Wall clock time and date at job start Tue Mar 31 2020 15:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38394 * 120.00257 * 2 1 4 4 N 1.32126 * 119.99981 * 179.97438 * 3 2 1 5 5 C 1.32147 * 119.99692 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99594 * 179.72365 * 5 4 3 7 7 C 1.53003 * 109.47262 * 304.99845 * 6 5 4 8 8 N 1.46500 * 109.47388 * 179.97438 * 7 6 5 9 9 C 1.34769 * 119.99992 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00329 * 0.02562 * 9 8 7 11 11 C 1.47539 * 119.99903 * 180.02562 * 9 8 7 12 12 C 1.39663 * 120.19736 * 359.97438 * 11 9 8 13 13 C 1.37827 * 119.91714 * 180.02562 * 12 11 9 14 14 C 1.38572 * 120.32480 * 359.97438 * 13 12 11 15 15 C 1.38021 * 120.40500 * 0.02562 * 14 13 12 16 16 C 1.38844 * 120.06914 * 359.67544 * 15 14 13 17 17 O 1.35517 * 120.16128 * 180.29729 * 16 15 14 18 18 C 1.34810 * 117.00264 * 354.40769 * 17 16 15 19 19 H 1.08001 * 119.99727 * 5.05296 * 18 17 16 20 20 C 1.38698 * 120.00264 * 185.06666 * 18 17 16 21 21 N 1.31518 * 119.99692 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00221 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47202 * 59.99512 * 22 20 18 24 24 H 1.48498 * 109.47288 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47057 * 299.99501 * 22 20 18 26 26 C 1.38341 * 120.00660 * 359.97438 * 5 4 3 27 27 N 1.32128 * 120.00290 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46922 * 90.00198 * 1 2 3 29 29 H 1.09006 * 109.46921 * 209.99913 * 1 2 3 30 30 H 1.08990 * 109.47271 * 330.00055 * 1 2 3 31 31 H 1.07996 * 119.99660 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.47543 * 64.99562 * 6 5 4 33 33 H 1.09001 * 109.47313 * 184.99350 * 6 5 4 34 34 H 1.09003 * 109.46610 * 300.00288 * 7 6 5 35 35 H 1.09002 * 109.46914 * 59.99826 * 7 6 5 36 36 H 0.97000 * 119.99869 * 0.02562 * 8 7 6 37 37 H 1.07992 * 120.03931 * 359.97438 * 12 11 9 38 38 H 1.08008 * 119.83447 * 179.97438 * 13 12 11 39 39 H 1.08005 * 119.79706 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.96779 * 179.97438 * 15 14 13 41 41 H 0.96999 * 120.00028 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.99996 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5203 1.1984 0.0005 5 6 4.1809 0.0539 0.0005 6 6 5.6879 0.0539 -0.0052 7 6 6.1935 0.8786 -1.1906 8 7 7.6585 0.8791 -1.1958 9 6 8.3287 1.5461 -2.1562 10 8 7.7175 2.1479 -3.0180 11 6 9.8040 1.5461 -2.1617 12 6 10.5103 0.8567 -1.1735 13 6 11.8885 0.8610 -1.1839 14 6 12.5785 1.5460 -2.1712 15 6 11.8941 2.2317 -3.1542 16 6 10.5057 2.2333 -3.1632 17 8 9.8318 2.9010 -4.1310 18 6 10.5643 3.6394 -4.9887 19 1 11.6428 3.6149 -4.9374 20 6 9.9329 4.4308 -5.9367 21 7 8.6195 4.4603 -5.9993 22 14 10.9478 5.4545 -7.1246 23 1 11.8209 4.5608 -7.9272 24 1 10.0415 6.2047 -8.0308 25 1 11.7878 6.4115 -6.3606 26 6 3.4892 -1.1441 0.0005 27 7 2.1677 -1.1442 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6590 2.1338 -0.0004 32 1 6.0548 0.4903 0.9238 33 1 6.0509 -0.9701 -0.0938 34 1 5.8265 0.4422 -2.1196 35 1 5.8305 1.9026 -1.1019 36 1 8.1460 0.3988 -0.5085 37 1 9.9771 0.3217 -0.4017 38 1 12.4333 0.3278 -0.4188 39 1 13.6586 1.5434 -2.1714 40 1 12.4391 2.7636 -3.9201 41 1 8.1779 5.0135 -6.6625 42 1 4.0292 -2.0795 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436612825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:23 Heat of formation + Delta-G solvation = -18.082517 kcal Electronic energy + Delta-G solvation = -26002.361192 eV Core-core repulsion = 22140.202349 eV Total energy + Delta-G solvation = -3862.158842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.17631 -41.25802 -39.82490 -38.01745 -36.89911 -35.38244 -34.33725 -34.16679 -32.56909 -31.24684 -30.55029 -28.16038 -27.32434 -25.77405 -25.14396 -24.02225 -23.02842 -22.50310 -21.49619 -19.84381 -19.27563 -18.77673 -17.89499 -17.35557 -16.96396 -16.58101 -16.51449 -16.32547 -16.11304 -15.85859 -15.62830 -15.52757 -15.27854 -14.66487 -14.41563 -14.20781 -14.11448 -13.81680 -13.54816 -13.47962 -13.18327 -12.99795 -12.94359 -12.67072 -12.56963 -12.53803 -12.45769 -12.33933 -12.14819 -12.07628 -11.43151 -10.82514 -10.66176 -10.14574 -10.03847 -9.98943 -9.76655 -9.02337 -8.44471 -6.15726 -0.25486 0.11549 0.14070 0.74664 1.31476 1.44846 1.49712 2.10643 2.15848 2.21049 2.65326 2.88281 3.08110 3.22949 3.23769 3.45721 3.48916 3.76973 3.87134 4.01437 4.07980 4.11887 4.17835 4.27746 4.31218 4.52663 4.54135 4.57250 4.66993 4.74607 4.83211 4.93956 4.96131 5.02342 5.08015 5.10760 5.16368 5.43671 5.49993 5.51579 5.62837 5.71585 5.96162 6.19293 6.30490 6.71933 6.79492 6.94653 7.49902 7.81295 8.76046 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.002625 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.289200 B =10664.141963 C =12544.785854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.067 3.933 3 C 0.044 3.956 4 N -0.463 5.463 5 C 0.062 3.938 6 C -0.060 4.060 7 C 0.137 3.863 8 N -0.714 5.714 9 C 0.546 3.454 10 O -0.572 6.572 11 C -0.245 4.245 12 C -0.028 4.028 13 C -0.200 4.200 14 C -0.040 4.040 15 C -0.259 4.259 16 C 0.146 3.854 17 O -0.190 6.190 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.024 4.024 21 N -0.907 5.907 22 Si 1.023 2.977 23 H -0.253 1.253 24 H -0.274 1.274 25 H -0.254 1.254 26 C 0.061 3.939 27 N -0.461 5.461 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.190 0.810 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.416 0.584 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.270 0.730 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 -12.426 17.227 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.073 4.073 3 C -0.116 4.116 4 N -0.178 5.178 5 C -0.078 4.078 6 C -0.098 4.098 7 C 0.012 3.988 8 N -0.370 5.370 9 C 0.336 3.664 10 O -0.451 6.451 11 C -0.250 4.250 12 C -0.046 4.046 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.278 4.278 16 C 0.091 3.909 17 O -0.093 6.093 18 C -0.504 4.504 19 H 0.125 0.875 20 C -0.223 4.223 21 N -0.543 5.543 22 Si 0.841 3.159 23 H -0.177 1.177 24 H -0.199 1.199 25 H -0.178 1.178 26 C -0.098 4.098 27 N -0.176 5.176 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.207 0.793 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.255 0.745 37 H 0.183 0.817 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.805 -11.883 16.435 21.392 hybrid contribution 0.255 0.740 -0.853 1.157 sum -6.550 -11.143 15.582 20.245 Atomic orbital electron populations 1.20783 0.85307 1.05103 1.04316 1.22870 1.00143 0.89277 0.95047 1.24070 0.90123 1.00619 0.96803 1.68251 1.10055 1.30692 1.08826 1.22262 0.98124 0.89953 0.97474 1.20652 0.87376 1.03360 0.98460 1.21006 0.79582 0.99946 0.98223 1.45526 1.06617 1.54377 1.30495 1.18599 0.88112 0.78480 0.81209 1.90940 1.70540 1.44596 1.39068 1.19301 0.91906 1.12278 1.01471 1.21344 0.95064 0.93763 0.94430 1.21201 0.93519 1.05209 1.01885 1.21446 1.00948 0.91907 0.91547 1.21300 0.92512 1.09179 1.04818 1.20140 0.92205 0.90639 0.87900 1.84181 1.35690 1.53681 1.35721 1.22009 0.92021 1.24004 1.12347 0.87545 1.26786 0.97334 0.98329 0.99830 1.70328 1.10261 1.38771 1.34942 0.84618 0.77107 0.77596 0.76606 1.17692 1.19865 1.17775 1.24079 0.90447 0.99921 0.95366 1.68383 1.09293 1.30007 1.09955 0.89254 0.89971 0.87942 0.79316 0.87255 0.85349 0.94259 0.93917 0.74544 0.81702 0.81631 0.82872 0.86006 0.92083 0.78234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.19 71.24 0.73 -0.33 16 2 C 0.07 1.24 6.79 42.55 0.29 1.53 16 3 C 0.04 0.90 10.88 84.69 0.92 1.82 16 4 N -0.46 -11.84 10.06 -183.30 -1.84 -13.68 16 5 C 0.06 1.33 6.18 42.54 0.26 1.59 16 6 C -0.06 -1.07 5.74 29.85 0.17 -0.90 16 7 C 0.14 4.12 5.54 86.38 0.48 4.60 16 8 N -0.71 -22.23 5.51 -466.26 -2.57 -24.79 16 9 C 0.55 25.18 7.76 86.70 0.67 25.85 16 10 O -0.57 -34.90 15.17 16.88 0.26 -34.65 16 11 C -0.24 -10.64 5.89 -19.99 -0.12 -10.76 16 12 C -0.03 -0.81 9.54 22.52 0.21 -0.59 16 13 C -0.20 -5.15 10.02 22.25 0.22 -4.93 16 14 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 15 C -0.26 -11.12 9.16 22.36 0.20 -10.91 16 16 C 0.15 7.63 6.66 22.91 0.15 7.78 16 17 O -0.19 -12.32 7.84 0.92 0.01 -12.31 16 18 C -0.43 -26.31 9.49 67.93 0.64 -25.66 16 19 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 20 C -0.02 -1.44 5.49 84.85 0.47 -0.97 16 21 N -0.91 -60.54 13.67 21.62 0.30 -60.25 16 22 Si 1.02 44.91 29.55 68.60 2.03 46.94 16 23 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 26 C 0.06 1.13 10.85 84.67 0.92 2.05 16 27 N -0.46 -9.66 10.42 -183.29 -1.91 -11.57 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 31 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.13 1.30 7.89 -2.39 -0.02 1.28 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.58 7.96 -2.39 -0.02 1.56 16 36 H 0.42 8.50 6.50 -92.71 -0.60 7.90 16 37 H 0.17 2.98 6.40 -2.91 -0.02 2.96 16 38 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 41 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 42 H 0.20 2.18 7.95 -2.91 -0.02 2.15 16 Total: -1.00 -97.69 364.43 3.19 -94.50 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.47 Total: 26.65 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 6.45 Total: -10.84 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -6.03 Total: -110.29 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: 0.26 Total: -46.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -97.69 3.19 -94.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436612825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.419 kcal (2) G-P(sol) polarization free energy of solvation -97.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds