Wall clock time and date at job start Tue Mar 31 2020 14:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38667 * 120.78764 * 2 1 4 4 C 1.38186 * 119.16511 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.75789 * 0.02562 * 4 3 2 6 6 C 1.31849 * 121.73185 * 359.68640 * 5 4 3 7 7 C 1.38226 * 120.76216 * 0.57675 * 6 5 4 8 8 C 1.50699 * 120.42309 * 179.72983 * 7 6 5 9 9 N 1.46501 * 109.47325 * 259.72659 * 8 7 6 10 10 C 1.34778 * 120.00217 * 179.71900 * 9 8 7 11 11 O 1.21588 * 119.99659 * 0.28187 * 10 9 8 12 12 N 1.34769 * 120.00183 * 180.27122 * 10 9 8 13 13 C 1.40031 * 120.00032 * 175.49505 * 12 10 9 14 14 C 1.38908 * 120.00368 * 214.85238 * 13 12 10 15 15 C 1.38005 * 120.00017 * 179.81229 * 14 13 12 16 16 C 1.38897 * 120.00031 * 0.44857 * 15 14 13 17 17 O 1.35783 * 120.00097 * 179.76575 * 16 15 14 18 18 C 1.34817 * 117.00103 * 185.36045 * 17 16 15 19 19 H 1.07999 * 119.99883 * 354.97120 * 18 17 16 20 20 C 1.38633 * 119.99766 * 174.95958 * 18 17 16 21 21 N 1.31573 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99626 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47492 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47141 * 120.00686 * 22 20 18 25 25 H 1.48503 * 109.47337 * 240.00375 * 22 20 18 26 26 C 1.38906 * 120.00295 * 359.78323 * 16 15 14 27 27 C 1.38006 * 119.99717 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47244 * 269.97840 * 1 2 3 29 29 H 1.08996 * 109.47254 * 29.98220 * 1 2 3 30 30 H 1.09001 * 109.46787 * 149.98190 * 1 2 3 31 31 H 1.08005 * 120.41814 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.62035 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.62366 * 180.28655 * 6 5 4 34 34 H 1.08999 * 109.47498 * 139.72784 * 8 7 6 35 35 H 1.09001 * 109.46803 * 19.72318 * 8 7 6 36 36 H 0.97004 * 120.00058 * 0.02562 * 9 8 7 37 37 H 0.97001 * 119.99988 * 355.50155 * 12 10 9 38 38 H 1.08010 * 119.99938 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.99923 * 180.19356 * 15 14 13 40 40 H 0.97005 * 120.00001 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.99788 * 179.97438 * 26 16 15 42 42 H 1.08000 * 119.99891 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5984 -1.1515 0.0040 7 6 2.2167 -1.1909 -0.0007 8 6 1.4909 -2.5116 -0.0004 9 7 1.0446 -2.8239 -1.3604 10 6 0.3737 -3.9672 -1.6036 11 8 0.1344 -4.7370 -0.6933 12 7 -0.0321 -4.2572 -2.8556 13 6 -0.6453 -5.4868 -3.1258 14 6 -0.4285 -6.1182 -4.3439 15 6 -1.0297 -7.3319 -4.6087 16 6 -1.8590 -7.9175 -3.6607 17 8 -2.4543 -9.1094 -3.9231 18 6 -3.3326 -9.5691 -3.0094 19 1 -3.4744 -9.0362 -2.0808 20 6 -4.0539 -10.7258 -3.2620 21 7 -3.8809 -11.3751 -4.3931 22 14 -5.2713 -11.3623 -1.9963 23 1 -5.2801 -10.4573 -0.8189 24 1 -6.6295 -11.4081 -2.5951 25 1 -4.8726 -12.7275 -1.5688 26 6 -2.0796 -7.2839 -2.4445 27 6 -1.4753 -6.0721 -2.1782 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6966 2.1378 -0.0004 32 1 4.1583 2.0755 -0.0010 33 1 4.1586 -2.0749 0.0077 34 1 0.6264 -2.4510 0.6607 35 1 2.1625 -3.2951 0.3505 36 1 1.2358 -2.2099 -2.0866 37 1 0.1006 -3.6141 -3.5696 38 1 0.2133 -5.6610 -5.0826 39 1 -0.8587 -7.8243 -5.5545 40 1 -4.3853 -12.1847 -4.5697 41 1 -2.7248 -7.7391 -1.7076 42 1 -1.6472 -5.5792 -1.2327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465050525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:49 Heat of formation + Delta-G solvation = 11.386503 kcal Electronic energy + Delta-G solvation = -25765.786076 eV Core-core repulsion = 21904.905106 eV Total energy + Delta-G solvation = -3860.880970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.95461 -40.17682 -38.74287 -36.78471 -35.55991 -34.04057 -33.82292 -32.20541 -31.75846 -30.16016 -28.63281 -27.94038 -26.31607 -25.17385 -23.20394 -22.47262 -21.98076 -21.47168 -20.51281 -18.61757 -17.92223 -17.44117 -17.19597 -16.81405 -16.52328 -15.53469 -15.42937 -15.25171 -14.53951 -14.44880 -14.41979 -14.09269 -13.64457 -13.57902 -13.51141 -13.34541 -13.25558 -13.09029 -12.85594 -12.73336 -12.49932 -11.78131 -11.71147 -11.54426 -11.48730 -11.02139 -10.72412 -10.39909 -10.13199 -9.89343 -9.87445 -9.67635 -9.51818 -9.24379 -9.15590 -8.66498 -8.16788 -6.89291 -6.41653 -3.99100 0.55043 0.77339 2.17346 2.27943 2.70049 3.14084 3.17198 3.22836 3.30713 3.37679 3.96405 4.00288 4.19405 4.24378 4.26880 4.38747 4.51915 4.61435 4.95104 5.01336 5.11438 5.12683 5.15664 5.29142 5.30382 5.41408 5.57183 5.62749 5.70419 5.77367 5.88475 6.15715 6.18155 6.21989 6.24913 6.36245 6.67499 6.76856 6.98776 7.13394 7.20734 7.36769 7.47919 7.52505 7.82187 8.01478 8.04440 8.64919 9.04455 9.74414 10.76468 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.001981 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.197570 B =14132.194153 C =14572.717075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 C -0.178 4.178 4 C 0.106 3.894 5 N -0.491 5.491 6 C 0.124 3.876 7 C -0.162 4.162 8 C 0.186 3.814 9 N -0.746 5.746 10 C 0.700 3.300 11 O -0.573 6.573 12 N -0.674 5.674 13 C 0.052 3.948 14 C -0.095 4.095 15 C -0.178 4.178 16 C 0.145 3.855 17 O -0.178 6.178 18 C -0.389 4.389 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.220 4.220 27 C -0.064 4.064 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.397 0.603 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.269 0.731 41 H 0.130 0.870 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 25.456 6.541 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.050 4.050 5 N -0.199 5.199 6 C -0.034 4.034 7 C -0.165 4.165 8 C 0.062 3.938 9 N -0.403 5.403 10 C 0.400 3.600 11 O -0.449 6.449 12 N -0.321 5.321 13 C -0.041 4.041 14 C -0.115 4.115 15 C -0.198 4.198 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.465 4.465 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.240 4.240 27 C -0.084 4.084 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.228 0.772 37 H 0.231 0.769 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.202 24.370 7.116 27.749 hybrid contribution -1.251 0.428 -0.019 1.322 sum 9.951 24.798 7.097 27.646 Atomic orbital electron populations 1.20953 0.89913 1.03936 1.03442 1.20316 0.96968 0.92344 0.93312 1.22083 0.95635 0.98696 1.03401 1.22838 0.91818 0.96379 0.93972 1.67758 1.41104 0.98447 1.12636 1.22808 0.90889 0.96504 0.93196 1.20838 0.95307 0.95261 1.05049 1.19860 0.98446 0.92000 0.83518 1.45130 1.61850 1.22844 1.10444 1.15932 0.78822 0.81607 0.83613 1.90948 1.61225 1.49305 1.43470 1.42278 1.62618 1.18388 1.08813 1.17028 1.01816 0.88186 0.97049 1.20324 1.00364 0.94831 0.96016 1.19969 1.03405 0.96531 0.99871 1.19409 0.92434 0.86441 0.92585 1.83975 1.50589 1.28185 1.45424 1.21382 1.17659 1.09120 0.98375 0.88977 1.25280 0.97942 0.95791 0.97586 1.70058 1.39905 1.17032 1.22893 0.85651 0.79357 0.78979 0.79484 1.19056 1.20197 1.20177 1.21114 1.06614 0.97626 0.98611 1.20873 0.93675 0.95323 0.98526 0.90072 0.90800 0.90235 0.84622 0.82648 0.82432 0.90320 0.90310 0.77196 0.76890 0.86834 0.86087 0.92138 0.85235 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 9.36 36.01 0.34 -0.35 16 2 C -0.02 -0.14 5.92 -104.32 -0.62 -0.76 16 3 C -0.18 -1.05 9.82 -39.44 -0.39 -1.43 16 4 C 0.11 0.72 11.18 -17.55 -0.20 0.53 16 5 N -0.49 -4.40 10.36 -13.25 -0.14 -4.54 16 6 C 0.12 1.00 10.83 -17.55 -0.19 0.81 16 7 C -0.16 -1.21 5.27 -104.48 -0.55 -1.76 16 8 C 0.19 1.62 4.97 -5.19 -0.03 1.59 16 9 N -0.75 -6.94 4.99 -66.42 -0.33 -7.28 16 10 C 0.70 9.73 8.41 -86.92 -0.73 9.00 16 11 O -0.57 -10.53 13.78 5.29 0.07 -10.45 16 12 N -0.67 -9.00 5.35 -14.18 -0.08 -9.08 16 13 C 0.05 0.92 6.30 -83.62 -0.53 0.39 16 14 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 15 C -0.18 -3.71 9.98 -39.42 -0.39 -4.10 16 16 C 0.15 3.55 6.65 -39.09 -0.26 3.29 16 17 O -0.18 -5.12 9.76 -0.02 0.00 -5.12 16 18 C -0.39 -11.00 9.48 30.88 0.29 -10.71 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 22 Si 0.94 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.22 -5.00 9.16 -39.42 -0.36 -5.36 16 27 C -0.06 -1.29 8.69 -39.42 -0.34 -1.64 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.08 0.52 6.54 -51.93 -0.34 0.18 16 31 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 32 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.16 1.07 8.04 -52.48 -0.42 0.65 16 34 H 0.08 0.73 7.38 -51.93 -0.38 0.34 16 35 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 36 H 0.39 2.72 8.48 -40.82 -0.35 2.37 16 37 H 0.40 3.77 8.84 -40.82 -0.36 3.41 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.98 5.63 -52.49 -0.30 2.68 16 42 H 0.13 2.55 6.22 -52.49 -0.33 2.22 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -34.87 361.38 -8.56 -43.43 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.83 Total: 8.08 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -4.44 Total: -11.59 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.21 Total: -45.61 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.07 Total: -15.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.87 -8.56 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465050525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.821 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds