Wall clock time and date at job start Tue Mar 31 2020 15:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38394 * 120.00257 * 2 1 4 4 N 1.32126 * 119.99981 * 179.97438 * 3 2 1 5 5 C 1.32147 * 119.99692 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99594 * 179.72365 * 5 4 3 7 7 C 1.53003 * 109.47262 * 304.99845 * 6 5 4 8 8 N 1.46500 * 109.47388 * 179.97438 * 7 6 5 9 9 C 1.34769 * 119.99992 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00329 * 0.02562 * 9 8 7 11 11 C 1.47539 * 119.99903 * 180.02562 * 9 8 7 12 12 C 1.39663 * 120.19736 * 359.97438 * 11 9 8 13 13 C 1.37827 * 119.91714 * 180.02562 * 12 11 9 14 14 C 1.38572 * 120.32480 * 359.97438 * 13 12 11 15 15 C 1.38021 * 120.40500 * 0.02562 * 14 13 12 16 16 C 1.38844 * 120.06914 * 359.67544 * 15 14 13 17 17 O 1.35517 * 120.16128 * 180.29729 * 16 15 14 18 18 C 1.34810 * 117.00264 * 354.40769 * 17 16 15 19 19 H 1.08001 * 119.99727 * 5.05296 * 18 17 16 20 20 C 1.38698 * 120.00264 * 185.06666 * 18 17 16 21 21 N 1.31518 * 119.99692 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47202 * 59.99512 * 22 20 18 24 24 H 1.48498 * 109.47288 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47057 * 299.99501 * 22 20 18 26 26 C 1.38341 * 120.00660 * 359.97438 * 5 4 3 27 27 N 1.32128 * 120.00290 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46922 * 90.00198 * 1 2 3 29 29 H 1.09006 * 109.46921 * 209.99913 * 1 2 3 30 30 H 1.08990 * 109.47271 * 330.00055 * 1 2 3 31 31 H 1.07996 * 119.99660 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47543 * 64.99562 * 6 5 4 33 33 H 1.09001 * 109.47313 * 184.99350 * 6 5 4 34 34 H 1.09003 * 109.46610 * 300.00288 * 7 6 5 35 35 H 1.09002 * 109.46914 * 59.99826 * 7 6 5 36 36 H 0.97000 * 119.99869 * 0.02562 * 8 7 6 37 37 H 1.07992 * 120.03931 * 359.97438 * 12 11 9 38 38 H 1.08008 * 119.83447 * 179.97438 * 13 12 11 39 39 H 1.08005 * 119.79706 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.96779 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00028 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.99996 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1984 0.0005 5 6 4.1809 0.0539 0.0005 6 6 5.6879 0.0539 -0.0052 7 6 6.1935 0.8786 -1.1906 8 7 7.6585 0.8791 -1.1958 9 6 8.3287 1.5461 -2.1562 10 8 7.7175 2.1479 -3.0180 11 6 9.8040 1.5461 -2.1617 12 6 10.5103 0.8567 -1.1735 13 6 11.8885 0.8610 -1.1839 14 6 12.5785 1.5460 -2.1712 15 6 11.8941 2.2317 -3.1542 16 6 10.5057 2.2333 -3.1632 17 8 9.8318 2.9010 -4.1310 18 6 10.5643 3.6394 -4.9887 19 1 11.6428 3.6149 -4.9374 20 6 9.9329 4.4308 -5.9367 21 7 8.6195 4.4603 -5.9993 22 14 10.9478 5.4545 -7.1246 23 1 11.8209 4.5608 -7.9272 24 1 10.0415 6.2047 -8.0308 25 1 11.7878 6.4115 -6.3606 26 6 3.4892 -1.1441 0.0005 27 7 2.1677 -1.1442 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6590 2.1338 -0.0004 32 1 6.0548 0.4903 0.9238 33 1 6.0509 -0.9701 -0.0938 34 1 5.8265 0.4422 -2.1196 35 1 5.8305 1.9026 -1.1019 36 1 8.1460 0.3988 -0.5085 37 1 9.9771 0.3217 -0.4017 38 1 12.4333 0.3278 -0.4188 39 1 13.6586 1.5434 -2.1714 40 1 12.4391 2.7636 -3.9201 41 1 8.1779 5.0135 -6.6625 42 1 4.0292 -2.0795 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436612825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:24 Heat of formation + Delta-G solvation = 10.280054 kcal Electronic energy + Delta-G solvation = -26001.131298 eV Core-core repulsion = 22140.202349 eV Total energy + Delta-G solvation = -3860.928949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40148 -39.55943 -38.10239 -36.33050 -35.77126 -34.26695 -33.26310 -32.32607 -31.29480 -30.05456 -28.90650 -27.19819 -25.37262 -24.98606 -23.98171 -22.67073 -21.76650 -21.19712 -19.88863 -18.07776 -17.97374 -17.54715 -16.53644 -16.12404 -15.98621 -15.59714 -15.14252 -14.97710 -14.63464 -14.21720 -14.16179 -13.88159 -13.76291 -13.41329 -13.32313 -12.97582 -12.83729 -12.70167 -12.49011 -12.46483 -11.92507 -11.75097 -11.70032 -11.52554 -11.29925 -11.17710 -11.11105 -10.86995 -10.78568 -10.46696 -9.56265 -9.29892 -9.25312 -8.86267 -8.81979 -8.53685 -8.25392 -7.29478 -6.42565 -4.02744 0.50277 0.91076 1.73447 2.33254 3.12638 3.14882 3.17334 3.36658 3.58743 3.77964 3.81857 3.94925 3.95378 4.21731 4.48415 4.65951 4.72657 4.88589 4.99095 5.06348 5.09015 5.19155 5.19924 5.27372 5.34112 5.42659 5.48222 5.55289 5.61483 5.73812 5.98526 6.03964 6.12585 6.13395 6.23942 6.57570 6.70555 6.92192 6.95458 7.06263 7.07196 7.25247 7.30414 7.56195 7.70820 7.93624 8.14105 8.96701 9.12826 9.69366 10.71144 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.002625 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.289200 B =10664.141963 C =12544.785854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.068 3.932 3 C 0.058 3.942 4 N -0.427 5.427 5 C 0.081 3.919 6 C -0.077 4.077 7 C 0.134 3.866 8 N -0.745 5.745 9 C 0.554 3.446 10 O -0.500 6.500 11 C -0.227 4.227 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.123 6.123 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C 0.059 3.941 27 N -0.439 5.439 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.392 0.608 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.272 0.728 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -9.773 13.819 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 C -0.102 4.102 4 N -0.141 5.141 5 C -0.059 4.059 6 C -0.116 4.116 7 C 0.009 3.991 8 N -0.402 5.402 9 C 0.343 3.657 10 O -0.373 6.373 11 C -0.231 4.231 12 C -0.057 4.057 13 C -0.251 4.251 14 C -0.070 4.070 15 C -0.257 4.257 16 C 0.129 3.871 17 O -0.021 6.021 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.101 4.101 27 N -0.154 5.154 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.187 0.813 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.226 0.774 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.182 -9.145 12.911 18.293 hybrid contribution 0.883 0.214 -0.207 0.932 sum -8.299 -8.931 12.703 17.607 Atomic orbital electron populations 1.20673 0.87709 1.03830 1.03562 1.22341 0.98537 0.89779 0.96540 1.23661 0.90556 0.99282 0.96734 1.68290 1.08666 1.29333 1.07819 1.22058 0.97635 0.89759 0.96458 1.20695 0.87993 1.02264 1.00598 1.21040 0.80675 1.00794 0.96582 1.45853 1.06008 1.56388 1.31905 1.18226 0.87436 0.78885 0.81132 1.90958 1.69185 1.41286 1.35907 1.18850 0.91795 1.11791 1.00707 1.20751 0.94185 0.95445 0.95340 1.20457 0.93791 1.08247 1.02556 1.20892 0.98667 0.94157 0.93259 1.21157 0.93750 1.07649 1.03161 1.19288 0.90187 0.90239 0.87414 1.84174 1.34134 1.50632 1.33190 1.21450 0.91195 1.23508 1.11862 0.88918 1.25387 0.96087 0.97053 0.97801 1.70122 1.07675 1.35891 1.32683 0.85797 0.78899 0.79423 0.79391 1.19379 1.20169 1.19357 1.23618 0.90512 0.99189 0.96740 1.68293 1.08700 1.29399 1.09044 0.89934 0.90260 0.90191 0.81323 0.88894 0.89170 0.92033 0.90644 0.77401 0.87028 0.87290 0.87209 0.85097 0.91811 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.19 36.00 0.37 -0.24 16 2 C 0.07 0.66 6.79 -82.41 -0.56 0.10 16 3 C 0.06 0.60 10.88 -17.37 -0.19 0.41 16 4 N -0.43 -5.37 10.06 -9.29 -0.09 -5.46 16 5 C 0.08 0.91 6.18 -82.42 -0.51 0.40 16 6 C -0.08 -0.76 5.74 -27.88 -0.16 -0.92 16 7 C 0.13 1.97 5.54 -4.04 -0.02 1.95 16 8 N -0.75 -11.90 5.51 -61.35 -0.34 -12.24 16 9 C 0.55 12.31 7.76 -12.47 -0.10 12.22 16 10 O -0.50 -13.99 15.17 -16.57 -0.25 -14.24 16 11 C -0.23 -4.94 5.89 -104.81 -0.62 -5.56 16 12 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 13 C -0.23 -3.76 10.02 -39.61 -0.40 -4.16 16 14 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 15 C -0.24 -5.13 9.16 -39.44 -0.36 -5.49 16 16 C 0.19 4.72 6.66 -38.59 -0.26 4.46 16 17 O -0.12 -3.68 7.84 -21.03 -0.16 -3.84 16 18 C -0.40 -11.55 9.49 30.90 0.29 -11.25 16 19 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 20 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -25.41 13.67 55.48 0.76 -24.65 16 22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 C 0.06 0.60 10.85 -17.38 -0.19 0.41 16 27 N -0.44 -4.84 10.42 -9.28 -0.10 -4.94 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.65 7.89 -51.93 -0.41 0.24 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 36 H 0.39 4.74 6.50 -40.82 -0.27 4.48 16 37 H 0.11 1.41 6.40 -52.49 -0.34 1.08 16 38 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.17 1.18 7.95 -52.48 -0.42 0.76 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -37.75 364.43 -8.21 -45.96 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.93 Total: 7.10 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.56 Total: -8.84 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.23 Total: -47.29 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.42 Total: -18.08 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.75 -8.21 -45.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436612825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.238 kcal (2) G-P(sol) polarization free energy of solvation -37.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds