Wall clock time and date at job start Tue Mar 31 2020 15:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30527 * 119.69864 * 2 1 4 4 N 1.28265 * 122.98481 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.02908 * 180.27756 * 4 3 2 6 6 C 1.34686 * 121.94150 * 359.97438 * 4 3 2 7 7 O 1.21903 * 120.46877 * 180.02562 * 6 4 3 8 8 C 1.42335 * 119.05706 * 0.02562 * 6 4 3 9 9 C 1.47380 * 121.29793 * 180.02562 * 8 6 4 10 10 O 1.21618 * 119.99772 * 174.05040 * 9 8 6 11 11 N 1.34776 * 120.00269 * 354.04754 * 9 8 6 12 12 C 1.39847 * 119.99955 * 184.99795 * 11 9 8 13 13 C 1.39319 * 119.94936 * 142.13907 * 12 11 9 14 14 C 1.38476 * 120.42619 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.32731 * 359.97438 * 14 13 12 16 16 C 1.40748 * 119.89119 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21052 * 179.97438 * 16 15 14 18 18 H 1.08009 * 119.99285 * 146.44253 * 17 16 15 19 19 C 1.39919 * 120.00419 * 326.44836 * 17 16 15 20 20 N 1.30829 * 120.00045 * 1.24498 * 19 17 16 21 21 Si 1.86800 * 120.00353 * 181.24647 * 19 17 16 22 22 H 1.48506 * 109.47027 * 94.99385 * 21 19 17 23 23 H 1.48499 * 109.47671 * 214.99187 * 21 19 17 24 24 H 1.48499 * 109.46877 * 334.99961 * 21 19 17 25 25 C 1.38258 * 119.95061 * 321.85410 * 12 11 9 26 26 C 1.39333 * 117.40273 * 359.97438 * 8 6 4 27 27 C 1.50694 * 120.99261 * 180.02562 * 26 8 6 28 28 H 1.08997 * 109.46852 * 270.02508 * 1 2 3 29 29 H 1.08998 * 109.47338 * 30.01931 * 1 2 3 30 30 H 1.08995 * 109.47282 * 150.02715 * 1 2 3 31 31 H 1.09007 * 109.46839 * 269.72138 * 5 4 3 32 32 H 1.08991 * 109.47391 * 29.72761 * 5 4 3 33 33 H 1.09004 * 109.46987 * 149.72779 * 5 4 3 34 34 H 0.97000 * 119.99749 * 5.00007 * 11 9 8 35 35 H 1.07998 * 119.78410 * 359.96797 * 13 12 11 36 36 H 1.08005 * 119.83336 * 180.02562 * 14 13 12 37 37 H 1.08004 * 120.06015 * 180.02562 * 15 14 13 38 38 H 0.97002 * 120.00193 * 180.02562 * 20 19 17 39 39 H 1.07997 * 120.16762 * 0.02763 * 25 12 11 40 40 H 1.08993 * 109.47533 * 84.38620 * 27 26 8 41 41 H 1.09002 * 109.47353 * 204.39019 * 27 26 8 42 42 H 1.09002 * 109.47208 * 324.38506 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1338 0.0000 4 7 3.4343 1.2073 0.0005 5 6 4.0706 2.5270 0.0066 6 6 4.2112 0.1071 0.0015 7 8 5.4260 0.2083 0.0024 8 6 3.5936 -1.1752 0.0016 9 6 4.3960 -2.4115 0.0033 10 8 3.8482 -3.4918 0.1125 11 7 5.7368 -2.3448 -0.1162 12 6 6.4888 -3.5193 -0.2198 13 6 7.5949 -3.5646 -1.0657 14 6 8.3468 -4.7223 -1.1754 15 6 8.0094 -5.8419 -0.4486 16 6 6.8946 -5.8112 0.4100 17 6 6.5417 -6.9574 1.1592 18 1 6.1086 -6.8474 2.1425 19 6 6.7537 -8.2338 0.6267 20 7 7.3008 -8.3675 -0.5541 21 14 6.2554 -9.7472 1.6018 22 1 4.8999 -10.1835 1.1803 23 1 7.2279 -10.8408 1.3500 24 1 6.2420 -9.4204 3.0504 25 6 6.1370 -4.6318 0.5218 26 6 2.2009 -1.2163 0.0011 27 6 1.4633 -2.5304 0.0017 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 4.2330 2.8568 -1.0196 32 1 3.4246 3.2395 0.5194 33 1 5.0278 2.4663 0.5245 34 1 6.1801 -1.4822 -0.1303 35 1 7.8675 -2.6913 -1.6395 36 1 9.2027 -4.7467 -1.8337 37 1 8.5992 -6.7424 -0.5372 38 1 7.4474 -9.2524 -0.9234 39 1 5.2823 -4.5966 1.1810 40 1 1.3727 -2.8958 1.0245 41 1 0.4694 -2.3894 -0.4232 42 1 2.0142 -3.2565 -0.5961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460141183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:41 Heat of formation + Delta-G solvation = 1.907742 kcal Electronic energy + Delta-G solvation = -27288.106678 eV Core-core repulsion = 23426.814679 eV Total energy + Delta-G solvation = -3861.292000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.38937 -41.19987 -39.41299 -39.10844 -36.96698 -36.16705 -34.79567 -33.48144 -31.77496 -31.74431 -30.07955 -29.02246 -27.42623 -27.24375 -25.80038 -23.48951 -23.21805 -22.64696 -21.65837 -19.91844 -19.58029 -18.55532 -18.03784 -17.79139 -17.22265 -17.15543 -16.61605 -16.47493 -16.17123 -15.56162 -15.12873 -14.97406 -14.92937 -14.72514 -14.51350 -14.22160 -14.03096 -13.80260 -13.75214 -13.60771 -13.46390 -13.02955 -12.91298 -12.89386 -12.67632 -12.51556 -12.50184 -12.22150 -11.93395 -11.63295 -11.32308 -11.08541 -11.03690 -10.84933 -10.55256 -9.69077 -9.35634 -8.76171 -8.51074 -6.41962 -1.10100 0.30645 0.85153 0.95924 1.01725 1.37221 1.46717 1.52276 1.59719 2.11632 2.23698 2.32770 2.72610 2.77571 3.22136 3.42639 3.58230 3.67237 3.98399 4.24870 4.28719 4.33824 4.41388 4.45359 4.54895 4.60452 4.67373 4.72080 4.78447 4.92025 5.00786 5.06501 5.07870 5.10824 5.18040 5.27817 5.34555 5.46295 5.74726 5.82384 6.03086 6.11682 6.22334 6.32929 6.57977 6.67644 6.86624 6.94557 6.98936 7.21471 8.42127 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.003216 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.109993 B = 8705.731198 C = 9955.951370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.060 3.940 3 N -0.198 5.198 4 N -0.337 5.337 5 C 0.072 3.928 6 C 0.489 3.511 7 O -0.557 6.557 8 C -0.268 4.268 9 C 0.559 3.441 10 O -0.542 6.542 11 N -0.655 5.655 12 C 0.144 3.856 13 C -0.245 4.245 14 C -0.094 4.094 15 C -0.183 4.183 16 C 0.086 3.914 17 C -0.499 4.499 18 H 0.067 0.933 19 C 0.029 3.971 20 N -0.840 5.840 21 Si 0.991 3.009 22 H -0.265 1.265 23 H -0.262 1.262 24 H -0.260 1.260 25 C -0.220 4.220 26 C 0.067 3.933 27 C -0.134 4.134 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.419 0.581 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.286 0.714 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.064 19.471 -0.096 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 N -0.024 5.024 4 N -0.156 5.156 5 C -0.066 4.066 6 C 0.289 3.711 7 O -0.438 6.438 8 C -0.282 4.282 9 C 0.348 3.652 10 O -0.421 6.421 11 N -0.308 5.308 12 C 0.051 3.949 13 C -0.266 4.266 14 C -0.113 4.113 15 C -0.203 4.203 16 C 0.083 3.917 17 C -0.530 4.530 18 H 0.085 0.915 19 C -0.183 4.183 20 N -0.467 5.467 21 Si 0.811 3.189 22 H -0.190 1.190 23 H -0.186 1.186 24 H -0.184 1.184 25 C -0.241 4.241 26 C 0.059 3.941 27 C -0.190 4.190 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.265 0.735 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.721 19.681 -0.204 24.578 hybrid contribution 0.879 -1.184 0.246 1.495 sum -13.842 18.497 0.042 23.102 Atomic orbital electron populations 1.20883 0.81979 1.06103 1.05689 1.22454 1.00154 0.85107 1.03159 1.70798 0.94211 1.28978 1.08403 1.46732 1.02240 1.10239 1.56354 1.22535 0.99660 0.78372 1.06014 1.17836 0.87929 0.85496 0.79824 1.90662 1.13319 1.85599 1.54236 1.21291 0.95498 0.92683 1.18719 1.17942 0.82192 0.88209 0.76837 1.90783 1.71356 1.29997 1.50004 1.43914 1.06366 1.09611 1.70868 1.17651 0.93557 0.86585 0.97127 1.20516 1.00745 0.99633 1.05668 1.20863 0.99081 0.92516 0.98852 1.21553 0.98531 0.98076 1.02173 1.17890 0.89841 0.91927 0.92023 1.19725 1.38619 0.91405 1.03268 0.91453 1.26753 0.92560 1.03276 0.95729 1.69833 1.34162 1.26312 1.16398 0.85074 0.78874 0.76026 0.78920 1.19037 1.18572 1.18403 1.21112 1.02193 0.95203 1.05642 1.22020 0.91189 0.99318 0.81600 1.21388 1.01350 0.91249 1.04979 0.87832 0.88319 0.87545 0.88386 0.85659 0.88578 0.73543 0.86306 0.85698 0.86627 0.90377 0.88864 0.88188 0.85811 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 9.80 71.24 0.70 0.14 16 2 C 0.06 0.99 6.87 43.19 0.30 1.29 16 3 N -0.20 -3.56 10.77 -47.43 -0.51 -4.07 16 4 N -0.34 -7.25 3.62 -492.97 -1.78 -9.03 16 5 C 0.07 0.97 10.58 127.77 1.35 2.32 16 6 C 0.49 14.69 7.50 85.27 0.64 15.33 16 7 O -0.56 -19.21 13.42 -5.00 -0.07 -19.28 16 8 C -0.27 -8.67 5.95 -19.59 -0.12 -8.79 16 9 C 0.56 23.73 7.55 86.65 0.65 24.38 16 10 O -0.54 -25.74 11.21 -4.09 -0.05 -25.78 16 11 N -0.65 -29.35 5.25 -306.63 -1.61 -30.96 16 12 C 0.14 7.39 6.24 38.13 0.24 7.63 16 13 C -0.24 -11.80 9.97 22.59 0.23 -11.58 16 14 C -0.09 -4.68 10.01 22.19 0.22 -4.46 16 15 C -0.18 -10.38 8.66 22.75 0.20 -10.18 16 16 C 0.09 5.14 5.55 -21.31 -0.12 5.02 16 17 C -0.50 -29.61 9.05 23.46 0.21 -29.40 16 18 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 19 C 0.03 1.57 5.40 85.25 0.46 2.03 16 20 N -0.84 -46.67 10.63 21.82 0.23 -46.44 16 21 Si 0.99 41.28 29.56 68.60 2.03 43.31 16 22 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 C -0.22 -12.62 8.42 22.86 0.19 -12.43 16 26 C 0.07 1.58 5.98 -19.17 -0.11 1.47 16 27 C -0.13 -2.84 8.61 71.23 0.61 -2.22 16 28 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 0.35 5.99 -2.39 -0.01 0.33 16 31 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.13 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.10 1.44 7.37 -2.39 -0.02 1.42 16 34 H 0.42 17.46 5.56 -92.71 -0.52 16.94 16 35 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 37 H 0.12 6.73 6.15 -2.91 -0.02 6.71 16 38 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 39 H 0.09 5.52 6.43 -2.91 -0.02 5.50 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.12 1.38 5.88 -2.39 -0.01 1.37 16 42 H 0.08 2.28 5.96 -2.39 -0.01 2.27 16 Total: -1.00 -78.60 348.22 4.47 -74.14 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.57 Total: 37.57 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 5.65 Total: -19.45 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.67 Total: -90.50 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.11 Total: -45.06 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -78.60 4.47 -74.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460141183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.045 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds