Wall clock time and date at job start Tue Mar 31 2020 14:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38086 * 120.35625 * 2 1 4 4 N 1.31935 * 120.83390 * 179.97438 * 3 2 1 5 5 C 1.32279 * 121.64802 * 0.02562 * 4 3 2 6 6 O 1.35676 * 119.68442 * 179.97438 * 5 4 3 7 7 C 1.38881 * 120.62884 * 359.97438 * 5 4 3 8 8 C 1.50700 * 120.44044 * 180.02562 * 7 5 4 9 9 N 1.46506 * 109.46941 * 285.00317 * 8 7 5 10 10 C 1.34770 * 119.99680 * 179.73007 * 9 8 7 11 11 O 1.21593 * 120.00320 * 0.26571 * 10 9 8 12 12 N 1.34780 * 120.00185 * 180.27688 * 10 9 8 13 13 C 1.39953 * 120.00459 * 174.84715 * 12 10 9 14 14 C 1.39287 * 119.95027 * 145.76083 * 13 12 10 15 15 C 1.38489 * 120.42607 * 180.02562 * 14 13 12 16 16 C 1.37673 * 120.32678 * 359.97438 * 15 14 13 17 17 C 1.40742 * 119.88634 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.21791 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00232 * 205.17876 * 18 17 16 20 20 C 1.39937 * 119.99858 * 25.17091 * 18 17 16 21 21 N 1.30831 * 119.99439 * 16.79646 * 20 18 17 22 22 Si 1.86791 * 120.00214 * 196.79757 * 20 18 17 23 23 H 1.48501 * 109.47256 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47208 * 119.99975 * 22 20 18 25 25 H 1.48494 * 109.47467 * 240.00102 * 22 20 18 26 26 C 1.38243 * 119.94207 * 325.48912 * 13 12 10 27 27 C 1.38421 * 119.11245 * 0.27705 * 7 5 4 28 28 H 1.09000 * 109.47514 * 89.99787 * 1 2 3 29 29 H 1.08997 * 109.47149 * 209.99529 * 1 2 3 30 30 H 1.09002 * 109.46951 * 329.99526 * 1 2 3 31 31 H 1.07996 * 119.58482 * 0.02562 * 3 2 1 32 32 H 0.96700 * 113.99548 * 270.01982 * 6 5 4 33 33 H 1.08999 * 109.47173 * 165.00494 * 8 7 5 34 34 H 1.08994 * 109.47146 * 45.00068 * 8 7 5 35 35 H 0.96994 * 120.00369 * 359.97438 * 9 8 7 36 36 H 0.97001 * 119.99441 * 354.84144 * 12 10 9 37 37 H 1.08000 * 119.78340 * 0.02562 * 14 13 12 38 38 H 1.08002 * 119.83361 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.06212 * 179.97438 * 16 15 14 40 40 H 0.97001 * 119.99557 * 179.97438 * 21 20 18 41 41 H 1.07991 * 120.16063 * 0.02562 * 26 13 12 42 42 H 1.08001 * 120.75074 * 179.72173 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1915 0.0000 4 7 3.5242 1.2025 0.0005 5 6 4.2276 0.0823 0.0005 6 8 5.5831 0.1401 0.0005 7 6 3.5918 -1.1524 0.0005 8 6 4.3974 -2.4261 0.0012 9 7 4.9612 -2.6479 -1.3328 10 6 5.7279 -3.7308 -1.5686 11 8 5.9478 -4.5263 -0.6757 12 7 6.2512 -3.9321 -2.7943 13 6 7.1339 -4.9960 -3.0124 14 6 7.1326 -5.6610 -4.2362 15 6 8.0014 -6.7154 -4.4624 16 6 8.8771 -7.1178 -3.4792 17 6 8.8899 -6.4554 -2.2375 18 6 9.7860 -6.8632 -1.2226 19 1 9.5520 -6.6702 -0.1861 20 6 10.9760 -7.5170 -1.5612 21 7 11.4241 -7.4652 -2.7892 22 14 11.9245 -8.4636 -0.2599 23 1 11.2112 -8.3694 1.0392 24 1 12.0306 -9.8889 -0.6634 25 1 13.2854 -7.8859 -0.1209 26 6 8.0096 -5.3816 -2.0146 27 6 2.2083 -1.1975 -0.0053 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6639 2.1263 0.0004 32 1 5.9760 0.1571 -0.8829 33 1 3.7526 -3.2637 0.2670 34 1 5.2054 -2.3445 0.7281 35 1 4.7855 -2.0136 -2.0452 36 1 6.0159 -3.3395 -3.5253 37 1 6.4495 -5.3523 -5.0138 38 1 7.9926 -7.2240 -5.4152 39 1 9.5526 -7.9409 -3.6601 40 1 12.2492 -7.9181 -3.0239 41 1 8.0141 -4.8641 -1.0668 42 1 1.6867 -2.1432 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413569727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:18 Heat of formation + Delta-G solvation = -12.668271 kcal Electronic energy + Delta-G solvation = -26133.546381 eV Core-core repulsion = 22271.622318 eV Total energy + Delta-G solvation = -3861.924063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07714 -39.83909 -37.57451 -37.33690 -35.27283 -34.34117 -33.51701 -33.04089 -31.96064 -29.77740 -28.25740 -27.17531 -26.30952 -25.23746 -23.60204 -22.02341 -21.37630 -20.82804 -20.07993 -19.07590 -18.10179 -17.69268 -17.45874 -16.35324 -15.95636 -15.45598 -14.99388 -14.90074 -14.65651 -14.57522 -14.34164 -14.11427 -13.78953 -13.54735 -13.24755 -12.95957 -12.91293 -12.78236 -12.70074 -12.10941 -12.03845 -11.90121 -11.61287 -11.16569 -11.08691 -10.88700 -10.42120 -10.29024 -10.11008 -9.78820 -9.68224 -9.49046 -9.11823 -9.09922 -8.98205 -8.92110 -7.40502 -6.86272 -6.66927 -4.29262 0.50225 0.77422 2.73646 2.85597 2.99012 3.12867 3.19840 3.21849 3.24606 3.43889 3.71387 4.00338 4.12603 4.30578 4.43143 4.52450 4.57381 4.69183 4.74589 4.99030 5.12440 5.19002 5.35861 5.48085 5.66455 5.75375 5.76325 5.81705 6.10778 6.26467 6.42425 6.45689 6.76394 6.81080 7.08196 7.13236 7.17152 7.27838 7.36712 7.53417 7.71796 7.85104 8.03087 8.15503 8.27970 8.43912 8.70829 8.92703 9.01265 9.06044 10.25628 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002337 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.843718 B =11979.932081 C =12577.564309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.151 4.151 3 C 0.126 3.874 4 N -0.501 5.501 5 C 0.322 3.678 6 O -0.474 6.474 7 C -0.164 4.164 8 C 0.190 3.810 9 N -0.749 5.749 10 C 0.700 3.300 11 O -0.562 6.562 12 N -0.681 5.681 13 C 0.169 3.831 14 C -0.263 4.263 15 C -0.092 4.092 16 C -0.173 4.173 17 C 0.120 3.880 18 C -0.457 4.457 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.907 3.093 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.209 4.209 27 C -0.044 4.044 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.402 0.598 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.389 0.611 36 H 0.393 0.607 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.279 0.721 41 H 0.107 0.893 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.200 14.374 1.125 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.153 4.153 3 C -0.031 4.031 4 N -0.219 5.219 5 C 0.142 3.858 6 O -0.281 6.281 7 C -0.168 4.168 8 C 0.066 3.934 9 N -0.406 5.406 10 C 0.400 3.600 11 O -0.437 6.437 12 N -0.327 5.327 13 C 0.076 3.924 14 C -0.285 4.285 15 C -0.111 4.111 16 C -0.193 4.193 17 C 0.116 3.884 18 C -0.486 4.486 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.422 5.422 22 Si 0.732 3.268 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.201 1.201 26 C -0.231 4.231 27 C -0.070 4.070 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.177 0.823 32 H 0.260 0.740 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.222 0.778 36 H 0.226 0.774 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.327 14.332 2.471 22.622 hybrid contribution -0.019 -0.453 -0.736 0.864 sum -17.346 13.879 1.735 22.283 Atomic orbital electron populations 1.20711 0.89688 1.03390 1.02806 1.20961 0.97982 0.93848 1.02538 1.22480 0.88272 0.97813 0.94571 1.67243 1.08964 1.31665 1.13982 1.19076 0.84728 0.87257 0.94696 1.84792 1.13774 1.95647 1.33926 1.21010 0.94775 0.95672 1.05363 1.19801 0.96614 0.92283 0.84739 1.45092 1.56182 1.26589 1.12731 1.15920 0.78797 0.81674 0.83611 1.90997 1.63354 1.45508 1.43873 1.42572 1.48169 1.32288 1.09652 1.17215 0.90502 0.88909 0.95733 1.19998 1.07563 1.03907 0.97050 1.20440 0.96370 0.96536 0.97777 1.21336 1.00927 1.02411 0.94625 1.17502 0.89918 0.88444 0.92490 1.19613 1.02077 1.32233 0.94718 0.90331 1.25904 0.97567 0.94628 0.96102 1.69841 1.19195 1.33767 1.19365 0.86275 0.79159 0.79598 0.81786 1.18358 1.19753 1.20061 1.21007 1.00980 1.01821 0.99263 1.21448 0.92484 0.98808 0.94272 0.90739 0.91063 0.91008 0.82272 0.74006 0.90527 0.89679 0.77792 0.77361 0.89429 0.89093 0.86349 0.91057 0.87503 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.03 36.01 0.36 -0.08 16 2 C -0.15 -1.03 5.90 -104.48 -0.62 -1.65 16 3 C 0.13 1.00 10.85 -17.56 -0.19 0.81 16 4 N -0.50 -5.41 10.39 -13.33 -0.14 -5.55 16 5 C 0.32 3.47 7.72 -17.12 -0.13 3.33 16 6 O -0.47 -5.20 12.91 -18.73 -0.24 -5.44 16 7 C -0.16 -1.59 5.28 -104.32 -0.55 -2.14 16 8 C 0.19 2.21 5.43 -5.19 -0.03 2.18 16 9 N -0.75 -9.07 5.55 -66.41 -0.37 -9.44 16 10 C 0.70 12.39 8.29 -86.92 -0.72 11.67 16 11 O -0.56 -12.82 14.10 5.28 0.07 -12.74 16 12 N -0.68 -11.96 5.34 -14.27 -0.08 -12.03 16 13 C 0.17 3.83 6.25 -83.76 -0.52 3.31 16 14 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 15 C -0.09 -2.17 10.01 -39.70 -0.40 -2.56 16 16 C -0.17 -4.59 8.69 -38.84 -0.34 -4.93 16 17 C 0.12 3.33 5.57 -106.85 -0.59 2.73 16 18 C -0.46 -12.71 9.05 -37.74 -0.34 -13.05 16 19 H 0.08 2.17 7.90 -52.49 -0.41 1.76 16 20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.80 -20.94 10.94 55.55 0.61 -20.33 16 22 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 C -0.21 -5.49 8.39 -38.68 -0.32 -5.81 16 27 C -0.04 -0.34 9.49 -39.31 -0.37 -0.72 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 30 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 31 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.40 2.85 9.06 45.56 0.41 3.27 16 33 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 34 H 0.09 1.16 8.02 -51.93 -0.42 0.74 16 35 H 0.39 3.49 8.48 -40.82 -0.35 3.14 16 36 H 0.39 5.23 8.84 -40.82 -0.36 4.87 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.12 3.22 6.17 -52.49 -0.32 2.89 16 40 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 41 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 42 H 0.14 0.87 8.05 -52.49 -0.42 0.45 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.50 364.01 -9.23 -43.73 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.29 Total: 13.25 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -5.25 Total: -11.26 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.02 Total: -47.35 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.17 Total: -18.18 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.50 -9.23 -43.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413569727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.060 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds