Wall clock time and date at job start Tue Mar 31 2020 15:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35318 * 126.12379 * 2 1 4 4 C 1.50699 * 126.04100 * 359.97438 * 3 2 1 5 5 H 1.08990 * 109.47111 * 325.00318 * 4 3 2 6 6 C 1.53003 * 109.46807 * 85.00562 * 4 3 2 7 7 N 1.46500 * 109.47025 * 205.00141 * 4 3 2 8 8 S 1.65600 * 119.99991 * 145.00324 * 7 4 3 9 9 O 1.42097 * 104.27312 * 308.92918 * 8 7 4 10 10 O 1.42101 * 104.27829 * 181.07310 * 8 7 4 11 11 C 1.81400 * 104.45011 * 64.99934 * 8 7 4 12 12 C 1.52997 * 109.46973 * 174.34581 * 11 8 7 13 13 C 1.50699 * 115.55146 * 295.22049 * 12 11 8 14 14 H 1.08006 * 119.99664 * 95.16929 * 13 12 11 15 15 C 1.37880 * 120.00083 * 274.88923 * 13 12 11 16 16 N 1.31510 * 120.00053 * 6.45717 * 15 13 12 17 17 Si 1.86797 * 119.99885 * 186.45298 * 15 13 12 18 18 H 1.48504 * 109.47184 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47250 * 120.00076 * 17 15 13 20 20 H 1.48493 * 109.47159 * 240.00300 * 17 15 13 21 21 C 1.52999 * 117.49675 * 80.89766 * 12 11 8 22 22 C 1.53006 * 117.49729 * 149.55238 * 12 11 8 23 23 C 1.39871 * 107.91737 * 180.24514 * 3 2 1 24 24 N 1.30848 * 108.20077 * 359.55467 * 23 3 2 25 25 N 1.34949 * 126.12497 * 179.97438 * 2 1 3 26 26 C 1.46493 * 126.03698 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47715 * 90.00124 * 1 2 3 28 28 H 1.09002 * 109.47094 * 210.00264 * 1 2 3 29 29 H 1.09004 * 109.47151 * 329.99928 * 1 2 3 30 30 H 1.08998 * 109.47132 * 299.99617 * 6 4 3 31 31 H 1.09002 * 109.47326 * 59.99545 * 6 4 3 32 32 H 1.08997 * 109.47037 * 179.97438 * 6 4 3 33 33 H 0.97006 * 119.99755 * 325.00325 * 7 4 3 34 34 H 1.09004 * 109.47085 * 54.34573 * 11 8 7 35 35 H 1.08998 * 109.46945 * 294.35149 * 11 8 7 36 36 H 0.96994 * 119.99878 * 185.02501 * 16 15 13 37 37 H 1.09004 * 117.49807 * 215.00208 * 21 12 11 38 38 H 1.09000 * 117.50005 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.49857 * 359.97438 * 22 12 11 40 40 H 1.08995 * 117.49830 * 144.97148 * 22 12 11 41 41 H 1.07996 * 125.90189 * 179.73703 * 23 3 2 42 42 H 1.08994 * 109.47587 * 90.00448 * 26 25 2 43 43 H 1.09007 * 109.46949 * 210.00249 * 26 25 2 44 44 H 1.09006 * 109.47536 * 329.99758 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 1 0.9309 2.6155 -0.5902 6 6 1.5670 2.9749 1.4363 7 7 2.8855 3.3757 -0.5842 8 16 2.4668 4.6941 -1.4945 9 8 1.5424 4.1839 -2.4455 10 8 3.7104 5.2460 -1.9048 11 6 1.6321 5.8036 -0.3272 12 6 1.3174 7.1305 -1.0209 13 6 2.5142 7.9408 -1.4474 14 1 2.8901 7.8586 -2.4566 15 6 3.1257 8.7915 -0.5511 16 7 2.7469 8.8028 0.7082 17 14 4.4924 9.9280 -1.1255 18 1 4.7285 9.7240 -2.5773 19 1 4.0981 11.3389 -0.8821 20 1 5.7367 9.6252 -0.3738 21 6 0.0738 7.1849 -1.9105 22 6 0.0766 7.8947 -0.5544 23 6 3.6335 0.6560 -0.0057 24 7 3.6334 -0.6525 0.0007 25 7 2.3026 -1.0900 0.0005 26 6 1.8539 -2.4845 0.0016 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 0.7915 2.3439 1.8706 31 1 2.4795 2.8870 2.0261 32 1 1.2336 4.0127 1.4360 33 1 3.8210 3.1649 -0.4373 34 1 2.2821 5.9862 0.5286 35 1 0.7049 5.3424 0.0128 36 1 3.1252 9.4509 1.3227 37 1 0.1213 7.8068 -2.8045 38 1 -0.5203 6.2756 -2.0012 39 1 -0.5156 7.4519 0.2465 40 1 0.1262 8.9835 -0.5556 41 1 4.5084 1.2891 -0.0111 42 1 1.7423 -2.8312 -1.0257 43 1 2.5900 -3.1027 0.5157 44 1 0.8956 -2.5575 0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414235005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:12 Heat of formation + Delta-G solvation = -0.108412 kcal Electronic energy + Delta-G solvation = -26686.125385 eV Core-core repulsion = 22960.189910 eV Total energy + Delta-G solvation = -3725.935475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32433 -38.52133 -37.98589 -37.33444 -36.72508 -34.24402 -34.02598 -32.88722 -30.41193 -29.75119 -27.82784 -27.50109 -27.33968 -23.88051 -22.94653 -21.86481 -21.35645 -20.56382 -19.94767 -18.38427 -18.33725 -17.85697 -16.83479 -16.63321 -16.59513 -16.46755 -15.68513 -15.56444 -15.33993 -15.01976 -14.90910 -14.39419 -13.97358 -13.83987 -13.66804 -13.54690 -13.39493 -13.27110 -13.13361 -13.09374 -12.93929 -12.86824 -12.84897 -12.80720 -12.43452 -12.39478 -12.16862 -12.15546 -11.84561 -11.52390 -11.44403 -10.81659 -10.57721 -10.46772 -10.18707 -9.83509 -9.23926 -8.15402 -6.27054 -0.44309 0.89375 1.38333 1.43075 1.53988 1.66583 1.74357 2.09829 2.44053 3.02539 3.12985 3.40055 3.48577 3.62001 3.80200 3.99422 4.12431 4.19054 4.24567 4.33568 4.39898 4.43255 4.46084 4.54100 4.59067 4.66962 4.69506 4.78627 4.82576 4.88772 5.00712 5.01548 5.12996 5.18042 5.26882 5.35101 5.45559 5.53915 5.64108 5.64177 5.78176 6.14981 6.19877 6.28259 6.72108 6.78968 7.44302 8.92370 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.003490 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.030579 B = 8021.247297 C = 8453.849737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.096 3.904 3 C -0.257 4.257 4 C 0.225 3.775 5 H 0.095 0.905 6 C -0.172 4.172 7 N -1.112 6.112 8 S 2.620 3.380 9 O -0.997 6.997 10 O -0.993 6.993 11 C -0.547 4.547 12 C 0.008 3.992 13 C -0.522 4.522 14 H 0.046 0.954 15 C 0.041 3.959 16 N -0.891 5.891 17 Si 0.932 3.068 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.279 1.279 21 C -0.203 4.203 22 C -0.134 4.134 23 C 0.047 3.953 24 N -0.333 5.333 25 N -0.377 5.377 26 C 0.091 3.909 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.417 0.583 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.187 0.813 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 -20.337 4.618 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.033 4.033 3 C -0.270 4.270 4 C 0.117 3.883 5 H 0.112 0.888 6 C -0.231 4.231 7 N -0.871 5.871 8 S 2.718 3.282 9 O -0.987 6.987 10 O -0.983 6.983 11 C -0.680 4.680 12 C 0.006 3.994 13 C -0.559 4.559 14 H 0.065 0.935 15 C -0.161 4.161 16 N -0.528 5.528 17 Si 0.758 3.242 18 H -0.201 1.201 19 H -0.197 1.197 20 H -0.205 1.205 21 C -0.240 4.240 22 C -0.173 4.173 23 C -0.138 4.138 24 N -0.154 5.154 25 N -0.160 5.160 26 C -0.049 4.049 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.252 0.748 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.204 0.796 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.995 -21.421 3.836 22.858 hybrid contribution 1.013 1.718 0.379 2.030 sum -5.982 -19.703 4.216 21.018 Atomic orbital electron populations 1.20734 0.84411 1.05854 1.04732 1.21317 0.96136 0.86278 0.99613 1.19885 0.92988 0.94984 1.19171 1.19051 0.89407 0.84918 0.94898 0.88757 1.22458 1.03308 1.02255 0.95083 1.55586 1.16011 1.43533 1.72011 1.04427 0.74262 0.73796 0.75741 1.93460 1.66853 1.78808 1.59530 1.93500 1.44071 1.79244 1.81469 1.29938 1.13089 1.10020 1.14963 1.18441 0.89069 0.92437 0.99426 1.20736 1.12498 1.25502 0.97204 0.93537 1.25443 0.97952 0.98000 0.94712 1.70046 1.44515 1.35152 1.03074 0.85908 0.80232 0.79374 0.78714 1.20066 1.19703 1.20483 1.23308 1.02802 1.03052 0.94842 1.22490 1.01154 0.97985 0.95678 1.23839 0.98464 0.92107 0.99430 1.77295 0.98376 1.13137 1.26610 1.48750 1.03200 1.07417 1.56599 1.22197 1.02418 0.75768 1.04534 0.89144 0.88295 0.88333 0.89161 0.91864 0.91739 0.74755 0.85461 0.84579 0.92735 0.90021 0.88033 0.89067 0.91627 0.79620 0.89817 0.89044 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.80 71.24 0.70 -0.39 16 2 C 0.10 1.89 6.93 41.41 0.29 2.18 16 3 C -0.26 -6.20 5.21 -20.14 -0.10 -6.30 16 4 C 0.23 5.52 2.81 44.25 0.12 5.64 16 5 H 0.09 2.26 7.35 -2.39 -0.02 2.24 16 6 C -0.17 -3.53 9.46 71.98 0.68 -2.85 16 7 N -1.11 -33.40 5.29 -172.53 -0.91 -34.32 16 8 S 2.62 104.66 5.33 -56.49 -0.30 104.36 16 9 O -1.00 -42.47 17.39 -127.65 -2.22 -44.69 16 10 O -0.99 -48.81 17.10 -127.65 -2.18 -50.99 16 11 C -0.55 -21.65 4.88 71.98 0.35 -21.30 16 12 C 0.01 0.40 1.34 -52.93 -0.07 0.33 16 13 C -0.52 -28.84 7.66 25.60 0.20 -28.64 16 14 H 0.05 2.72 7.82 -2.91 -0.02 2.69 16 15 C 0.04 2.26 5.39 84.66 0.46 2.71 16 16 N -0.89 -48.52 12.93 21.45 0.28 -48.25 16 17 Si 0.93 44.37 29.55 68.60 2.03 46.40 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 C -0.20 -8.45 9.96 30.62 0.30 -8.14 16 22 C -0.13 -5.80 9.44 30.62 0.29 -5.51 16 23 C 0.05 1.21 11.25 85.23 0.96 2.17 16 24 N -0.33 -8.86 12.58 -57.02 -0.72 -9.58 16 25 N -0.38 -7.67 4.01 -356.03 -1.43 -9.10 16 26 C 0.09 0.93 11.27 127.77 1.44 2.37 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.52 7.08 -2.39 -0.02 0.51 16 29 H 0.10 0.93 7.51 -2.38 -0.02 0.91 16 30 H 0.09 1.37 7.76 -2.39 -0.02 1.35 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.38 5.97 -2.39 -0.01 1.37 16 33 H 0.42 11.42 7.35 -96.74 -0.71 10.71 16 34 H 0.13 5.29 8.14 -2.39 -0.02 5.27 16 35 H 0.14 4.23 7.11 -2.39 -0.02 4.21 16 36 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 37 H 0.08 3.43 8.14 -2.38 -0.02 3.42 16 38 H 0.10 3.66 8.14 -2.39 -0.02 3.65 16 39 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.19 4.23 7.15 -2.91 -0.02 4.21 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.12 0.44 7.05 -2.38 -0.02 0.43 16 Total: -1.00 -76.86 374.64 0.46 -76.40 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.30 Total: 27.51 kcal Atomic # 6 Polarization: -63.36 SS G_CDS: 5.61 Total: -57.74 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -2.78 Total: -101.25 kcal Atomic # 8 Polarization: -91.27 SS G_CDS: -4.40 Total: -95.68 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 104.66 SS G_CDS: -0.30 Total: 104.36 kcal Total: -76.86 0.46 -76.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414235005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.294 kcal (2) G-P(sol) polarization free energy of solvation -76.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds