Wall clock time and date at job start Tue Mar 31 2020 14:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32517 * 120.41580 * 2 1 4 4 C 1.31764 * 120.96624 * 180.30523 * 3 2 1 5 5 N 1.31799 * 121.81267 * 359.66464 * 4 3 2 6 6 C 1.32795 * 120.71499 * 0.02562 * 5 4 3 7 7 O 1.35515 * 120.50701 * 180.02562 * 6 5 4 8 8 C 1.38192 * 120.40551 * 179.68885 * 2 1 3 9 9 C 1.50698 * 120.82786 * 0.02562 * 8 2 1 10 10 C 1.52992 * 109.47299 * 269.71870 * 9 8 2 11 11 C 1.50696 * 109.47436 * 179.97438 * 10 9 8 12 12 O 1.21291 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00383 * 179.97438 * 11 10 9 14 14 C 1.39932 * 120.00137 * 174.89521 * 13 11 10 15 15 C 1.39285 * 119.94901 * 145.79087 * 14 13 11 16 16 C 1.38489 * 120.43148 * 180.02562 * 15 14 13 17 17 C 1.37683 * 120.31787 * 359.97309 * 16 15 14 18 18 C 1.40732 * 119.88922 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.21228 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00221 * 205.17985 * 19 18 17 21 21 C 1.39931 * 120.00144 * 25.17266 * 19 18 17 22 22 N 1.30830 * 119.99622 * 16.79992 * 21 19 18 23 23 Si 1.86796 * 120.00195 * 196.79435 * 21 19 18 24 24 H 1.48503 * 109.46966 * 90.00057 * 23 21 19 25 25 H 1.48500 * 109.47083 * 210.00302 * 23 21 19 26 26 H 1.48502 * 109.47344 * 330.00172 * 23 21 19 27 27 C 1.38245 * 119.94762 * 325.51295 * 14 13 11 28 28 H 1.09001 * 109.47607 * 270.31131 * 1 2 3 29 29 H 1.09007 * 109.46864 * 30.31050 * 1 2 3 30 30 H 1.09000 * 109.47607 * 150.30026 * 1 2 3 31 31 H 1.08003 * 119.08917 * 179.67882 * 4 3 2 32 32 H 0.96705 * 113.99659 * 269.97718 * 7 6 5 33 33 H 1.09002 * 109.47065 * 149.71682 * 9 8 2 34 34 H 1.08995 * 109.46694 * 29.72375 * 9 8 2 35 35 H 1.09002 * 109.47215 * 59.99904 * 10 9 8 36 36 H 1.09002 * 109.47278 * 300.00460 * 10 9 8 37 37 H 0.97004 * 119.99702 * 354.90035 * 13 11 10 38 38 H 1.07997 * 119.78548 * 359.97291 * 15 14 13 39 39 H 1.07995 * 119.83840 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.05489 * 180.02562 * 17 16 15 41 41 H 0.97004 * 119.99920 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.16149 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1778 1.1428 0.0000 4 6 3.4954 1.1555 -0.0060 5 7 4.2009 0.0422 -0.0057 6 6 3.5997 -1.1418 0.0002 7 8 4.3292 -2.2838 0.0011 8 6 2.2063 -1.1918 0.0065 9 6 1.4811 -2.5128 0.0131 10 6 1.2413 -2.9558 1.4577 11 6 0.5156 -4.2765 1.4643 12 8 0.2196 -4.8111 0.4166 13 7 0.1962 -4.8641 2.6345 14 6 -0.5703 -6.0348 2.6432 15 6 -0.3416 -7.0084 3.6128 16 6 -1.0939 -8.1710 3.6305 17 6 -2.0773 -8.3770 2.6891 18 6 -2.3196 -7.4022 1.7034 19 6 -3.3276 -7.6069 0.7329 20 1 -3.2643 -7.1108 -0.2244 21 6 -4.4069 -8.4524 1.0127 22 7 -4.6695 -8.7906 2.2489 23 14 -5.4728 -9.0980 -0.3788 24 1 -4.9159 -10.3825 -0.8740 25 1 -6.8554 -9.3163 0.1171 26 1 -5.4946 -8.1084 -1.4859 27 6 -1.5570 -6.2209 1.6931 28 1 -0.3634 0.0056 1.0276 29 1 -0.3633 0.8873 -0.5187 30 1 -0.3634 -0.8926 -0.5091 31 1 4.0114 2.1043 -0.0111 32 1 4.5373 -2.6182 -0.8822 33 1 2.0844 -3.2611 -0.5010 34 1 0.5242 -2.4044 -0.4974 35 1 0.6380 -2.2075 1.9718 36 1 2.1983 -3.0641 1.9682 37 1 0.4975 -4.4754 3.4706 38 1 0.4278 -6.8559 4.3551 39 1 -0.9082 -8.9197 4.3863 40 1 -2.6616 -9.2850 2.7071 41 1 -5.4179 -9.3764 2.4430 42 1 -1.7379 -5.4648 0.9433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434431604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:47 Heat of formation + Delta-G solvation = -16.410728 kcal Electronic energy + Delta-G solvation = -26323.343686 eV Core-core repulsion = 22461.257338 eV Total energy + Delta-G solvation = -3862.086348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63376 -39.73429 -37.99887 -37.28705 -35.47848 -34.45346 -33.45641 -33.03535 -30.91707 -29.83355 -28.94414 -28.01008 -25.62915 -25.26273 -23.18716 -22.59614 -21.24151 -20.77511 -19.54908 -19.13503 -18.37526 -17.72927 -16.90398 -16.54364 -15.64955 -15.59920 -15.22276 -15.03380 -14.60708 -14.54504 -14.47638 -13.73312 -13.60900 -13.44456 -13.16352 -12.96612 -12.88832 -12.70288 -12.42240 -12.18292 -12.09001 -11.66330 -11.27806 -11.14885 -11.12699 -10.93024 -10.84247 -10.60036 -10.46955 -10.18100 -9.69764 -9.62695 -9.53908 -9.38296 -9.08377 -8.96055 -7.46399 -6.93220 -6.72235 -4.34936 0.48231 0.62627 2.57168 2.82679 2.99678 3.08710 3.13184 3.19133 3.31106 3.36710 3.61006 3.71286 3.95625 4.03626 4.42118 4.49206 4.63802 4.79991 4.86140 4.99129 5.09014 5.22272 5.28130 5.36711 5.48311 5.60997 5.71620 5.82451 5.86914 6.10769 6.23849 6.38266 6.60023 6.75047 7.00942 7.03063 7.03938 7.05736 7.24525 7.54543 7.71549 7.73170 7.96443 8.07939 8.16584 8.24663 8.60993 8.72038 8.92995 8.97682 10.20877 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002482 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.223524 B =11277.160534 C =12085.097657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.192 3.808 3 N -0.526 5.526 4 C 0.314 3.686 5 N -0.545 5.545 6 C 0.364 3.636 7 O -0.472 6.472 8 C -0.199 4.199 9 C -0.053 4.053 10 C -0.132 4.132 11 C 0.506 3.494 12 O -0.518 6.518 13 N -0.669 5.669 14 C 0.151 3.849 15 C -0.262 4.262 16 C -0.093 4.093 17 C -0.172 4.172 18 C 0.119 3.881 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.795 5.795 23 Si 0.909 3.091 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.210 4.210 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.200 0.800 32 H 0.409 0.591 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.280 0.720 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 15.074 -2.653 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.048 3.952 3 N -0.242 5.242 4 C 0.026 3.974 5 N -0.270 5.270 6 C 0.177 3.823 7 O -0.279 6.279 8 C -0.205 4.205 9 C -0.092 4.092 10 C -0.172 4.172 11 C 0.292 3.708 12 O -0.393 6.393 13 N -0.313 5.313 14 C 0.059 3.941 15 C -0.283 4.283 16 C -0.112 4.112 17 C -0.192 4.192 18 C 0.116 3.884 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.421 5.421 23 Si 0.733 3.267 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.231 4.231 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.217 0.783 32 H 0.269 0.731 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.091 0.909 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.223 15.431 -2.694 19.270 hybrid contribution -0.460 -0.934 -0.375 1.107 sum 10.763 14.497 -3.070 18.314 Atomic orbital electron populations 1.20935 0.87337 1.04710 1.04273 1.21615 0.97852 0.86892 0.88888 1.68286 1.10232 1.30135 1.15559 1.24764 0.86433 0.95846 0.90317 1.67982 1.43310 0.98987 1.16688 1.19336 0.86685 0.85616 0.90656 1.84726 1.73507 1.35410 1.34300 1.21685 0.94261 0.98481 1.06054 1.20151 1.01172 0.91400 0.96468 1.21593 1.01875 0.95396 0.98355 1.20498 0.79687 0.86534 0.84080 1.90755 1.52966 1.64380 1.31245 1.43490 1.52975 1.26375 1.08423 1.17437 0.92362 0.85727 0.98561 1.20052 1.06793 0.97124 1.04348 1.20469 0.96525 0.95787 0.98379 1.21354 0.99256 1.00516 0.98032 1.17493 0.90323 0.89133 0.91429 1.19581 1.04417 1.23647 1.01150 0.90362 1.25904 0.97714 0.94397 0.96178 1.69829 1.25564 1.27339 1.19360 0.86304 0.78576 0.80083 0.81708 1.19278 1.20364 1.18597 1.20951 1.00188 0.99463 1.02501 0.89158 0.89631 0.89180 0.78342 0.73149 0.89418 0.88995 0.89041 0.88829 0.76816 0.89337 0.89060 0.86316 0.90941 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.83 36.00 0.35 -0.54 16 2 C 0.19 1.88 6.82 -82.32 -0.56 1.32 16 3 N -0.53 -5.38 10.37 -10.87 -0.11 -5.50 16 4 C 0.31 2.93 12.28 -92.18 -1.13 1.80 16 5 N -0.54 -5.91 10.46 -14.63 -0.15 -6.07 16 6 C 0.36 3.83 7.81 -16.69 -0.13 3.70 16 7 O -0.47 -4.41 12.75 -18.24 -0.23 -4.64 16 8 C -0.20 -1.99 5.18 -104.20 -0.54 -2.53 16 9 C -0.05 -0.56 4.10 -27.89 -0.11 -0.68 16 10 C -0.13 -1.47 5.68 -27.89 -0.16 -1.63 16 11 C 0.51 8.30 7.56 -10.99 -0.08 8.21 16 12 O -0.52 -10.71 13.74 5.55 0.08 -10.64 16 13 N -0.67 -11.46 5.34 -9.91 -0.05 -11.52 16 14 C 0.15 3.35 6.25 -83.77 -0.52 2.83 16 15 C -0.26 -5.74 9.97 -39.10 -0.39 -6.13 16 16 C -0.09 -2.16 10.02 -39.69 -0.40 -2.55 16 17 C -0.17 -4.49 8.69 -38.84 -0.34 -4.83 16 18 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 19 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 20 H 0.08 2.09 7.90 -52.48 -0.41 1.67 16 21 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 22 N -0.80 -20.58 10.94 55.55 0.61 -19.97 16 23 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 27 C -0.21 -5.33 8.39 -38.68 -0.32 -5.66 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.68 6.07 -51.93 -0.31 0.36 16 31 H 0.20 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.41 1.93 9.06 45.56 0.41 2.34 16 33 H 0.09 0.97 7.59 -51.93 -0.39 0.57 16 34 H 0.09 0.99 6.02 -51.93 -0.31 0.67 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 5.29 8.82 -40.82 -0.36 4.93 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 41 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 42 H 0.11 2.72 6.48 -52.49 -0.34 2.38 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -33.55 360.02 -8.98 -42.53 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.14 Total: 11.48 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -5.36 Total: -14.99 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.29 Total: -43.05 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.16 Total: -15.27 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.55 -8.98 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434431604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.115 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds