Wall clock time and date at job start Tue Mar 31 2020 14:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38667 * 120.78764 * 2 1 4 4 C 1.38186 * 119.16511 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.75789 * 0.02562 * 4 3 2 6 6 C 1.31849 * 121.73185 * 359.68640 * 5 4 3 7 7 C 1.38226 * 120.76216 * 0.57675 * 6 5 4 8 8 C 1.50699 * 120.42309 * 179.72983 * 7 6 5 9 9 N 1.46501 * 109.47325 * 259.72659 * 8 7 6 10 10 C 1.34778 * 120.00217 * 179.71900 * 9 8 7 11 11 O 1.21588 * 119.99659 * 0.28187 * 10 9 8 12 12 N 1.34769 * 120.00183 * 180.27122 * 10 9 8 13 13 C 1.40031 * 120.00032 * 175.49505 * 12 10 9 14 14 C 1.38908 * 120.00368 * 214.85238 * 13 12 10 15 15 C 1.38005 * 120.00017 * 179.81229 * 14 13 12 16 16 C 1.38897 * 120.00031 * 0.44857 * 15 14 13 17 17 O 1.35783 * 120.00097 * 179.76575 * 16 15 14 18 18 C 1.34817 * 117.00103 * 185.36045 * 17 16 15 19 19 H 1.07999 * 119.99883 * 354.97120 * 18 17 16 20 20 C 1.38633 * 119.99766 * 174.95958 * 18 17 16 21 21 N 1.31573 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99626 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47492 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47141 * 120.00686 * 22 20 18 25 25 H 1.48503 * 109.47337 * 240.00375 * 22 20 18 26 26 C 1.38906 * 120.00295 * 359.78323 * 16 15 14 27 27 C 1.38006 * 119.99717 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47244 * 269.97840 * 1 2 3 29 29 H 1.08996 * 109.47254 * 29.98220 * 1 2 3 30 30 H 1.09001 * 109.46787 * 149.98190 * 1 2 3 31 31 H 1.08005 * 120.41814 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.62035 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.62366 * 180.28655 * 6 5 4 34 34 H 1.08999 * 109.47498 * 139.72784 * 8 7 6 35 35 H 1.09001 * 109.46803 * 19.72318 * 8 7 6 36 36 H 0.97004 * 120.00058 * 0.02562 * 9 8 7 37 37 H 0.97001 * 119.99988 * 355.50155 * 12 10 9 38 38 H 1.08010 * 119.99938 * 0.02562 * 14 13 12 39 39 H 1.08001 * 119.99923 * 180.19356 * 15 14 13 40 40 H 0.97005 * 120.00001 * 179.97438 * 21 20 18 41 41 H 1.08001 * 119.99788 * 179.97438 * 26 16 15 42 42 H 1.08000 * 119.99891 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5984 -1.1515 0.0040 7 6 2.2167 -1.1909 -0.0007 8 6 1.4909 -2.5116 -0.0004 9 7 1.0446 -2.8239 -1.3604 10 6 0.3737 -3.9672 -1.6036 11 8 0.1344 -4.7370 -0.6933 12 7 -0.0321 -4.2572 -2.8556 13 6 -0.6453 -5.4868 -3.1258 14 6 -0.4285 -6.1182 -4.3439 15 6 -1.0297 -7.3319 -4.6087 16 6 -1.8590 -7.9175 -3.6607 17 8 -2.4543 -9.1094 -3.9231 18 6 -3.3326 -9.5691 -3.0094 19 1 -3.4744 -9.0362 -2.0808 20 6 -4.0539 -10.7258 -3.2620 21 7 -3.8809 -11.3751 -4.3931 22 14 -5.2713 -11.3623 -1.9963 23 1 -5.2801 -10.4573 -0.8189 24 1 -6.6295 -11.4081 -2.5951 25 1 -4.8726 -12.7275 -1.5688 26 6 -2.0796 -7.2839 -2.4445 27 6 -1.4753 -6.0721 -2.1782 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6966 2.1378 -0.0004 32 1 4.1583 2.0755 -0.0010 33 1 4.1586 -2.0749 0.0077 34 1 0.6264 -2.4510 0.6607 35 1 2.1625 -3.2951 0.3505 36 1 1.2358 -2.2099 -2.0866 37 1 0.1006 -3.6141 -3.5696 38 1 0.2133 -5.6610 -5.0826 39 1 -0.8587 -7.8243 -5.5545 40 1 -4.3853 -12.1847 -4.5697 41 1 -2.7248 -7.7391 -1.7076 42 1 -1.6472 -5.5792 -1.2327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465050525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:48 Heat of formation + Delta-G solvation = -12.881103 kcal Electronic energy + Delta-G solvation = -25766.838398 eV Core-core repulsion = 21904.905106 eV Total energy + Delta-G solvation = -3861.933292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76745 -41.21819 -40.39302 -38.34459 -36.48159 -35.39603 -34.55869 -34.12265 -32.50801 -31.81622 -29.64632 -28.89715 -27.45250 -26.86425 -24.03940 -23.69927 -23.22497 -22.37371 -21.81523 -20.07981 -19.49167 -18.96150 -18.15670 -17.78003 -17.31138 -16.63110 -16.47104 -16.24132 -16.18538 -15.79845 -15.48422 -15.26368 -15.21239 -14.93486 -14.61452 -14.31903 -14.13895 -14.00917 -13.77550 -13.59328 -13.55093 -13.29620 -13.20433 -13.13511 -12.70890 -12.41609 -12.28262 -12.10515 -11.49804 -11.32622 -10.94801 -10.55142 -10.46788 -10.41744 -10.15015 -10.05637 -9.80438 -8.55778 -8.45486 -6.11922 0.00420 0.26258 0.55541 0.62506 1.35728 1.42884 1.53672 1.66653 2.10353 2.18967 2.79471 2.85079 3.17505 3.30009 3.43795 3.54700 3.67916 3.77904 3.86964 3.97821 4.12462 4.16047 4.47990 4.50395 4.51562 4.63385 4.68331 4.69801 4.71787 4.77715 4.86712 5.03826 5.08772 5.16314 5.19091 5.32090 5.37854 5.39316 5.45428 5.64236 5.73520 5.74708 5.98263 6.04853 6.22138 6.99174 6.99420 7.03154 7.53150 7.79631 8.77442 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.001981 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.197570 B =14132.194153 C =14572.717075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.023 4.023 3 C -0.173 4.173 4 C 0.099 3.901 5 N -0.519 5.519 6 C 0.113 3.887 7 C -0.164 4.164 8 C 0.190 3.810 9 N -0.721 5.721 10 C 0.699 3.301 11 O -0.618 6.618 12 N -0.661 5.661 13 C 0.082 3.918 14 C -0.079 4.079 15 C -0.180 4.180 16 C 0.104 3.896 17 O -0.229 6.229 18 C -0.411 4.411 19 H 0.097 0.903 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.016 2.984 23 H -0.256 1.256 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.228 4.228 27 C -0.075 4.075 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.422 0.578 38 H 0.166 0.834 39 H 0.128 0.872 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 29.031 6.865 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.032 4.032 3 C -0.193 4.193 4 C -0.057 4.057 5 N -0.228 5.228 6 C -0.044 4.044 7 C -0.166 4.166 8 C 0.066 3.934 9 N -0.377 5.377 10 C 0.400 3.600 11 O -0.498 6.498 12 N -0.311 5.311 13 C -0.012 4.012 14 C -0.099 4.099 15 C -0.199 4.199 16 C 0.054 3.946 17 O -0.135 6.135 18 C -0.488 4.488 19 H 0.115 0.885 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.836 3.164 23 H -0.179 1.179 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.248 4.248 27 C -0.095 4.095 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.181 0.819 32 H 0.196 0.804 33 H 0.179 0.821 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.260 0.740 38 H 0.183 0.817 39 H 0.146 0.854 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.152 28.070 7.423 31.475 hybrid contribution -1.271 -0.267 -0.088 1.302 sum 10.881 27.803 7.335 30.745 Atomic orbital electron populations 1.20959 0.89033 1.04225 1.03762 1.20519 0.97612 0.92304 0.92759 1.22363 0.95332 0.99507 1.02071 1.23304 0.92652 0.96569 0.93142 1.67769 1.42042 0.99240 1.13790 1.22919 0.91247 0.96731 0.93544 1.20639 0.94988 0.94848 1.06150 1.19830 0.98201 0.92638 0.82760 1.44910 1.60019 1.21371 1.11440 1.16069 0.78808 0.82171 0.82962 1.90939 1.62903 1.51088 1.44845 1.42064 1.61928 1.17384 1.09712 1.17124 0.99194 0.88888 0.96016 1.20736 0.99366 0.93083 0.96696 1.20303 1.02520 0.97635 0.99469 1.19937 0.93986 0.86409 0.94286 1.83936 1.52491 1.30626 1.46488 1.21801 1.18278 1.09825 0.98860 0.88548 1.26524 0.99801 0.95682 0.99947 1.70186 1.42003 1.18085 1.25404 0.84560 0.76635 0.78432 0.76776 1.17917 1.19094 1.19303 1.21097 1.07033 0.98654 0.98025 1.20941 0.94419 0.94725 0.99449 0.89741 0.89097 0.91314 0.81947 0.80422 0.82076 0.90754 0.91063 0.75259 0.73967 0.81668 0.85398 0.91843 0.86685 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.36 71.24 0.67 -0.33 16 2 C -0.02 -0.25 5.92 -19.67 -0.12 -0.36 16 3 C -0.17 -1.47 9.82 22.36 0.22 -1.25 16 4 C 0.10 1.10 11.18 84.67 0.95 2.05 16 5 N -0.52 -8.45 10.36 -195.84 -2.03 -10.48 16 6 C 0.11 1.66 10.83 84.69 0.92 2.58 16 7 C -0.16 -2.13 5.27 -19.77 -0.10 -2.23 16 8 C 0.19 3.00 4.97 85.63 0.43 3.42 16 9 N -0.72 -11.52 4.99 -482.30 -2.41 -13.92 16 10 C 0.70 17.73 8.41 179.06 1.51 19.23 16 11 O -0.62 -22.00 13.78 -3.99 -0.06 -22.05 16 12 N -0.66 -15.29 5.35 -317.05 -1.69 -16.98 16 13 C 0.08 2.69 6.30 38.15 0.24 2.94 16 14 C -0.08 -2.49 9.96 22.38 0.22 -2.26 16 15 C -0.18 -7.40 9.98 22.37 0.22 -7.17 16 16 C 0.10 5.29 6.65 22.59 0.15 5.44 16 17 O -0.23 -13.93 9.76 -22.98 -0.22 -14.15 16 18 C -0.41 -24.56 9.48 67.91 0.64 -23.91 16 19 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 21 N -0.92 -56.79 13.67 21.61 0.30 -56.50 16 22 Si 1.02 44.03 29.55 68.60 2.03 46.06 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 C -0.23 -10.74 9.16 22.37 0.20 -10.53 16 27 C -0.07 -3.01 8.69 22.37 0.19 -2.82 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.43 8.10 -2.39 -0.02 0.41 16 30 H 0.07 0.71 6.54 -2.39 -0.02 0.70 16 31 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.16 2.05 8.04 -2.91 -0.02 2.03 16 34 H 0.07 1.28 7.38 -2.39 -0.02 1.26 16 35 H 0.07 1.27 8.02 -2.39 -0.02 1.25 16 36 H 0.41 4.18 8.48 -92.71 -0.79 3.40 16 37 H 0.42 5.91 8.84 -92.71 -0.82 5.09 16 38 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 41 H 0.12 5.61 5.63 -2.91 -0.02 5.60 16 42 H 0.13 5.10 6.22 -2.91 -0.02 5.09 16 Total: -1.00 -81.22 361.38 2.21 -79.01 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -0.51 Total: 25.06 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 6.81 Total: -16.04 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.83 Total: -97.88 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.28 Total: -36.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -81.22 2.21 -79.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465050525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.131 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds