Wall clock time and date at job start Tue Mar 31 2020 15:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 119.99804 * 2 1 4 4 N 1.32127 * 119.99334 * 180.25323 * 3 2 1 5 5 C 1.32154 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99512 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.47700 * 304.98381 * 6 5 4 8 8 N 1.46494 * 109.47328 * 180.02562 * 7 6 5 9 9 S 1.65603 * 120.00215 * 164.99897 * 8 7 6 10 10 O 1.42091 * 104.27934 * 181.06953 * 9 8 7 11 11 O 1.42097 * 104.27731 * 308.93129 * 9 8 7 12 12 C 1.81402 * 104.44698 * 64.99804 * 9 8 7 13 13 C 1.53003 * 109.46823 * 180.02562 * 12 9 8 14 14 C 1.53003 * 109.47059 * 300.00018 * 13 12 9 15 15 C 1.52995 * 109.47052 * 60.00127 * 13 12 9 16 16 C 1.50703 * 109.46948 * 180.02562 * 13 12 9 17 17 H 1.08004 * 120.00078 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00108 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99881 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00031 * 179.97438 * 18 16 13 21 21 H 1.48508 * 109.47032 * 89.99940 * 20 18 16 22 22 H 1.48501 * 109.46827 * 209.99392 * 20 18 16 23 23 H 1.48494 * 109.47307 * 329.99808 * 20 18 16 24 24 C 1.38337 * 120.00458 * 0.02562 * 5 4 3 25 25 N 1.32124 * 119.99937 * 180.28111 * 2 1 3 26 26 H 1.09000 * 109.46964 * 269.72239 * 1 2 3 27 27 H 1.09003 * 109.47060 * 29.72052 * 1 2 3 28 28 H 1.08996 * 109.47300 * 149.72105 * 1 2 3 29 29 H 1.08001 * 120.00386 * 0.25864 * 3 2 1 30 30 H 1.08996 * 109.46796 * 64.98833 * 6 5 4 31 31 H 1.09003 * 109.46732 * 184.98041 * 6 5 4 32 32 H 1.09001 * 109.46968 * 300.00344 * 7 6 5 33 33 H 1.09001 * 109.47032 * 59.99545 * 7 6 5 34 34 H 0.96998 * 120.00292 * 344.99799 * 8 7 6 35 35 H 1.08995 * 109.47661 * 300.00041 * 12 9 8 36 36 H 1.09000 * 109.46991 * 60.00670 * 12 9 8 37 37 H 1.08997 * 109.47003 * 60.00398 * 14 13 12 38 38 H 1.09001 * 109.46507 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.46951 * 299.99912 * 14 13 12 40 40 H 1.08995 * 109.47026 * 60.00292 * 15 13 12 41 41 H 1.09007 * 109.46656 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.47453 * 299.99872 * 15 13 12 43 43 H 0.97002 * 119.99948 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.00175 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1984 -0.0051 5 6 4.1808 0.0539 -0.0106 6 6 5.6879 0.0539 -0.0158 7 6 6.1939 0.8842 -1.1969 8 7 7.6589 0.8837 -1.2022 9 16 8.4822 1.3776 -2.5515 10 8 9.8510 1.2203 -2.2040 11 8 7.9039 0.6258 -3.6097 12 6 8.0656 3.1352 -2.7179 13 6 8.7740 3.7133 -3.9447 14 6 10.2874 3.5614 -3.7785 15 6 8.3203 2.9609 -5.1972 16 6 8.4284 5.1737 -4.0825 17 1 7.7691 5.6425 -3.3669 18 6 8.9530 5.9111 -5.1227 19 7 9.7555 5.3401 -5.9944 20 14 8.5241 7.7211 -5.2940 21 1 9.5130 8.5373 -4.5447 22 1 8.5528 8.1030 -6.7288 23 1 7.1657 7.9621 -4.7446 24 6 3.4892 -1.1442 -0.0117 25 7 2.1676 -1.1442 -0.0056 26 1 -0.3633 -0.0050 1.0277 27 1 -0.3633 0.8925 -0.5095 28 1 -0.3634 -0.8874 -0.5181 29 1 1.6589 2.1338 0.0042 30 1 6.0544 0.4857 0.9155 31 1 6.0509 -0.9697 -0.1092 32 1 5.8274 0.4524 -2.1282 33 1 5.8309 1.9078 -1.1035 34 1 8.1467 0.5941 -0.4154 35 1 6.9876 3.2435 -2.8367 36 1 8.3885 3.6712 -1.8253 37 1 10.5376 2.5052 -3.6786 38 1 10.7919 3.9736 -4.6523 39 1 10.6105 4.0974 -2.8861 40 1 7.2423 3.0692 -5.3156 41 1 8.8247 3.3731 -6.0712 42 1 8.5706 1.9048 -5.0973 43 1 10.1249 5.8590 -6.7260 44 1 4.0291 -2.0795 -0.0167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475368116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:32 Heat of formation + Delta-G solvation = -61.976544 kcal Electronic energy + Delta-G solvation = -25809.732632 eV Core-core repulsion = 22081.114353 eV Total energy + Delta-G solvation = -3728.618279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12407 -38.15344 -38.11651 -37.38006 -36.87096 -35.39929 -34.05226 -33.63101 -31.39966 -28.33042 -27.75153 -27.68648 -27.24239 -25.71404 -24.40051 -22.57347 -21.37172 -20.28513 -18.85684 -18.72369 -17.87709 -17.40347 -17.10744 -16.94068 -16.67187 -16.51177 -16.24464 -15.72054 -15.54204 -14.96781 -14.66347 -14.42660 -14.35153 -13.83580 -13.82266 -13.69150 -13.34049 -13.15353 -13.06841 -12.96950 -12.89250 -12.77903 -12.67663 -12.63478 -12.51169 -12.48587 -12.17470 -12.13948 -12.02897 -11.94626 -11.56400 -11.36424 -10.69796 -10.41665 -10.34795 -9.99080 -9.95452 -8.03119 -6.21722 -0.60634 -0.20321 0.15365 1.43757 1.45476 1.54277 1.89243 2.44163 2.66872 2.85504 3.08922 3.19035 3.26233 3.32420 3.50173 3.77977 3.87855 4.03603 4.09436 4.16232 4.21829 4.32391 4.54916 4.58503 4.61326 4.65935 4.77790 4.86664 4.86845 4.87780 4.97605 5.00933 5.08028 5.11122 5.15549 5.39101 5.48498 5.51379 5.64706 5.98109 6.11721 6.16755 6.33700 6.34649 6.82663 6.83093 7.46559 8.96726 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.003031 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.807837 B = 9235.742490 C =10595.411673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.065 3.935 3 C 0.048 3.952 4 N -0.455 5.455 5 C 0.063 3.937 6 C -0.064 4.064 7 C 0.117 3.883 8 N -1.110 6.110 9 S 2.617 3.383 10 O -0.990 6.990 11 O -0.992 6.992 12 C -0.588 4.588 13 C 0.069 3.931 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.518 4.518 17 H 0.062 0.938 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.267 1.267 24 C 0.056 3.944 25 N -0.463 5.463 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.194 0.806 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.427 0.573 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.261 0.739 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 -10.473 15.415 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 C -0.113 4.113 4 N -0.170 5.170 5 C -0.077 4.077 6 C -0.104 4.104 7 C -0.010 4.010 8 N -0.872 5.872 9 S 2.714 3.286 10 O -0.980 6.980 11 O -0.982 6.982 12 C -0.720 4.720 13 C 0.067 3.933 14 C -0.218 4.218 15 C -0.218 4.218 16 C -0.557 4.557 17 H 0.080 0.920 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.104 4.104 25 N -0.179 5.179 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.211 0.789 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.264 0.736 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.089 -10.968 14.564 23.666 hybrid contribution -0.031 1.472 0.057 1.474 sum -15.120 -9.495 14.621 23.077 Atomic orbital electron populations 1.20784 0.85513 1.04852 1.04453 1.22869 1.00074 0.89401 0.95193 1.24103 0.90207 1.00506 0.96442 1.68256 1.09788 1.30068 1.08844 1.22275 0.98147 0.89931 0.97364 1.20682 0.87057 1.03342 0.99324 1.21307 0.78106 1.01697 0.99872 1.55292 1.15273 1.83123 1.33530 1.04595 0.73064 0.77858 0.73086 1.93511 1.34316 1.86900 1.83249 1.93501 1.79129 1.69438 1.56088 1.30465 1.11118 1.21857 1.08601 1.17913 0.91413 0.95778 0.88163 1.22212 0.98722 0.98657 1.02245 1.22205 1.00133 0.97038 1.02400 1.21315 1.29008 0.94034 1.11379 0.91967 1.25682 0.94915 1.02163 0.95450 1.69946 1.32503 1.37064 1.15164 0.85614 0.78763 0.80563 0.77028 1.20340 1.21244 1.19184 1.24037 0.90480 1.00086 0.95777 1.68367 1.09310 1.30275 1.09915 0.88737 0.88124 0.90529 0.78903 0.87224 0.86621 0.91540 0.90561 0.73649 0.84970 0.84401 0.94758 0.91069 0.94053 0.94306 0.91064 0.94732 0.92926 0.78933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.19 71.24 0.73 -0.14 16 2 C 0.06 1.04 6.79 42.55 0.29 1.33 16 3 C 0.05 0.79 10.88 84.68 0.92 1.71 16 4 N -0.45 -9.29 10.06 -183.29 -1.84 -11.14 16 5 C 0.06 1.14 6.18 42.54 0.26 1.41 16 6 C -0.06 -0.95 5.77 29.85 0.17 -0.78 16 7 C 0.12 2.51 6.00 86.38 0.52 3.02 16 8 N -1.11 -26.38 5.88 -187.51 -1.10 -27.48 16 9 S 2.62 92.56 4.49 -56.49 -0.25 92.30 16 10 O -0.99 -39.91 15.70 -127.65 -2.00 -41.92 16 11 O -0.99 -40.73 15.11 -127.65 -1.93 -42.66 16 12 C -0.59 -22.25 5.01 71.98 0.36 -21.88 16 13 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 14 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 15 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 16 C -0.52 -27.18 8.01 25.60 0.21 -26.98 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C 0.02 0.92 5.15 84.65 0.44 1.35 16 19 N -0.91 -50.59 9.35 21.45 0.20 -50.39 16 20 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 C 0.06 0.94 10.85 84.67 0.92 1.86 16 25 N -0.46 -8.88 10.42 -183.30 -1.91 -10.79 16 26 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.48 8.08 -2.39 -0.02 0.46 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 1.17 7.89 -2.39 -0.02 1.16 16 32 H 0.07 1.61 7.69 -2.39 -0.02 1.59 16 33 H 0.08 1.65 7.96 -2.39 -0.02 1.63 16 34 H 0.43 7.71 8.62 -96.75 -0.83 6.87 16 35 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 36 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 37 H 0.03 1.62 5.46 -2.39 -0.01 1.61 16 38 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 3.89 6.07 -2.38 -0.01 3.88 16 42 H 0.03 1.64 5.46 -2.39 -0.01 1.63 16 43 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.19 2.05 7.95 -2.91 -0.02 2.02 16 Total: -1.00 -73.31 365.14 -0.74 -74.05 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.18 Total: 24.32 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 5.90 Total: -50.67 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.66 Total: -99.79 kcal Atomic # 8 Polarization: -80.64 SS G_CDS: -3.93 Total: -84.57 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 92.56 SS G_CDS: -0.25 Total: 92.30 kcal Total: -73.31 -0.74 -74.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475368116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.069 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds