Wall clock time and date at job start Tue Mar 31 2020 14:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32517 * 120.41580 * 2 1 4 4 C 1.31764 * 120.96624 * 180.30523 * 3 2 1 5 5 N 1.31799 * 121.81267 * 359.66464 * 4 3 2 6 6 C 1.32795 * 120.71499 * 0.02562 * 5 4 3 7 7 O 1.35515 * 120.50701 * 180.02562 * 6 5 4 8 8 C 1.38192 * 120.40551 * 179.68885 * 2 1 3 9 9 C 1.50698 * 120.82786 * 0.02562 * 8 2 1 10 10 C 1.52992 * 109.47299 * 269.71870 * 9 8 2 11 11 C 1.50696 * 109.47436 * 179.97438 * 10 9 8 12 12 O 1.21291 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00383 * 179.97438 * 11 10 9 14 14 C 1.39932 * 120.00137 * 174.89521 * 13 11 10 15 15 C 1.39285 * 119.94901 * 145.79087 * 14 13 11 16 16 C 1.38489 * 120.43148 * 180.02562 * 15 14 13 17 17 C 1.37683 * 120.31787 * 359.97309 * 16 15 14 18 18 C 1.40732 * 119.88922 * 0.02562 * 17 16 15 19 19 C 1.41408 * 120.21228 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00221 * 205.17985 * 19 18 17 21 21 C 1.39931 * 120.00144 * 25.17266 * 19 18 17 22 22 N 1.30830 * 119.99622 * 16.79992 * 21 19 18 23 23 Si 1.86796 * 120.00195 * 196.79435 * 21 19 18 24 24 H 1.48503 * 109.46966 * 90.00057 * 23 21 19 25 25 H 1.48500 * 109.47083 * 210.00302 * 23 21 19 26 26 H 1.48502 * 109.47344 * 330.00172 * 23 21 19 27 27 C 1.38245 * 119.94762 * 325.51295 * 14 13 11 28 28 H 1.09001 * 109.47607 * 270.31131 * 1 2 3 29 29 H 1.09007 * 109.46864 * 30.31050 * 1 2 3 30 30 H 1.09000 * 109.47607 * 150.30026 * 1 2 3 31 31 H 1.08003 * 119.08917 * 179.67882 * 4 3 2 32 32 H 0.96705 * 113.99659 * 269.97718 * 7 6 5 33 33 H 1.09002 * 109.47065 * 149.71682 * 9 8 2 34 34 H 1.08995 * 109.46694 * 29.72375 * 9 8 2 35 35 H 1.09002 * 109.47215 * 59.99904 * 10 9 8 36 36 H 1.09002 * 109.47278 * 300.00460 * 10 9 8 37 37 H 0.97004 * 119.99702 * 354.90035 * 13 11 10 38 38 H 1.07997 * 119.78548 * 359.97291 * 15 14 13 39 39 H 1.07995 * 119.83840 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.05489 * 180.02562 * 17 16 15 41 41 H 0.97004 * 119.99920 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.16149 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1778 1.1428 0.0000 4 6 3.4954 1.1555 -0.0060 5 7 4.2009 0.0422 -0.0057 6 6 3.5997 -1.1418 0.0002 7 8 4.3292 -2.2838 0.0011 8 6 2.2063 -1.1918 0.0065 9 6 1.4811 -2.5128 0.0131 10 6 1.2413 -2.9558 1.4577 11 6 0.5156 -4.2765 1.4643 12 8 0.2196 -4.8111 0.4166 13 7 0.1962 -4.8641 2.6345 14 6 -0.5703 -6.0348 2.6432 15 6 -0.3416 -7.0084 3.6128 16 6 -1.0939 -8.1710 3.6305 17 6 -2.0773 -8.3770 2.6891 18 6 -2.3196 -7.4022 1.7034 19 6 -3.3276 -7.6069 0.7329 20 1 -3.2643 -7.1108 -0.2244 21 6 -4.4069 -8.4524 1.0127 22 7 -4.6695 -8.7906 2.2489 23 14 -5.4728 -9.0980 -0.3788 24 1 -4.9159 -10.3825 -0.8740 25 1 -6.8554 -9.3163 0.1171 26 1 -5.4946 -8.1084 -1.4859 27 6 -1.5570 -6.2209 1.6931 28 1 -0.3634 0.0056 1.0276 29 1 -0.3633 0.8873 -0.5187 30 1 -0.3634 -0.8926 -0.5091 31 1 4.0114 2.1043 -0.0111 32 1 4.5373 -2.6182 -0.8822 33 1 2.0844 -3.2611 -0.5010 34 1 0.5242 -2.4044 -0.4974 35 1 0.6380 -2.2075 1.9718 36 1 2.1983 -3.0641 1.9682 37 1 0.4975 -4.4754 3.4706 38 1 0.4278 -6.8559 4.3551 39 1 -0.9082 -8.9197 4.3863 40 1 -2.6616 -9.2850 2.7071 41 1 -5.4179 -9.3764 2.4430 42 1 -1.7379 -5.4648 0.9433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434431604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:46 Heat of formation + Delta-G solvation = -40.383536 kcal Electronic energy + Delta-G solvation = -26324.383225 eV Core-core repulsion = 22461.257338 eV Total energy + Delta-G solvation = -3863.125887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37447 -41.18838 -39.03793 -38.68650 -36.43082 -36.05307 -34.81161 -34.23931 -31.84039 -31.74106 -30.05980 -29.23302 -27.26566 -26.51597 -24.00575 -23.61557 -22.84291 -22.40424 -21.02619 -19.84294 -19.49794 -19.10822 -18.21155 -17.43712 -17.25429 -16.88167 -16.57145 -16.38389 -16.12110 -15.59787 -15.22638 -15.05039 -14.95804 -14.47374 -14.45340 -14.14919 -13.91348 -13.77088 -13.53916 -13.48918 -13.25712 -12.99870 -12.91927 -12.85426 -12.76248 -12.17873 -12.06384 -11.94370 -11.61702 -11.49789 -11.32908 -11.14937 -10.87334 -10.66631 -10.35356 -10.21160 -9.39172 -8.74281 -8.59573 -6.36250 -0.24307 -0.10449 0.88015 1.00984 1.37093 1.49173 1.50404 1.82841 2.20584 2.25338 2.33811 2.64801 2.74513 3.06113 3.33888 3.53697 3.73358 3.74053 3.86994 4.10235 4.18548 4.32980 4.44420 4.48113 4.57120 4.63603 4.67393 4.71270 4.98730 5.04800 5.06009 5.08166 5.11175 5.14140 5.26752 5.33947 5.41332 5.77083 5.87385 5.87893 6.08826 6.12281 6.35439 6.47373 6.66431 6.69663 6.94701 7.01727 7.02077 7.35394 8.33862 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002482 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.223524 B =11277.160534 C =12085.097657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.190 3.810 3 N -0.540 5.540 4 C 0.315 3.685 5 N -0.564 5.564 6 C 0.361 3.639 7 O -0.481 6.481 8 C -0.203 4.203 9 C -0.047 4.047 10 C -0.116 4.116 11 C 0.504 3.496 12 O -0.564 6.564 13 N -0.661 5.661 14 C 0.159 3.841 15 C -0.254 4.254 16 C -0.093 4.093 17 C -0.200 4.200 18 C 0.088 3.912 19 C -0.500 4.500 20 H 0.065 0.935 21 C 0.037 3.963 22 N -0.823 5.823 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.263 1.263 26 H -0.263 1.263 27 C -0.234 4.234 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.426 0.574 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.420 0.580 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.289 0.711 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.174 16.202 -1.799 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.045 3.955 3 N -0.256 5.256 4 C 0.027 3.973 5 N -0.290 5.290 6 C 0.174 3.826 7 O -0.292 6.292 8 C -0.208 4.208 9 C -0.086 4.086 10 C -0.155 4.155 11 C 0.293 3.707 12 O -0.442 6.442 13 N -0.307 5.307 14 C 0.065 3.935 15 C -0.275 4.275 16 C -0.112 4.112 17 C -0.220 4.220 18 C 0.085 3.915 19 C -0.530 4.530 20 H 0.083 0.917 21 C -0.178 4.178 22 N -0.449 5.449 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.187 1.187 26 H -0.187 1.187 27 C -0.256 4.256 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.289 0.711 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.258 0.742 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.273 16.586 -1.812 20.712 hybrid contribution -0.626 -1.195 -0.582 1.470 sum 11.646 15.390 -2.394 19.448 Atomic orbital electron populations 1.20998 0.86213 1.05021 1.05024 1.21914 0.98691 0.86786 0.88083 1.68369 1.10691 1.30226 1.16311 1.25416 0.86380 0.96619 0.88855 1.68060 1.43774 0.99415 1.17719 1.19487 0.86966 0.85892 0.90246 1.84672 1.73402 1.35141 1.35994 1.21518 0.94028 0.98050 1.07221 1.20037 1.00937 0.91635 0.95994 1.21565 1.02224 0.92442 0.99318 1.21442 0.78725 0.87582 0.82914 1.90749 1.54689 1.65846 1.32906 1.43448 1.52190 1.24991 1.10077 1.17513 0.91422 0.87422 0.97109 1.20483 1.06665 0.95934 1.04417 1.20831 0.95367 0.97031 0.97928 1.21313 1.00967 1.00178 0.99535 1.17843 0.91144 0.90211 0.92255 1.19740 1.06146 1.25989 1.01126 0.91693 1.26700 0.98451 0.93861 0.98754 1.69864 1.26347 1.27668 1.20989 0.85226 0.77175 0.79242 0.78182 1.18624 1.18725 1.18668 1.20938 1.01942 0.99016 1.03656 0.88074 0.89011 0.89201 0.75393 0.71124 0.90213 0.89472 0.86423 0.87024 0.74177 0.85287 0.86155 0.87899 0.90057 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.83 71.23 0.70 -0.92 16 2 C 0.19 3.40 6.82 42.44 0.29 3.69 16 3 N -0.54 -10.06 10.37 -188.29 -1.95 -12.01 16 4 C 0.31 5.26 12.28 180.89 2.22 7.48 16 5 N -0.56 -11.31 10.46 -312.89 -3.27 -14.58 16 6 C 0.36 7.04 7.81 84.83 0.66 7.70 16 7 O -0.48 -8.28 12.75 -88.18 -1.12 -9.41 16 8 C -0.20 -3.74 5.18 -19.59 -0.10 -3.84 16 9 C -0.05 -0.94 4.10 29.84 0.12 -0.82 16 10 C -0.12 -2.32 5.68 29.84 0.17 -2.15 16 11 C 0.50 15.98 7.56 87.66 0.66 16.64 16 12 O -0.56 -23.65 13.74 -3.06 -0.04 -23.69 16 13 N -0.66 -21.41 5.34 -303.65 -1.62 -23.03 16 14 C 0.16 6.94 6.25 38.10 0.24 7.18 16 15 C -0.25 -10.57 9.97 22.58 0.23 -10.34 16 16 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 17 C -0.20 -10.74 8.69 22.75 0.20 -10.55 16 18 C 0.09 5.02 5.57 -21.31 -0.12 4.90 16 19 C -0.50 -28.61 9.05 23.46 0.21 -28.40 16 20 H 0.06 3.71 7.90 -2.91 -0.02 3.69 16 21 C 0.04 1.94 5.16 85.25 0.44 2.38 16 22 N -0.82 -43.70 10.94 21.82 0.24 -43.46 16 23 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 27 C -0.23 -12.29 8.39 22.85 0.19 -12.10 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.26 6.07 -2.39 -0.01 1.25 16 31 H 0.23 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.43 3.54 9.06 -74.05 -0.67 2.87 16 33 H 0.08 1.72 7.59 -2.39 -0.02 1.70 16 34 H 0.09 1.83 6.02 -2.39 -0.01 1.81 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.42 9.77 8.82 -92.70 -0.82 8.95 16 38 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.10 5.74 6.16 -2.91 -0.02 5.73 16 41 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 42 H 0.09 4.85 6.48 -2.91 -0.02 4.83 16 Total: -1.00 -75.55 360.02 0.20 -75.35 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.39 Total: 32.36 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 6.34 Total: -23.15 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -6.61 Total: -93.08 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.17 Total: -33.10 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -75.55 0.20 -75.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434431604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.966 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds