Wall clock time and date at job start Tue Mar 31 2020 15:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35315 * 126.12260 * 2 1 4 4 C 1.50696 * 126.04395 * 0.02562 * 3 2 1 5 5 H 1.08996 * 109.47354 * 39.71638 * 4 3 2 6 6 C 1.53000 * 109.46937 * 279.71367 * 4 3 2 7 7 N 1.46500 * 109.47043 * 159.71632 * 4 3 2 8 8 S 1.65606 * 119.99888 * 214.99694 * 7 4 3 9 9 O 1.42100 * 104.27520 * 308.93105 * 8 7 4 10 10 O 1.42100 * 104.27577 * 181.07389 * 8 7 4 11 11 C 1.81401 * 104.44715 * 65.00353 * 8 7 4 12 12 C 1.52996 * 109.47027 * 181.18484 * 11 8 7 13 13 C 1.50701 * 115.54892 * 294.69442 * 12 11 8 14 14 H 1.07994 * 120.00173 * 95.19363 * 13 12 11 15 15 C 1.37880 * 119.99757 * 274.91393 * 13 12 11 16 16 N 1.31509 * 120.00227 * 6.46511 * 15 13 12 17 17 Si 1.86800 * 119.99808 * 186.46824 * 15 13 12 18 18 H 1.48498 * 109.47151 * 60.00011 * 17 15 13 19 19 H 1.48502 * 109.47155 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47136 * 299.99691 * 17 15 13 21 21 C 1.53001 * 117.50066 * 80.36300 * 12 11 8 22 22 C 1.53000 * 117.49860 * 149.02420 * 12 11 8 23 23 C 1.39878 * 107.91584 * 179.75813 * 3 2 1 24 24 N 1.30837 * 108.19911 * 0.23829 * 23 3 2 25 25 N 1.34947 * 126.12670 * 180.17401 * 2 1 3 26 26 C 1.46498 * 126.03798 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47164 * 90.00407 * 1 2 3 28 28 H 1.08995 * 109.47192 * 210.00222 * 1 2 3 29 29 H 1.09002 * 109.47362 * 330.00224 * 1 2 3 30 30 H 1.08999 * 109.47241 * 60.00604 * 6 4 3 31 31 H 1.09000 * 109.47175 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47457 * 299.99846 * 6 4 3 33 33 H 0.97003 * 120.00292 * 35.00412 * 7 4 3 34 34 H 1.08995 * 109.47318 * 61.17902 * 11 8 7 35 35 H 1.09006 * 109.47104 * 301.18102 * 11 8 7 36 36 H 0.97000 * 120.00773 * 185.06836 * 16 15 13 37 37 H 1.09004 * 117.49962 * 215.00396 * 21 12 11 38 38 H 1.09002 * 117.49965 * 0.02562 * 21 12 11 39 39 H 1.08994 * 117.50179 * 359.97351 * 22 12 11 40 40 H 1.09005 * 117.49860 * 144.97880 * 22 12 11 41 41 H 1.07994 * 125.89701 * 180.26203 * 23 3 2 42 42 H 1.08995 * 109.47333 * 270.26158 * 26 25 2 43 43 H 1.08998 * 109.46896 * 30.26398 * 26 25 2 44 44 H 1.08999 * 109.47307 * 150.25764 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 1 0.9797 2.6312 0.6575 6 6 1.4549 2.9389 -1.4210 7 7 2.9272 3.3891 0.4792 8 16 2.5797 4.7304 1.3861 9 8 1.5910 5.4173 0.6311 10 8 3.8476 5.3194 1.6406 11 6 1.8661 4.0692 2.9172 12 6 1.4720 5.2262 3.8374 13 6 2.6133 6.0641 4.3534 14 1 2.8896 6.9741 3.8417 15 6 3.3012 5.6718 5.4821 16 7 3.0474 4.5058 6.0349 17 14 4.5937 6.7966 6.2262 18 1 3.9637 8.0827 6.6189 19 1 5.1839 6.1478 7.4245 20 1 5.6614 7.0532 5.2265 21 6 0.1471 5.9362 3.5518 22 6 0.2752 5.0136 4.7666 23 6 3.6335 0.6560 0.0056 24 7 3.6333 -0.6524 0.0037 25 7 2.3027 -1.0900 -0.0033 26 6 1.8540 -2.4846 -0.0070 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 0.6483 2.2979 -1.7772 31 1 1.1206 3.9763 -1.4206 32 1 2.3184 2.8353 -2.0780 33 1 3.8484 3.1739 0.2649 34 1 2.6015 3.4402 3.4188 35 1 0.9826 3.4765 2.6799 36 1 3.4771 4.2607 6.8692 37 1 0.1011 7.0094 3.7372 38 1 -0.4439 5.5788 2.7086 39 1 -0.2317 4.0497 4.7220 40 1 0.3135 5.4796 5.7513 41 1 4.5083 1.2892 0.0110 42 1 1.7386 -2.8319 1.0197 43 1 0.8976 -2.5571 -0.5248 44 1 2.5919 -3.1023 -0.5188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414235002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:09 Heat of formation + Delta-G solvation = 24.835799 kcal Electronic energy + Delta-G solvation = -26834.918689 eV Core-core repulsion = 23110.064876 eV Total energy + Delta-G solvation = -3724.853813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46239 -36.73334 -36.55549 -35.97213 -35.01575 -33.45800 -32.04279 -32.00141 -29.31684 -28.13720 -27.03947 -26.76305 -25.41725 -22.91526 -21.20615 -20.87335 -19.85694 -19.42840 -18.43495 -17.12451 -16.74822 -16.39272 -15.81445 -15.41447 -14.98112 -14.66806 -14.50842 -14.28513 -14.10166 -13.76776 -13.62887 -13.27149 -13.09518 -12.94973 -12.80639 -12.53457 -12.30394 -12.06450 -11.90600 -11.79920 -11.44919 -11.23705 -11.10605 -11.02533 -10.94659 -10.86373 -10.59518 -10.49625 -10.43162 -10.09013 -9.73942 -9.34621 -9.28192 -8.92139 -8.50757 -8.36329 -8.07002 -6.10619 -4.20616 1.13886 1.73800 2.38595 2.70621 3.35813 3.38211 3.45248 3.49291 4.30416 4.41744 4.48221 4.61588 4.83184 4.88933 4.92295 5.00553 5.09525 5.14553 5.17157 5.19739 5.23977 5.26523 5.44695 5.54440 5.59732 5.69541 5.74251 5.89117 6.00929 6.05410 6.25624 6.34514 6.37924 6.45923 6.55957 6.64152 6.72825 6.89677 7.00583 7.27042 7.34761 7.40766 7.62615 7.84165 8.23257 8.85256 9.50801 10.97747 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.003951 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.123005 B = 7085.127540 C = 7383.779951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.089 3.911 3 C -0.238 4.238 4 C 0.235 3.765 5 H 0.083 0.917 6 C -0.164 4.164 7 N -1.124 6.124 8 S 2.607 3.393 9 O -0.973 6.973 10 O -0.949 6.949 11 C -0.553 4.553 12 C 0.043 3.957 13 C -0.511 4.511 14 H 0.068 0.932 15 C 0.081 3.919 16 N -0.875 5.875 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.210 4.210 22 C -0.140 4.140 23 C 0.064 3.936 24 N -0.297 5.297 25 N -0.376 5.376 26 C 0.102 3.898 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.263 0.737 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.182 0.818 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 -13.161 -12.561 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.251 4.251 4 C 0.126 3.874 5 H 0.101 0.899 6 C -0.223 4.223 7 N -0.880 5.880 8 S 2.704 3.296 9 O -0.963 6.963 10 O -0.939 6.939 11 C -0.686 4.686 12 C 0.041 3.959 13 C -0.548 4.548 14 H 0.086 0.914 15 C -0.124 4.124 16 N -0.511 5.511 17 Si 0.716 3.284 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.247 4.247 22 C -0.179 4.179 23 C -0.122 4.122 24 N -0.118 5.118 25 N -0.159 5.159 26 C -0.040 4.040 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.199 0.801 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.505 -13.604 -12.703 19.409 hybrid contribution 0.475 0.286 0.949 1.099 sum -5.030 -13.318 -11.754 18.461 Atomic orbital electron populations 1.20526 0.87258 1.04259 1.03421 1.20740 0.94455 0.86885 1.01764 1.19946 0.92875 0.94953 1.17334 1.18758 0.88403 0.84356 0.95865 0.89932 1.22303 1.01447 1.02727 0.95825 1.56056 1.14819 1.46610 1.70530 1.05157 0.75102 0.73343 0.76046 1.93494 1.62909 1.70869 1.69057 1.93560 1.40789 1.73835 1.85707 1.29990 1.11010 1.09866 1.17759 1.18290 0.88579 0.92483 0.96582 1.20503 1.13865 1.08000 1.12471 0.91355 1.24928 0.96138 0.94515 0.96794 1.69999 1.43426 1.19232 1.18441 0.86685 0.82194 0.80917 0.78640 1.19977 1.21202 1.19367 1.23221 1.03013 0.98592 0.99918 1.22529 1.02761 0.98046 0.94601 1.23617 0.97660 0.91840 0.99083 1.77373 0.96409 1.12901 1.25095 1.48380 1.03960 1.05812 1.57709 1.21804 1.00855 0.77976 1.03333 0.89980 0.91023 0.89205 0.92167 0.90568 0.92266 0.75704 0.84768 0.88641 0.92780 0.89524 0.90635 0.91617 0.89598 0.80103 0.90803 0.89642 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.68 36.01 0.35 -0.36 16 2 C 0.09 0.98 6.93 -82.26 -0.57 0.41 16 3 C -0.24 -3.01 5.24 -105.05 -0.55 -3.56 16 4 C 0.24 3.07 2.81 -69.08 -0.19 2.88 16 5 H 0.08 1.03 6.47 -51.93 -0.34 0.69 16 6 C -0.16 -1.94 9.50 37.16 0.35 -1.59 16 7 N -1.12 -17.03 5.26 -5.88 -0.03 -17.06 16 8 S 2.61 52.24 5.18 -107.50 -0.56 51.69 16 9 O -0.97 -20.60 17.11 -57.54 -0.98 -21.58 16 10 O -0.95 -22.74 17.48 -57.54 -1.01 -23.75 16 11 C -0.55 -11.61 5.83 37.16 0.22 -11.39 16 12 C 0.04 1.04 1.33 -155.66 -0.21 0.84 16 13 C -0.51 -14.05 7.97 -34.44 -0.27 -14.33 16 14 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 15 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 16 N -0.88 -24.33 12.93 55.43 0.72 -23.62 16 17 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.21 -4.55 9.96 -26.69 -0.27 -4.82 16 22 C -0.14 -3.17 9.44 -26.69 -0.25 -3.42 16 23 C 0.06 0.85 11.24 -17.36 -0.20 0.65 16 24 N -0.30 -4.12 12.57 30.63 0.39 -3.74 16 25 N -0.38 -4.26 4.01 -63.89 -0.26 -4.52 16 26 C 0.10 0.69 11.09 59.85 0.66 1.35 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.41 7.74 -51.93 -0.40 0.00 16 29 H 0.09 0.65 7.37 -51.93 -0.38 0.27 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.02 7.42 -51.93 -0.39 0.63 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 5.49 7.28 -34.48 -0.25 5.24 16 34 H 0.13 3.00 8.14 -51.93 -0.42 2.57 16 35 H 0.10 1.67 7.36 -51.92 -0.38 1.29 16 36 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 37 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 41 H 0.18 2.04 7.06 -52.49 -0.37 1.67 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.36 7.67 -51.93 -0.40 -0.04 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -35.37 377.76 -8.77 -44.13 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.68 Total: 7.41 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: -1.02 Total: -31.20 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.81 Total: -48.94 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.99 Total: -45.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.56 Total: 51.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.37 -8.77 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414235002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.971 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds