Wall clock time and date at job start Tue Mar 31 2020 14:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38086 * 120.35625 * 2 1 4 4 N 1.31935 * 120.83390 * 179.97438 * 3 2 1 5 5 C 1.32279 * 121.64802 * 0.02562 * 4 3 2 6 6 O 1.35676 * 119.68442 * 179.97438 * 5 4 3 7 7 C 1.38881 * 120.62884 * 359.97438 * 5 4 3 8 8 C 1.50700 * 120.44044 * 180.02562 * 7 5 4 9 9 N 1.46506 * 109.46941 * 285.00317 * 8 7 5 10 10 C 1.34770 * 119.99680 * 179.73007 * 9 8 7 11 11 O 1.21593 * 120.00320 * 0.26571 * 10 9 8 12 12 N 1.34780 * 120.00185 * 180.27688 * 10 9 8 13 13 C 1.39953 * 120.00459 * 174.84715 * 12 10 9 14 14 C 1.39287 * 119.95027 * 145.76083 * 13 12 10 15 15 C 1.38489 * 120.42607 * 180.02562 * 14 13 12 16 16 C 1.37673 * 120.32678 * 359.97438 * 15 14 13 17 17 C 1.40742 * 119.88634 * 0.02562 * 16 15 14 18 18 C 1.41402 * 120.21791 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00232 * 205.17876 * 18 17 16 20 20 C 1.39937 * 119.99858 * 25.17091 * 18 17 16 21 21 N 1.30831 * 119.99439 * 16.79646 * 20 18 17 22 22 Si 1.86791 * 120.00214 * 196.79757 * 20 18 17 23 23 H 1.48501 * 109.47256 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47208 * 119.99975 * 22 20 18 25 25 H 1.48494 * 109.47467 * 240.00102 * 22 20 18 26 26 C 1.38243 * 119.94207 * 325.48912 * 13 12 10 27 27 C 1.38421 * 119.11245 * 0.27705 * 7 5 4 28 28 H 1.09000 * 109.47514 * 89.99787 * 1 2 3 29 29 H 1.08997 * 109.47149 * 209.99529 * 1 2 3 30 30 H 1.09002 * 109.46951 * 329.99526 * 1 2 3 31 31 H 1.07996 * 119.58482 * 0.02562 * 3 2 1 32 32 H 0.96700 * 113.99548 * 270.01982 * 6 5 4 33 33 H 1.08999 * 109.47173 * 165.00494 * 8 7 5 34 34 H 1.08994 * 109.47146 * 45.00068 * 8 7 5 35 35 H 0.96994 * 120.00369 * 359.97438 * 9 8 7 36 36 H 0.97001 * 119.99441 * 354.84144 * 12 10 9 37 37 H 1.08000 * 119.78340 * 0.02562 * 14 13 12 38 38 H 1.08002 * 119.83361 * 180.02562 * 15 14 13 39 39 H 1.08002 * 120.06212 * 179.97438 * 16 15 14 40 40 H 0.97001 * 119.99557 * 179.97438 * 21 20 18 41 41 H 1.07991 * 120.16063 * 0.02562 * 26 13 12 42 42 H 1.08001 * 120.75074 * 179.72173 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1915 0.0000 4 7 3.5242 1.2025 0.0005 5 6 4.2276 0.0823 0.0005 6 8 5.5831 0.1401 0.0005 7 6 3.5918 -1.1524 0.0005 8 6 4.3974 -2.4261 0.0012 9 7 4.9612 -2.6479 -1.3328 10 6 5.7279 -3.7308 -1.5686 11 8 5.9478 -4.5263 -0.6757 12 7 6.2512 -3.9321 -2.7943 13 6 7.1339 -4.9960 -3.0124 14 6 7.1326 -5.6610 -4.2362 15 6 8.0014 -6.7154 -4.4624 16 6 8.8771 -7.1178 -3.4792 17 6 8.8899 -6.4554 -2.2375 18 6 9.7860 -6.8632 -1.2226 19 1 9.5520 -6.6702 -0.1861 20 6 10.9760 -7.5170 -1.5612 21 7 11.4241 -7.4652 -2.7892 22 14 11.9245 -8.4636 -0.2599 23 1 11.2112 -8.3694 1.0392 24 1 12.0306 -9.8889 -0.6634 25 1 13.2854 -7.8859 -0.1209 26 6 8.0096 -5.3816 -2.0146 27 6 2.2083 -1.1975 -0.0053 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6639 2.1263 0.0004 32 1 5.9760 0.1571 -0.8829 33 1 3.7526 -3.2637 0.2670 34 1 5.2054 -2.3445 0.7281 35 1 4.7855 -2.0136 -2.0452 36 1 6.0159 -3.3395 -3.5253 37 1 6.4495 -5.3523 -5.0138 38 1 7.9926 -7.2240 -5.4152 39 1 9.5526 -7.9409 -3.6601 40 1 12.2492 -7.9181 -3.0239 41 1 8.0141 -4.8641 -1.0668 42 1 1.6867 -2.1432 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413569727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:17 Heat of formation + Delta-G solvation = -39.867143 kcal Electronic energy + Delta-G solvation = -26134.725813 eV Core-core repulsion = 22271.622318 eV Total energy + Delta-G solvation = -3863.103495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87125 -41.25349 -39.16103 -38.26516 -36.53277 -36.01968 -34.85032 -34.13060 -32.88192 -31.72950 -29.90041 -27.70713 -27.42665 -27.13402 -24.32825 -23.45205 -22.72857 -22.25863 -21.68633 -19.82876 -19.61499 -19.35632 -18.21545 -17.58655 -17.17524 -16.99618 -16.52083 -16.32518 -16.05217 -15.79894 -15.40065 -15.05597 -14.82598 -14.66444 -14.50091 -14.19898 -14.10343 -13.85121 -13.49864 -13.43012 -13.27380 -13.00663 -12.89887 -12.78407 -12.64112 -12.57932 -12.16930 -12.00855 -11.55921 -11.29313 -11.02163 -10.85499 -10.74179 -10.49012 -10.19427 -9.69194 -9.37253 -8.71666 -8.57463 -6.35345 -0.17716 0.12689 0.93818 1.04514 1.36413 1.48211 1.51862 1.70059 2.17841 2.22096 2.48224 2.73596 2.75562 3.30463 3.39746 3.69628 3.76263 3.84847 3.95394 4.19866 4.35902 4.47793 4.49314 4.65676 4.66270 4.84729 4.88832 5.03536 5.06202 5.11812 5.14127 5.18290 5.20140 5.27181 5.31570 5.35397 5.57791 5.72334 5.84084 6.06671 6.13064 6.18053 6.38264 6.50988 6.70775 6.87250 6.96009 7.02552 7.07553 7.58061 8.34422 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002337 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.843718 B =11979.932081 C =12577.564309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.141 4.141 3 C 0.122 3.878 4 N -0.528 5.528 5 C 0.305 3.695 6 O -0.494 6.494 7 C -0.168 4.168 8 C 0.196 3.804 9 N -0.719 5.719 10 C 0.698 3.302 11 O -0.616 6.616 12 N -0.668 5.668 13 C 0.178 3.822 14 C -0.250 4.250 15 C -0.090 4.090 16 C -0.199 4.199 17 C 0.088 3.912 18 C -0.502 4.502 19 H 0.060 0.940 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.980 3.020 23 H -0.267 1.267 24 H -0.258 1.258 25 H -0.262 1.262 26 C -0.237 4.237 27 C -0.044 4.044 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.187 0.813 32 H 0.413 0.587 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.418 0.582 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.289 0.711 41 H 0.082 0.918 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.622 15.350 -0.197 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C -0.035 4.035 4 N -0.246 5.246 5 C 0.126 3.874 6 O -0.303 6.303 7 C -0.172 4.172 8 C 0.072 3.928 9 N -0.377 5.377 10 C 0.398 3.602 11 O -0.495 6.495 12 N -0.316 5.316 13 C 0.084 3.916 14 C -0.272 4.272 15 C -0.109 4.109 16 C -0.219 4.219 17 C 0.085 3.915 18 C -0.531 4.531 19 H 0.078 0.922 20 C -0.177 4.177 21 N -0.448 5.448 22 Si 0.801 3.199 23 H -0.191 1.191 24 H -0.182 1.182 25 H -0.186 1.186 26 C -0.259 4.259 27 C -0.069 4.069 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.204 0.796 32 H 0.273 0.727 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.256 0.744 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.797 15.390 1.092 25.099 hybrid contribution 0.529 -0.588 -0.389 0.881 sum -19.268 14.802 0.703 24.308 Atomic orbital electron populations 1.20797 0.87250 1.04519 1.03866 1.21269 0.99558 0.92898 1.00539 1.23042 0.87528 0.99523 0.93429 1.67255 1.10443 1.31822 1.15114 1.19182 0.84568 0.87767 0.95845 1.84759 1.14536 1.95751 1.35269 1.20748 0.95376 0.93996 1.07094 1.19715 0.96010 0.93606 0.83509 1.44798 1.54213 1.24930 1.13729 1.16107 0.78960 0.82237 0.82848 1.90977 1.65274 1.47807 1.45466 1.42293 1.47109 1.31572 1.10670 1.17252 0.89815 0.89521 0.95018 1.20440 1.06976 1.02330 0.97410 1.20828 0.95191 0.96688 0.98201 1.21297 1.02467 1.02890 0.95271 1.17840 0.90758 0.89405 0.93454 1.19738 1.03999 1.35326 0.94071 0.92154 1.26683 0.97766 0.94778 0.98505 1.69863 1.19915 1.34131 1.20883 0.85196 0.77790 0.78570 0.78341 1.19088 1.18223 1.18633 1.20951 1.02895 1.02444 0.99568 1.21716 0.91640 1.00220 0.93369 0.89533 0.90350 0.89560 0.79597 0.72714 0.90406 0.92212 0.75424 0.74435 0.84928 0.85816 0.87813 0.90032 0.89962 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.03 71.24 0.71 0.25 16 2 C -0.14 -1.52 5.90 -19.77 -0.12 -1.64 16 3 C 0.12 1.65 10.85 84.64 0.92 2.57 16 4 N -0.53 -10.84 10.39 -308.94 -3.21 -14.05 16 5 C 0.30 6.45 7.72 84.78 0.65 7.10 16 6 O -0.49 -11.07 12.91 -89.94 -1.16 -12.23 16 7 C -0.17 -3.10 5.28 -19.67 -0.10 -3.20 16 8 C 0.20 4.56 5.43 85.63 0.47 5.02 16 9 N -0.72 -16.89 5.55 -482.29 -2.68 -19.57 16 10 C 0.70 24.70 8.29 179.06 1.48 26.18 16 11 O -0.62 -29.19 14.10 -4.01 -0.06 -29.25 16 12 N -0.67 -22.60 5.34 -317.32 -1.70 -24.30 16 13 C 0.18 8.01 6.25 38.10 0.24 8.25 16 14 C -0.25 -10.42 9.97 22.58 0.23 -10.20 16 15 C -0.09 -4.13 10.01 22.20 0.22 -3.90 16 16 C -0.20 -10.84 8.69 22.75 0.20 -10.64 16 17 C 0.09 5.17 5.57 -21.31 -0.12 5.05 16 18 C -0.50 -29.71 9.05 23.46 0.21 -29.50 16 19 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 20 C 0.04 2.00 5.16 85.25 0.44 2.44 16 21 N -0.82 -44.42 10.94 21.83 0.24 -44.19 16 22 Si 0.98 40.88 29.59 68.60 2.03 42.91 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 26 C -0.24 -12.99 8.39 22.85 0.19 -12.80 16 27 C -0.04 -0.58 9.49 22.44 0.21 -0.37 16 28 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.08 0.28 8.10 -2.39 -0.02 0.26 16 30 H 0.09 0.17 8.09 -2.39 -0.02 0.15 16 31 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.41 6.01 9.06 -74.06 -0.67 5.33 16 33 H 0.08 1.81 8.00 -2.39 -0.02 1.79 16 34 H 0.06 1.72 8.02 -2.39 -0.02 1.70 16 35 H 0.41 6.55 8.48 -92.71 -0.79 5.76 16 36 H 0.42 9.89 8.84 -92.71 -0.82 9.07 16 37 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.10 5.84 6.17 -2.91 -0.02 5.83 16 40 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 41 H 0.08 4.83 6.48 -2.92 -0.02 4.81 16 42 H 0.16 1.51 8.05 -2.91 -0.02 1.49 16 Total: -1.00 -80.15 364.01 -1.87 -82.02 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -1.18 Total: 34.04 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.84 Total: -15.39 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -7.34 Total: -102.10 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.22 Total: -41.48 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -80.15 -1.87 -82.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413569727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.151 kcal (2) G-P(sol) polarization free energy of solvation -80.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds