Wall clock time and date at job start Tue Mar 31 2020 15:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35318 * 126.12379 * 2 1 4 4 C 1.50699 * 126.04100 * 359.97438 * 3 2 1 5 5 H 1.08990 * 109.47111 * 325.00318 * 4 3 2 6 6 C 1.53003 * 109.46807 * 85.00562 * 4 3 2 7 7 N 1.46500 * 109.47025 * 205.00141 * 4 3 2 8 8 S 1.65600 * 119.99991 * 145.00324 * 7 4 3 9 9 O 1.42097 * 104.27312 * 308.92918 * 8 7 4 10 10 O 1.42101 * 104.27829 * 181.07310 * 8 7 4 11 11 C 1.81400 * 104.45011 * 64.99934 * 8 7 4 12 12 C 1.52997 * 109.46973 * 174.34581 * 11 8 7 13 13 C 1.50699 * 115.55146 * 295.22049 * 12 11 8 14 14 H 1.08006 * 119.99664 * 95.16929 * 13 12 11 15 15 C 1.37880 * 120.00083 * 274.88923 * 13 12 11 16 16 N 1.31510 * 120.00053 * 6.45717 * 15 13 12 17 17 Si 1.86797 * 119.99885 * 186.45298 * 15 13 12 18 18 H 1.48504 * 109.47184 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47250 * 120.00076 * 17 15 13 20 20 H 1.48493 * 109.47159 * 240.00300 * 17 15 13 21 21 C 1.52999 * 117.49675 * 80.89766 * 12 11 8 22 22 C 1.53006 * 117.49729 * 149.55238 * 12 11 8 23 23 C 1.39871 * 107.91737 * 180.24514 * 3 2 1 24 24 N 1.30848 * 108.20077 * 359.55467 * 23 3 2 25 25 N 1.34949 * 126.12497 * 179.97438 * 2 1 3 26 26 C 1.46493 * 126.03698 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47715 * 90.00124 * 1 2 3 28 28 H 1.09002 * 109.47094 * 210.00264 * 1 2 3 29 29 H 1.09004 * 109.47151 * 329.99928 * 1 2 3 30 30 H 1.08998 * 109.47132 * 299.99617 * 6 4 3 31 31 H 1.09002 * 109.47326 * 59.99545 * 6 4 3 32 32 H 1.08997 * 109.47037 * 179.97438 * 6 4 3 33 33 H 0.97006 * 119.99755 * 325.00325 * 7 4 3 34 34 H 1.09004 * 109.47085 * 54.34573 * 11 8 7 35 35 H 1.08998 * 109.46945 * 294.35149 * 11 8 7 36 36 H 0.96994 * 119.99878 * 185.02501 * 16 15 13 37 37 H 1.09004 * 117.49807 * 215.00208 * 21 12 11 38 38 H 1.09000 * 117.50005 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.49857 * 359.97438 * 22 12 11 40 40 H 1.08995 * 117.49830 * 144.97148 * 22 12 11 41 41 H 1.07996 * 125.90189 * 179.73703 * 23 3 2 42 42 H 1.08994 * 109.47587 * 90.00448 * 26 25 2 43 43 H 1.09007 * 109.46949 * 210.00249 * 26 25 2 44 44 H 1.09006 * 109.47536 * 329.99758 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 1 0.9309 2.6155 -0.5902 6 6 1.5670 2.9749 1.4363 7 7 2.8855 3.3757 -0.5842 8 16 2.4668 4.6941 -1.4945 9 8 1.5424 4.1839 -2.4455 10 8 3.7104 5.2460 -1.9048 11 6 1.6321 5.8036 -0.3272 12 6 1.3174 7.1305 -1.0209 13 6 2.5142 7.9408 -1.4474 14 1 2.8901 7.8586 -2.4566 15 6 3.1257 8.7915 -0.5511 16 7 2.7469 8.8028 0.7082 17 14 4.4924 9.9280 -1.1255 18 1 4.7285 9.7240 -2.5773 19 1 4.0981 11.3389 -0.8821 20 1 5.7367 9.6252 -0.3738 21 6 0.0738 7.1849 -1.9105 22 6 0.0766 7.8947 -0.5544 23 6 3.6335 0.6560 -0.0057 24 7 3.6334 -0.6525 0.0007 25 7 2.3026 -1.0900 0.0005 26 6 1.8539 -2.4845 0.0016 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 0.7915 2.3439 1.8706 31 1 2.4795 2.8870 2.0261 32 1 1.2336 4.0127 1.4360 33 1 3.8210 3.1649 -0.4373 34 1 2.2821 5.9862 0.5286 35 1 0.7049 5.3424 0.0128 36 1 3.1252 9.4509 1.3227 37 1 0.1213 7.8068 -2.8045 38 1 -0.5203 6.2756 -2.0012 39 1 -0.5156 7.4519 0.2465 40 1 0.1262 8.9835 -0.5556 41 1 4.5084 1.2891 -0.0111 42 1 1.7423 -2.8312 -1.0257 43 1 2.5900 -3.1027 0.5157 44 1 0.8956 -2.5575 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414235005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:13 Heat of formation + Delta-G solvation = 25.140844 kcal Electronic energy + Delta-G solvation = -26685.030495 eV Core-core repulsion = 22960.189910 eV Total energy + Delta-G solvation = -3724.840585 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47487 -36.74329 -36.54158 -36.00404 -35.02001 -33.48307 -32.04757 -31.99319 -29.37398 -28.18172 -27.02308 -26.76645 -25.40046 -22.91609 -21.21744 -20.87730 -19.83080 -19.43787 -18.47232 -17.11120 -16.79300 -16.38125 -15.86306 -15.39574 -15.01897 -14.64386 -14.51091 -14.30198 -14.10669 -13.81252 -13.57502 -13.35906 -13.22160 -12.91696 -12.78100 -12.53346 -12.32584 -12.04240 -11.87341 -11.78203 -11.45695 -11.26586 -11.14052 -11.06200 -10.94036 -10.86958 -10.54873 -10.49938 -10.44321 -10.07908 -9.73059 -9.37006 -9.25889 -8.91586 -8.51433 -8.36220 -8.07696 -6.10398 -4.18820 1.13583 1.72596 2.36380 2.69032 3.31814 3.40350 3.48339 3.49766 4.29399 4.42401 4.47664 4.62193 4.80431 4.83540 4.90125 5.05047 5.08366 5.14730 5.18450 5.19629 5.21820 5.26871 5.40129 5.56610 5.59725 5.67666 5.73030 5.87227 5.93742 6.04050 6.23971 6.29074 6.36209 6.44984 6.54413 6.63372 6.71350 6.88037 6.99943 7.25755 7.36595 7.40313 7.60510 7.86130 8.23975 8.87953 9.51897 10.98092 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.003490 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.030579 B = 8021.247297 C = 8453.849737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.089 3.911 3 C -0.232 4.232 4 C 0.227 3.773 5 H 0.092 0.908 6 C -0.174 4.174 7 N -1.123 6.123 8 S 2.605 3.395 9 O -0.979 6.979 10 O -0.945 6.945 11 C -0.554 4.554 12 C 0.043 3.957 13 C -0.505 4.505 14 H 0.070 0.930 15 C 0.079 3.921 16 N -0.876 5.876 17 Si 0.891 3.109 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.214 4.214 22 C -0.139 4.139 23 C 0.063 3.937 24 N -0.299 5.299 25 N -0.376 5.376 26 C 0.102 3.898 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.261 0.739 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.182 0.818 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 -18.671 3.642 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.245 4.245 4 C 0.118 3.882 5 H 0.110 0.890 6 C -0.233 4.233 7 N -0.879 5.879 8 S 2.702 3.298 9 O -0.969 6.969 10 O -0.935 6.935 11 C -0.687 4.687 12 C 0.040 3.960 13 C -0.542 4.542 14 H 0.089 0.911 15 C -0.126 4.126 16 N -0.512 5.512 17 Si 0.718 3.282 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.252 4.252 22 C -0.178 4.178 23 C -0.123 4.123 24 N -0.120 5.120 25 N -0.159 5.159 26 C -0.039 4.039 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.154 0.846 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.199 0.801 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.101 -19.746 2.863 20.594 hybrid contribution 0.469 1.329 0.696 1.572 sum -4.632 -18.417 3.559 19.321 Atomic orbital electron populations 1.20541 0.87219 1.03940 1.03814 1.20762 0.94500 0.86875 1.01703 1.19847 0.92794 0.94812 1.17030 1.18848 0.90281 0.84921 0.94103 0.88994 1.22461 1.02510 1.02123 0.96200 1.56002 1.14843 1.44694 1.72366 1.05179 0.75416 0.73543 0.75691 1.93493 1.66582 1.78466 1.58339 1.93567 1.41996 1.77802 1.80130 1.30083 1.11383 1.11423 1.15844 1.18322 0.89459 0.90918 0.97277 1.20599 1.11017 1.24459 0.98124 0.91141 1.24928 0.96354 0.96872 0.94396 1.70016 1.43706 1.34676 1.02828 0.86539 0.81987 0.80039 0.79640 1.19227 1.21022 1.20746 1.23249 1.04205 1.02325 0.95403 1.22526 1.01785 0.99066 0.94418 1.23625 0.97708 0.91854 0.99106 1.77370 0.96408 1.12881 1.25311 1.48368 1.03975 1.05808 1.57778 1.21804 1.00886 0.77969 1.03288 0.89730 0.91124 0.89233 0.91775 0.91641 0.91227 0.75682 0.84578 0.88311 0.92944 0.89515 0.90665 0.91525 0.89573 0.80101 0.90828 0.89398 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.80 36.01 0.35 -0.36 16 2 C 0.09 0.99 6.93 -82.26 -0.57 0.42 16 3 C -0.23 -2.96 5.21 -105.05 -0.55 -3.51 16 4 C 0.23 2.98 2.81 -69.08 -0.19 2.79 16 5 H 0.09 1.21 7.35 -51.93 -0.38 0.82 16 6 C -0.17 -1.99 9.46 37.16 0.35 -1.64 16 7 N -1.12 -17.18 5.29 -5.88 -0.03 -17.21 16 8 S 2.60 52.29 5.33 -107.50 -0.57 51.72 16 9 O -0.98 -21.24 17.39 -57.54 -1.00 -22.24 16 10 O -0.94 -22.65 17.10 -57.54 -0.98 -23.63 16 11 C -0.55 -11.28 4.88 37.16 0.18 -11.10 16 12 C 0.04 1.02 1.34 -155.66 -0.21 0.81 16 13 C -0.50 -13.73 7.66 -34.44 -0.26 -13.99 16 14 H 0.07 1.99 7.82 -52.48 -0.41 1.58 16 15 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 16 N -0.88 -23.87 12.93 55.43 0.72 -23.15 16 17 Si 0.89 21.47 29.55 -169.99 -5.02 16.45 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.21 -4.62 9.96 -26.70 -0.27 -4.88 16 22 C -0.14 -3.09 9.44 -26.69 -0.25 -3.35 16 23 C 0.06 0.83 11.25 -17.36 -0.20 0.63 16 24 N -0.30 -4.07 12.58 30.63 0.39 -3.69 16 25 N -0.38 -4.20 4.01 -63.88 -0.26 -4.45 16 26 C 0.10 0.66 11.27 59.84 0.67 1.33 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.35 7.08 -51.93 -0.37 -0.01 16 29 H 0.09 0.60 7.51 -51.93 -0.39 0.21 16 30 H 0.06 0.60 7.76 -51.93 -0.40 0.19 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.83 5.97 -51.93 -0.31 0.52 16 33 H 0.41 5.58 7.35 -34.47 -0.25 5.32 16 34 H 0.14 2.87 8.14 -51.92 -0.42 2.44 16 35 H 0.10 1.67 7.11 -51.93 -0.37 1.30 16 36 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 37 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 41 H 0.18 2.01 7.15 -52.49 -0.38 1.63 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.33 7.05 -51.93 -0.37 -0.03 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -35.39 374.64 -8.72 -44.10 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.57 Total: 7.25 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: -1.03 Total: -30.80 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.81 Total: -48.51 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.98 Total: -45.87 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 52.29 SS G_CDS: -0.57 Total: 51.72 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.39 -8.72 -44.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414235005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.245 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds