Wall clock time and date at job start Tue Mar 31 2020 15:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 122.90799 * 2 1 4 4 C 1.29425 * 117.36821 * 179.97438 * 3 2 1 5 5 C 1.50699 * 124.80541 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 60.02389 * 5 4 3 7 7 C 1.52992 * 109.46956 * 300.02076 * 5 4 3 8 8 S 1.70957 * 110.38708 * 0.25994 * 4 3 2 9 9 C 1.35663 * 122.90274 * 179.97438 * 2 1 3 10 10 C 1.46683 * 126.13146 * 0.04236 * 9 2 1 11 11 O 1.21688 * 119.99624 * 359.97438 * 10 9 2 12 12 N 1.34778 * 120.00137 * 179.97438 * 10 9 2 13 13 C 1.46493 * 120.00024 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47024 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47278 * 304.99275 * 14 13 12 16 16 O 1.42896 * 109.47231 * 64.99806 * 14 13 12 17 17 C 1.53007 * 109.47049 * 184.99637 * 14 13 12 18 18 N 1.46499 * 109.47099 * 179.97438 * 17 14 13 19 19 C 1.36936 * 119.99730 * 179.97438 * 18 17 14 20 20 H 1.07995 * 120.00161 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99840 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00143 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99846 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47065 * 90.00048 * 23 21 19 25 25 H 1.48503 * 109.46986 * 209.99861 * 23 21 19 26 26 H 1.48500 * 109.47040 * 329.99797 * 23 21 19 27 27 H 1.09000 * 109.46881 * 90.02474 * 1 2 3 28 28 H 1.09000 * 109.47483 * 210.02664 * 1 2 3 29 29 H 1.09005 * 109.46997 * 330.03115 * 1 2 3 30 30 H 1.09002 * 109.46959 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 34 34 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 35 35 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 36 36 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 37 37 H 0.97000 * 119.99791 * 359.97438 * 12 10 9 38 38 H 1.09006 * 109.47190 * 299.99675 * 13 12 10 39 39 H 1.09003 * 109.47705 * 59.99750 * 13 12 10 40 40 H 0.96700 * 114.00133 * 60.00058 * 16 14 13 41 41 H 1.08999 * 109.46785 * 299.99939 * 17 14 13 42 42 H 1.09000 * 109.47150 * 59.99808 * 17 14 13 43 43 H 0.97000 * 119.99762 * 0.02562 * 18 17 14 44 44 H 0.97003 * 120.00286 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9744 0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2626 2.9791 1.2489 7 6 4.2627 2.9780 -1.2495 8 16 3.9446 -0.6781 -0.0062 9 6 2.2439 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0002 11 8 0.5173 -2.6997 0.0000 12 7 2.5678 -3.5557 0.0003 13 6 2.0436 -4.9236 -0.0005 14 6 3.2082 -5.9160 -0.0009 15 1 3.8671 -5.7027 -0.8426 16 8 3.9399 -5.7923 1.2202 17 6 2.6643 -7.3405 -0.1274 18 7 3.7793 -8.2907 -0.1284 19 6 3.5341 -9.6339 -0.2321 20 1 2.5188 -9.9928 -0.3135 21 6 4.5906 -10.5342 -0.2336 22 7 4.3550 -11.8252 -0.3337 23 14 6.3469 -9.9134 -0.0934 24 1 6.7342 -9.8428 1.3384 25 1 7.2589 -10.8427 -0.8077 26 1 6.4438 -8.5613 -0.6997 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 5.5007 1.7345 0.0002 31 1 3.2442 3.3675 1.2487 32 1 4.9686 3.8096 1.2488 33 1 4.4190 2.3699 2.1392 34 1 4.4191 2.3681 -2.1393 35 1 3.2442 3.3664 -1.2497 36 1 4.9687 3.8085 -1.2501 37 1 3.5258 -3.4033 0.0001 38 1 1.4333 -5.0794 0.8891 39 1 1.4342 -5.0788 -0.8909 40 1 3.4149 -5.9687 2.0129 41 1 2.0053 -7.5539 0.7142 42 1 2.1061 -7.4349 -1.0589 43 1 4.6912 -7.9684 -0.0549 44 1 5.0934 -12.4544 -0.3351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497112775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:14 Heat of formation + Delta-G solvation = -44.145423 kcal Electronic energy + Delta-G solvation = -24827.320505 eV Core-core repulsion = 21099.475441 eV Total energy + Delta-G solvation = -3727.845063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75223 -39.56638 -37.81739 -36.03562 -34.63752 -34.18979 -31.63467 -31.45006 -29.99684 -28.33885 -27.67369 -25.75871 -25.49383 -22.70254 -21.80112 -21.56252 -21.20969 -19.61028 -18.25438 -17.76613 -17.23532 -16.32743 -16.25284 -15.89460 -15.62241 -15.28953 -14.67043 -14.59418 -14.49188 -14.04956 -13.83650 -13.80489 -13.64381 -13.29338 -12.85404 -12.77160 -12.74476 -12.48507 -12.42599 -12.14151 -12.05992 -11.69769 -11.68691 -11.53375 -11.33034 -10.89816 -10.86847 -10.36034 -10.20614 -10.04629 -9.86872 -9.79484 -9.58901 -9.35508 -9.05226 -8.95658 -7.28953 -5.80156 -3.16659 -0.11125 0.79161 1.20176 2.10670 2.84323 2.90705 3.37563 3.42239 3.44858 3.50680 4.23111 4.42864 4.45367 4.51685 4.52479 4.57512 4.64142 4.80755 4.88850 5.06706 5.15934 5.24533 5.33115 5.37871 5.39068 5.44145 5.48175 5.50512 5.56641 5.62772 5.72077 5.74179 5.78182 5.78695 6.02491 6.18919 6.37615 6.50165 7.14329 7.30257 7.71876 7.89299 7.95488 8.38218 9.17607 9.89471 10.09052 11.37787 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.002321 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.634008 B =12060.315489 C =13093.936006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.152 3.848 3 N -0.473 5.473 4 C 0.072 3.928 5 C -0.020 4.020 6 C -0.140 4.140 7 C -0.141 4.141 8 S 0.160 5.840 9 C -0.302 4.302 10 C 0.596 3.404 11 O -0.524 6.524 12 N -0.716 5.716 13 C 0.091 3.909 14 C 0.084 3.916 15 H 0.104 0.896 16 O -0.556 6.556 17 C 0.132 3.868 18 N -0.749 5.749 19 C -0.249 4.249 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.888 3.112 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.377 0.623 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.366 0.634 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 32.617 1.262 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.014 3.986 3 N -0.188 5.188 4 C -0.204 4.204 5 C -0.042 4.042 6 C -0.199 4.199 7 C -0.199 4.199 8 S 0.419 5.581 9 C -0.426 4.426 10 C 0.382 3.618 11 O -0.403 6.403 12 N -0.368 5.368 13 C -0.033 4.033 14 C 0.024 3.976 15 H 0.122 0.878 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.200 0.800 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.492 32.316 0.819 32.330 hybrid contribution 0.452 0.119 0.387 0.606 sum -0.041 32.435 1.205 32.457 Atomic orbital electron populations 1.20674 0.85884 1.04528 1.03776 1.20690 0.98664 0.84846 0.94385 1.65997 1.04239 1.31156 1.17363 1.27458 0.94455 0.98174 1.00280 1.19950 0.95016 0.91052 0.98214 1.21816 1.03249 0.99287 0.95574 1.21816 1.03258 0.99303 0.95562 1.83999 1.05482 1.02428 1.66197 1.25436 0.96084 0.99078 1.22006 1.16656 0.86125 0.82393 0.76652 1.90796 1.14169 1.84962 1.50331 1.45820 1.09860 1.06010 1.75085 1.22159 0.97322 0.80003 1.03808 1.22462 0.92560 0.94314 0.88240 0.87777 1.86543 1.41215 1.92825 1.15603 1.21160 0.91725 0.86994 0.99806 1.42556 1.03214 1.03369 1.90422 1.19036 0.95145 0.80550 1.43110 0.89238 1.24681 0.97568 0.95078 1.01733 1.69704 1.30919 1.00412 1.56965 0.86491 0.85984 0.77774 0.77905 1.20999 1.21791 1.20290 0.90047 0.88092 0.90755 0.88952 0.91284 0.91328 0.92374 0.92392 0.91279 0.91322 0.76353 0.90432 0.89823 0.77527 0.94930 0.94420 0.80015 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.69 36.00 0.35 -0.56 16 2 C 0.15 1.72 6.79 -83.89 -0.57 1.15 16 3 N -0.47 -5.00 10.48 -7.70 -0.08 -5.08 16 4 C 0.07 0.63 5.90 -13.29 -0.08 0.55 16 5 C -0.02 -0.12 3.35 -91.78 -0.31 -0.43 16 6 C -0.14 -0.75 9.17 37.16 0.34 -0.41 16 7 C -0.14 -0.75 9.17 37.15 0.34 -0.41 16 8 S 0.16 1.39 22.29 -107.50 -2.40 -1.01 16 9 C -0.30 -3.44 6.48 -37.09 -0.24 -3.68 16 10 C 0.60 7.66 7.78 -12.85 -0.10 7.56 16 11 O -0.52 -7.95 14.27 5.20 0.07 -7.88 16 12 N -0.72 -8.26 5.50 -61.62 -0.34 -8.60 16 13 C 0.09 1.10 5.31 -4.04 -0.02 1.08 16 14 C 0.08 1.17 3.09 -26.73 -0.08 1.08 16 15 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 16 O -0.56 -7.87 13.03 -35.23 -0.46 -8.33 16 17 C 0.13 2.36 5.92 -4.04 -0.02 2.34 16 18 N -0.75 -17.51 5.30 -59.91 -0.32 -17.82 16 19 C -0.25 -7.02 10.47 -15.06 -0.16 -7.17 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 23 Si 0.89 22.27 27.74 -169.99 -4.71 17.55 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.15 6.01 -51.93 -0.31 0.84 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.40 4.18 7.66 -40.82 -0.31 3.86 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.38 4.37 9.05 45.56 0.41 4.78 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.37 8.54 5.41 -40.82 -0.22 8.32 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -34.20 380.39 -8.31 -42.51 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.94 Total: 10.26 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.65 Total: 1.17 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.04 Total: -60.00 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.38 Total: -16.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.20 -8.31 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497112775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.631 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds