Wall clock time and date at job start Tue Mar 31 2020 15:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30527 * 119.69864 * 2 1 4 4 N 1.28265 * 122.98481 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.02908 * 180.27756 * 4 3 2 6 6 C 1.34686 * 121.94150 * 359.97438 * 4 3 2 7 7 O 1.21903 * 120.46877 * 180.02562 * 6 4 3 8 8 C 1.42335 * 119.05706 * 0.02562 * 6 4 3 9 9 C 1.47380 * 121.29793 * 180.02562 * 8 6 4 10 10 O 1.21618 * 119.99772 * 174.05040 * 9 8 6 11 11 N 1.34776 * 120.00269 * 354.04754 * 9 8 6 12 12 C 1.39847 * 119.99955 * 184.99795 * 11 9 8 13 13 C 1.39319 * 119.94936 * 142.13907 * 12 11 9 14 14 C 1.38476 * 120.42619 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.32731 * 359.97438 * 14 13 12 16 16 C 1.40748 * 119.89119 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21052 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99285 * 146.44253 * 17 16 15 19 19 C 1.39919 * 120.00419 * 326.44836 * 17 16 15 20 20 N 1.30829 * 120.00045 * 1.24498 * 19 17 16 21 21 Si 1.86800 * 120.00353 * 181.24647 * 19 17 16 22 22 H 1.48506 * 109.47027 * 94.99385 * 21 19 17 23 23 H 1.48499 * 109.47671 * 214.99187 * 21 19 17 24 24 H 1.48499 * 109.46877 * 334.99961 * 21 19 17 25 25 C 1.38258 * 119.95061 * 321.85410 * 12 11 9 26 26 C 1.39333 * 117.40273 * 359.97438 * 8 6 4 27 27 C 1.50694 * 120.99261 * 180.02562 * 26 8 6 28 28 H 1.08997 * 109.46852 * 270.02508 * 1 2 3 29 29 H 1.08998 * 109.47338 * 30.01931 * 1 2 3 30 30 H 1.08995 * 109.47282 * 150.02715 * 1 2 3 31 31 H 1.09007 * 109.46839 * 269.72138 * 5 4 3 32 32 H 1.08991 * 109.47391 * 29.72761 * 5 4 3 33 33 H 1.09004 * 109.46987 * 149.72779 * 5 4 3 34 34 H 0.97000 * 119.99749 * 5.00007 * 11 9 8 35 35 H 1.07998 * 119.78410 * 359.96797 * 13 12 11 36 36 H 1.08005 * 119.83336 * 180.02562 * 14 13 12 37 37 H 1.08004 * 120.06015 * 180.02562 * 15 14 13 38 38 H 0.97002 * 120.00193 * 180.02562 * 20 19 17 39 39 H 1.07997 * 120.16762 * 0.02763 * 25 12 11 40 40 H 1.08993 * 109.47533 * 84.38620 * 27 26 8 41 41 H 1.09002 * 109.47353 * 204.39019 * 27 26 8 42 42 H 1.09002 * 109.47208 * 324.38506 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1338 0.0000 4 7 3.4343 1.2073 0.0005 5 6 4.0706 2.5270 0.0066 6 6 4.2112 0.1071 0.0015 7 8 5.4260 0.2083 0.0024 8 6 3.5936 -1.1752 0.0016 9 6 4.3960 -2.4115 0.0033 10 8 3.8482 -3.4918 0.1125 11 7 5.7368 -2.3448 -0.1162 12 6 6.4888 -3.5193 -0.2198 13 6 7.5949 -3.5646 -1.0657 14 6 8.3468 -4.7223 -1.1754 15 6 8.0094 -5.8419 -0.4486 16 6 6.8946 -5.8112 0.4100 17 6 6.5417 -6.9574 1.1592 18 1 6.1086 -6.8474 2.1425 19 6 6.7537 -8.2338 0.6267 20 7 7.3008 -8.3675 -0.5541 21 14 6.2554 -9.7472 1.6018 22 1 4.8999 -10.1835 1.1803 23 1 7.2279 -10.8408 1.3500 24 1 6.2420 -9.4204 3.0504 25 6 6.1370 -4.6318 0.5218 26 6 2.2009 -1.2163 0.0011 27 6 1.4633 -2.5304 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 4.2330 2.8568 -1.0196 32 1 3.4246 3.2395 0.5194 33 1 5.0278 2.4663 0.5245 34 1 6.1801 -1.4822 -0.1303 35 1 7.8675 -2.6913 -1.6395 36 1 9.2027 -4.7467 -1.8337 37 1 8.5992 -6.7424 -0.5372 38 1 7.4474 -9.2524 -0.9234 39 1 5.2823 -4.5966 1.1810 40 1 1.3727 -2.8958 1.0245 41 1 0.4694 -2.3894 -0.4232 42 1 2.0142 -3.2565 -0.5961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460141183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:42 Heat of formation + Delta-G solvation = 23.780233 kcal Electronic energy + Delta-G solvation = -27287.158216 eV Core-core repulsion = 23426.814679 eV Total energy + Delta-G solvation = -3860.343537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38163 -39.60084 -38.33472 -37.26062 -35.90284 -34.33501 -32.89089 -32.48129 -30.87944 -29.72039 -28.59944 -27.88723 -26.55009 -25.20568 -24.65737 -22.47349 -21.58179 -20.71776 -20.04765 -18.68398 -17.87170 -17.29688 -17.08443 -16.44385 -15.86552 -15.35576 -14.95886 -14.72787 -14.46962 -14.36375 -14.15169 -13.94606 -13.57505 -13.48564 -13.10970 -13.05173 -12.88302 -12.72381 -12.64620 -12.30861 -12.06572 -11.96269 -11.66813 -11.49480 -11.13134 -11.05329 -10.57997 -10.40242 -10.09182 -10.07850 -9.98575 -9.70205 -9.30891 -9.03705 -8.75968 -8.68862 -7.29744 -6.79811 -6.50903 -4.29052 -0.02689 1.29244 1.89417 2.57712 2.88196 3.07412 3.15534 3.20760 3.27014 3.52502 3.63636 3.78401 4.06524 4.25329 4.43675 4.60258 4.79073 4.84654 4.89266 4.95992 5.16508 5.20916 5.25266 5.36397 5.44840 5.57253 5.63316 5.70542 5.76784 5.91980 6.31094 6.34323 6.48015 6.91778 7.11227 7.13543 7.16719 7.30853 7.39879 7.66234 7.79760 7.84548 8.07139 8.18210 8.31742 8.35137 8.74026 8.83814 9.04795 9.07405 10.40294 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.003216 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.109993 B = 8705.731198 C = 9955.951370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.057 3.943 3 N -0.212 5.212 4 N -0.343 5.343 5 C 0.080 3.920 6 C 0.495 3.505 7 O -0.526 6.526 8 C -0.222 4.222 9 C 0.563 3.437 10 O -0.511 6.511 11 N -0.651 5.651 12 C 0.141 3.859 13 C -0.245 4.245 14 C -0.100 4.100 15 C -0.159 4.159 16 C 0.113 3.887 17 C -0.460 4.460 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.813 5.813 21 Si 0.914 3.086 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.197 4.197 26 C 0.039 3.961 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.413 0.587 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.276 0.724 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.675 17.856 0.204 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 N -0.037 5.037 4 N -0.162 5.162 5 C -0.059 4.059 6 C 0.294 3.706 7 O -0.404 6.404 8 C -0.237 4.237 9 C 0.350 3.650 10 O -0.388 6.388 11 N -0.302 5.302 12 C 0.049 3.951 13 C -0.266 4.266 14 C -0.119 4.119 15 C -0.179 4.179 16 C 0.110 3.890 17 C -0.491 4.491 18 H 0.093 0.907 19 C -0.144 4.144 20 N -0.440 5.440 21 Si 0.739 3.261 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.218 4.218 26 C 0.032 3.968 27 C -0.189 4.189 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.257 0.743 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.312 17.993 0.107 21.803 hybrid contribution 0.291 -0.854 0.201 0.925 sum -12.021 17.139 0.309 20.937 Atomic orbital electron populations 1.20639 0.85740 1.04390 1.03957 1.21760 0.98173 0.86697 1.04630 1.70622 0.95047 1.28964 1.09075 1.46509 1.01997 1.09936 1.57807 1.22197 0.99370 0.79805 1.04577 1.17920 0.88096 0.84917 0.79679 1.90712 1.12210 1.85196 1.52282 1.21622 0.94429 0.93923 1.13687 1.17305 0.82541 0.86892 0.78305 1.90801 1.70954 1.28220 1.48837 1.43847 1.05712 1.10504 1.70173 1.17493 0.93298 0.86083 0.98253 1.20177 1.01466 0.98828 1.06146 1.20535 0.98444 0.93356 0.99527 1.21589 0.98273 0.97372 1.00684 1.17550 0.89070 0.91230 0.91144 1.19495 1.36652 0.89976 1.02972 0.90732 1.25837 0.93193 1.00600 0.94751 1.69771 1.34080 1.24948 1.15241 0.86207 0.78898 0.80292 0.80662 1.19680 1.20344 1.18720 1.21170 1.02102 0.94134 1.04430 1.21658 0.92441 0.97547 0.85180 1.21335 0.99612 0.92791 1.05193 0.89745 0.90024 0.89263 0.89948 0.88638 0.87997 0.74322 0.89238 0.88936 0.85432 0.91293 0.87240 0.88505 0.90586 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 9.80 36.01 0.35 -0.14 16 2 C 0.06 0.56 6.87 -82.47 -0.57 0.00 16 3 N -0.21 -2.23 10.77 33.66 0.36 -1.86 16 4 N -0.34 -4.00 3.62 -69.81 -0.25 -4.25 16 5 C 0.08 0.62 10.58 59.85 0.63 1.26 16 6 C 0.49 7.46 7.50 -14.73 -0.11 7.35 16 7 O -0.53 -8.90 13.42 5.01 0.07 -8.83 16 8 C -0.22 -3.55 5.95 -104.20 -0.62 -4.17 16 9 C 0.56 11.41 7.55 -12.54 -0.09 11.31 16 10 O -0.51 -11.43 11.21 5.26 0.06 -11.37 16 11 N -0.65 -14.01 5.25 -10.89 -0.06 -14.06 16 12 C 0.14 3.48 6.24 -83.79 -0.52 2.96 16 13 C -0.24 -5.87 9.97 -39.09 -0.39 -6.26 16 14 C -0.10 -2.45 10.01 -39.70 -0.40 -2.85 16 15 C -0.16 -4.34 8.66 -38.84 -0.34 -4.68 16 16 C 0.11 3.20 5.55 -106.85 -0.59 2.61 16 17 C -0.46 -12.94 9.05 -37.75 -0.34 -13.28 16 18 H 0.07 2.03 7.85 -52.48 -0.41 1.62 16 19 C 0.07 1.87 5.40 -17.35 -0.09 1.78 16 20 N -0.81 -22.04 10.63 55.55 0.59 -21.45 16 21 Si 0.91 19.81 29.56 -169.99 -5.02 14.79 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.20 -5.33 8.42 -38.68 -0.33 -5.65 16 26 C 0.04 0.49 5.98 -103.55 -0.62 -0.13 16 27 C -0.13 -1.50 8.61 36.00 0.31 -1.19 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.38 5.99 -51.93 -0.31 0.07 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.09 0.51 8.13 -51.93 -0.42 0.08 16 33 H 0.10 0.82 7.37 -51.93 -0.38 0.44 16 34 H 0.41 8.31 5.56 -40.82 -0.23 8.08 16 35 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.09 2.00 8.06 -52.48 -0.42 1.58 16 37 H 0.13 3.56 6.15 -52.48 -0.32 3.24 16 38 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 39 H 0.11 3.00 6.43 -52.49 -0.34 2.66 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.56 5.88 -51.93 -0.31 0.26 16 42 H 0.11 1.63 5.96 -51.93 -0.31 1.32 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -33.52 348.22 -7.42 -40.95 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.70 Total: 11.92 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -3.72 Total: -11.09 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.64 Total: -41.62 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.13 Total: -20.20 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.52 -7.42 -40.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460141183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.728 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds