Wall clock time and date at job start Tue Mar 31 2020 15:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35315 * 126.12260 * 2 1 4 4 C 1.50696 * 126.04395 * 0.02562 * 3 2 1 5 5 H 1.08996 * 109.47354 * 39.71638 * 4 3 2 6 6 C 1.53000 * 109.46937 * 279.71367 * 4 3 2 7 7 N 1.46500 * 109.47043 * 159.71632 * 4 3 2 8 8 S 1.65606 * 119.99888 * 214.99694 * 7 4 3 9 9 O 1.42100 * 104.27520 * 308.93105 * 8 7 4 10 10 O 1.42100 * 104.27577 * 181.07389 * 8 7 4 11 11 C 1.81401 * 104.44715 * 65.00353 * 8 7 4 12 12 C 1.52996 * 109.47027 * 181.18484 * 11 8 7 13 13 C 1.50701 * 115.54892 * 294.69442 * 12 11 8 14 14 H 1.07994 * 120.00173 * 95.19363 * 13 12 11 15 15 C 1.37880 * 119.99757 * 274.91393 * 13 12 11 16 16 N 1.31509 * 120.00227 * 6.46511 * 15 13 12 17 17 Si 1.86800 * 119.99808 * 186.46824 * 15 13 12 18 18 H 1.48498 * 109.47151 * 60.00011 * 17 15 13 19 19 H 1.48502 * 109.47155 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47136 * 299.99691 * 17 15 13 21 21 C 1.53001 * 117.50066 * 80.36300 * 12 11 8 22 22 C 1.53000 * 117.49860 * 149.02420 * 12 11 8 23 23 C 1.39878 * 107.91584 * 179.75813 * 3 2 1 24 24 N 1.30837 * 108.19911 * 0.23829 * 23 3 2 25 25 N 1.34947 * 126.12670 * 180.17401 * 2 1 3 26 26 C 1.46498 * 126.03798 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.47164 * 90.00407 * 1 2 3 28 28 H 1.08995 * 109.47192 * 210.00222 * 1 2 3 29 29 H 1.09002 * 109.47362 * 330.00224 * 1 2 3 30 30 H 1.08999 * 109.47241 * 60.00604 * 6 4 3 31 31 H 1.09000 * 109.47175 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47457 * 299.99846 * 6 4 3 33 33 H 0.97003 * 120.00292 * 35.00412 * 7 4 3 34 34 H 1.08995 * 109.47318 * 61.17902 * 11 8 7 35 35 H 1.09006 * 109.47104 * 301.18102 * 11 8 7 36 36 H 0.97000 * 120.00773 * 185.06836 * 16 15 13 37 37 H 1.09004 * 117.49962 * 215.00396 * 21 12 11 38 38 H 1.09002 * 117.49965 * 0.02562 * 21 12 11 39 39 H 1.08994 * 117.50179 * 359.97351 * 22 12 11 40 40 H 1.09005 * 117.49860 * 144.97880 * 22 12 11 41 41 H 1.07994 * 125.89701 * 180.26203 * 23 3 2 42 42 H 1.08995 * 109.47333 * 270.26158 * 26 25 2 43 43 H 1.08998 * 109.46896 * 30.26398 * 26 25 2 44 44 H 1.08999 * 109.47307 * 150.25764 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 1 0.9797 2.6312 0.6575 6 6 1.4549 2.9389 -1.4210 7 7 2.9272 3.3891 0.4792 8 16 2.5797 4.7304 1.3861 9 8 1.5910 5.4173 0.6311 10 8 3.8476 5.3194 1.6406 11 6 1.8661 4.0692 2.9172 12 6 1.4720 5.2262 3.8374 13 6 2.6133 6.0641 4.3534 14 1 2.8896 6.9741 3.8417 15 6 3.3012 5.6718 5.4821 16 7 3.0474 4.5058 6.0349 17 14 4.5937 6.7966 6.2262 18 1 3.9637 8.0827 6.6189 19 1 5.1839 6.1478 7.4245 20 1 5.6614 7.0532 5.2265 21 6 0.1471 5.9362 3.5518 22 6 0.2752 5.0136 4.7666 23 6 3.6335 0.6560 0.0056 24 7 3.6333 -0.6524 0.0037 25 7 2.3027 -1.0900 -0.0033 26 6 1.8540 -2.4846 -0.0070 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 0.6483 2.2979 -1.7772 31 1 1.1206 3.9763 -1.4206 32 1 2.3184 2.8353 -2.0780 33 1 3.8484 3.1739 0.2649 34 1 2.6015 3.4402 3.4188 35 1 0.9826 3.4765 2.6799 36 1 3.4771 4.2607 6.8692 37 1 0.1011 7.0094 3.7372 38 1 -0.4439 5.5788 2.7086 39 1 -0.2317 4.0497 4.7220 40 1 0.3135 5.4796 5.7513 41 1 4.5083 1.2892 0.0110 42 1 1.7386 -2.8319 1.0197 43 1 0.8976 -2.5571 -0.5248 44 1 2.5919 -3.1023 -0.5188 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414235002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:08 Heat of formation + Delta-G solvation = -0.347734 kcal Electronic energy + Delta-G solvation = -26836.010729 eV Core-core repulsion = 23110.064876 eV Total energy + Delta-G solvation = -3725.945853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31792 -38.53539 -37.99569 -37.31539 -36.70665 -34.22747 -34.06014 -32.89000 -30.31170 -29.81901 -27.80505 -27.47478 -27.43284 -23.88729 -22.95687 -21.86347 -21.42170 -20.54366 -19.92165 -18.39468 -18.30359 -17.89004 -16.80511 -16.67582 -16.57236 -16.47341 -15.71233 -15.56136 -15.34375 -15.00867 -14.85049 -14.41010 -13.96482 -13.73534 -13.71770 -13.61268 -13.40574 -13.31995 -13.13680 -13.09289 -12.96302 -12.85587 -12.83251 -12.81970 -12.46229 -12.42049 -12.20128 -12.07339 -11.88072 -11.55859 -11.44294 -10.84527 -10.59705 -10.49171 -10.17101 -9.85023 -9.23597 -8.18261 -6.31817 -0.44944 0.90887 1.39184 1.42720 1.49056 1.67538 1.76199 2.08913 2.41638 3.00346 3.10314 3.38784 3.49515 3.60488 3.80732 3.98031 4.07679 4.17141 4.20265 4.32936 4.43468 4.46825 4.51927 4.54693 4.56088 4.66092 4.68749 4.80289 4.83564 4.87797 5.01399 5.01998 5.13457 5.18376 5.24887 5.38937 5.45618 5.50753 5.62765 5.64956 5.73785 6.15343 6.19495 6.24862 6.73774 6.74921 7.40632 8.89277 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.003951 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.123005 B = 7085.127540 C = 7383.779951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.097 3.903 3 C -0.260 4.260 4 C 0.231 3.769 5 H 0.092 0.908 6 C -0.162 4.162 7 N -1.112 6.112 8 S 2.626 3.374 9 O -0.985 6.985 10 O -0.996 6.996 11 C -0.551 4.551 12 C 0.007 3.993 13 C -0.529 4.529 14 H 0.049 0.951 15 C 0.041 3.959 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.278 1.278 21 C -0.195 4.195 22 C -0.137 4.137 23 C 0.047 3.953 24 N -0.334 5.334 25 N -0.377 5.377 26 C 0.091 3.909 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.417 0.583 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.186 0.814 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 -14.728 -13.494 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.032 4.032 3 C -0.273 4.273 4 C 0.123 3.877 5 H 0.110 0.890 6 C -0.221 4.221 7 N -0.871 5.871 8 S 2.723 3.277 9 O -0.974 6.974 10 O -0.986 6.986 11 C -0.684 4.684 12 C 0.005 3.995 13 C -0.566 4.566 14 H 0.067 0.933 15 C -0.162 4.162 16 N -0.530 5.530 17 Si 0.757 3.243 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.232 4.232 22 C -0.176 4.176 23 C -0.138 4.138 24 N -0.155 5.155 25 N -0.160 5.160 26 C -0.049 4.049 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.203 0.797 42 H 0.100 0.900 43 H 0.136 0.864 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.493 -15.177 -13.628 21.731 hybrid contribution 1.038 0.680 1.171 1.707 sum -6.455 -14.496 -12.457 20.174 Atomic orbital electron populations 1.20733 0.84366 1.05438 1.05188 1.21302 0.96108 0.86208 0.99563 1.19924 0.92903 0.95027 1.19399 1.18996 0.87723 0.84309 0.96681 0.88984 1.22286 1.02420 1.02243 0.95109 1.55635 1.16143 1.45950 1.69405 1.04317 0.73882 0.73756 0.75779 1.93471 1.63044 1.71889 1.69032 1.93493 1.42929 1.75774 1.86434 1.29867 1.12221 1.08849 1.17423 1.18418 0.88538 0.93980 0.98553 1.20715 1.15207 1.07973 1.12704 0.93294 1.25494 0.97660 0.95677 0.97324 1.70048 1.44353 1.19942 1.18701 0.86015 0.80173 0.80049 0.78068 1.19123 1.20057 1.20329 1.23277 1.01290 0.98376 1.00229 1.22487 1.02141 0.99221 0.93792 1.23830 0.98501 0.92060 0.99392 1.77298 0.98449 1.13232 1.26521 1.48747 1.03190 1.07412 1.56643 1.22182 1.02402 0.75871 1.04451 0.87768 0.89010 0.88918 0.89358 0.92202 0.92227 0.74714 0.86507 0.85004 0.92728 0.89912 0.87828 0.89333 0.91690 0.79712 0.89986 0.86443 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.68 71.24 0.69 -0.35 16 2 C 0.10 1.88 6.93 41.41 0.29 2.17 16 3 C -0.26 -6.11 5.24 -20.14 -0.11 -6.21 16 4 C 0.23 5.58 2.81 44.24 0.12 5.71 16 5 H 0.09 2.02 6.47 -2.39 -0.02 2.01 16 6 C -0.16 -3.47 9.50 71.98 0.68 -2.79 16 7 N -1.11 -32.94 5.26 -172.53 -0.91 -33.85 16 8 S 2.63 104.55 5.18 -56.49 -0.29 104.25 16 9 O -0.98 -40.70 17.11 -127.65 -2.18 -42.89 16 10 O -1.00 -48.88 17.48 -127.65 -2.23 -51.12 16 11 C -0.55 -22.64 5.83 71.98 0.42 -22.22 16 12 C 0.01 0.35 1.33 -52.93 -0.07 0.28 16 13 C -0.53 -29.51 7.97 25.60 0.20 -29.31 16 14 H 0.05 2.84 7.82 -2.91 -0.02 2.81 16 15 C 0.04 2.27 5.39 84.66 0.46 2.73 16 16 N -0.89 -50.04 12.93 21.45 0.28 -49.77 16 17 Si 0.93 44.63 29.55 68.60 2.03 46.65 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 21 C -0.19 -8.13 9.96 30.62 0.30 -7.82 16 22 C -0.14 -6.05 9.44 30.62 0.29 -5.77 16 23 C 0.05 1.23 11.24 85.24 0.96 2.19 16 24 N -0.33 -9.05 12.57 -57.02 -0.72 -9.76 16 25 N -0.38 -7.77 4.01 -356.04 -1.43 -9.20 16 26 C 0.09 0.99 11.09 127.77 1.42 2.40 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.61 7.74 -2.39 -0.02 0.59 16 29 H 0.09 0.96 7.37 -2.39 -0.02 0.95 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.49 7.42 -2.39 -0.02 1.47 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.42 11.21 7.28 -96.74 -0.70 10.50 16 34 H 0.12 5.23 8.14 -2.39 -0.02 5.21 16 35 H 0.13 4.28 7.36 -2.39 -0.02 4.27 16 36 H 0.26 14.11 8.32 -92.71 -0.77 13.33 16 37 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.06 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.19 4.27 7.06 -2.91 -0.02 4.25 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.12 0.51 7.67 -2.39 -0.02 0.49 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -77.07 377.76 0.50 -76.57 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.30 Total: 28.10 kcal Atomic # 6 Polarization: -64.65 SS G_CDS: 5.66 Total: -58.99 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -2.78 Total: -102.58 kcal Atomic # 8 Polarization: -89.59 SS G_CDS: -4.42 Total: -94.00 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 104.55 SS G_CDS: -0.29 Total: 104.25 kcal Total: -77.07 0.50 -76.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414235002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.220 kcal (2) G-P(sol) polarization free energy of solvation -77.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds