34 10.35 71.23 0.74 -1.60 16 2 C -0.17 -5.22 6.36 -18.51 -0.12 -5.34 16 3 C 0.02 0.32 11.82 83.12 0.98 1.30 16 4 N -0.53 -9.78 5.90 -182.70 -1.08 -10.86 16 5 H 0.43 4.15 8.96 -92.71 -0.83 3.32 16 6 C 0.08 2.21 5.67 41.78 0.24 2.45 16 7 C -0.08 -1.49 6.01 29.10 0.17 -1.32 16 8 C 0.50 13.83 8.09 87.66 0.71 14.54 16 9 N -0.84 -15.10 8.87 -173.54 -1.54 -16.64 16 10 O -0.58 -23.69 16.87 -3.04 -0.05 -23.74 16 11 C -0.23 -8.24 6.05 -19.04 -0.12 -8.36 16 12 C 0.57 25.88 7.02 86.61 0.61 26.49 16 13 O -0.54 -31.36 14.87 -4.16 -0.06 -31.42 16 14 N -0.66 -26.92 5.33 -306.73 -1.64 -28.56 16 15 C 0.14 7.11 6.25 38.12 0.24 7.34 16 16 C -0.26 -11.00 9.97 22.58 0.23 -10.77 16 17 C -0.08 -3.40 10.02 22.20 0.22 -3.18 16 18 C -0.26 -13.36 9.79 22.75 0.22 -13.14 16 19 C 0.09 5.05 5.56 -21.31 -0.12 4.93 16 20 C -0.50 -30.03 9.05 23.46 0.21 -29.82 16 21 H 0.08 4.36 7.90 -2.91 -0.02 4.34 16 22 C 0.03 1.49 5.16 85.25 0.44 1.93 16 23 N -0.80 -49.45 10.95 21.82 0.24 -49.21 16 24 Si 0.98 43.70 29.59 68.60 2.03 45.73 16 25 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 28 C -0.19 -11.21 7.28 22.85 0.17 -11.04 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 2.11 8.14 -2.38 -0.02 2.10 16 32 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.16 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.12 2.35 8.05 -2.39 -0.02 2.33 16 35 H 0.42 3.90 8.83 -92.70 -0.82 3.08 16 36 H 0.40 7.30 8.93 -92.70 -0.83 6.48 16 37 H 0.41 13.18 8.80 -92.71 -0.82 12.37 16 38 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 41 H 0.28 16.44 8.30 -92.71 -0.77 15.67 16 42 H 0.10 6.72 4.63 -2.91 -0.01 6.71 16 Total: -1.00 -96.21 367.35 0.56 -95.65 By element: Atomic # 1 Polarization: 46.77 SS G_CDS: -2.17 Total: 44.60 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.82 Total: -25.57 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -4.01 Total: -105.26 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.11 Total: -55.16 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -96.21 0.56 -95.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412974067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.818 kcal (2) G-P(sol) polarization free energy of solvation -96.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds