Wall clock time and date at job start Tue Mar 31 2020 15:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 122.90799 * 2 1 4 4 C 1.29425 * 117.36821 * 179.97438 * 3 2 1 5 5 C 1.50699 * 124.80541 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 60.02389 * 5 4 3 7 7 C 1.52992 * 109.46956 * 300.02076 * 5 4 3 8 8 S 1.70957 * 110.38708 * 0.25994 * 4 3 2 9 9 C 1.35663 * 122.90274 * 179.97438 * 2 1 3 10 10 C 1.46683 * 126.13146 * 0.04236 * 9 2 1 11 11 O 1.21688 * 119.99624 * 359.97438 * 10 9 2 12 12 N 1.34778 * 120.00137 * 179.97438 * 10 9 2 13 13 C 1.46493 * 120.00024 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47024 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.47278 * 304.99275 * 14 13 12 16 16 O 1.42896 * 109.47231 * 64.99806 * 14 13 12 17 17 C 1.53007 * 109.47049 * 184.99637 * 14 13 12 18 18 N 1.46499 * 109.47099 * 179.97438 * 17 14 13 19 19 C 1.36936 * 119.99730 * 179.97438 * 18 17 14 20 20 H 1.07995 * 120.00161 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99840 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00143 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99846 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47065 * 90.00048 * 23 21 19 25 25 H 1.48503 * 109.46986 * 209.99861 * 23 21 19 26 26 H 1.48500 * 109.47040 * 329.99797 * 23 21 19 27 27 H 1.09000 * 109.46881 * 90.02474 * 1 2 3 28 28 H 1.09000 * 109.47483 * 210.02664 * 1 2 3 29 29 H 1.09005 * 109.46997 * 330.03115 * 1 2 3 30 30 H 1.09002 * 109.46959 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 34 34 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 35 35 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 36 36 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 37 37 H 0.97000 * 119.99791 * 359.97438 * 12 10 9 38 38 H 1.09006 * 109.47190 * 299.99675 * 13 12 10 39 39 H 1.09003 * 109.47705 * 59.99750 * 13 12 10 40 40 H 0.96700 * 114.00133 * 60.00058 * 16 14 13 41 41 H 1.08999 * 109.46785 * 299.99939 * 17 14 13 42 42 H 1.09000 * 109.47150 * 59.99808 * 17 14 13 43 43 H 0.97000 * 119.99762 * 0.02562 * 18 17 14 44 44 H 0.97003 * 120.00286 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9744 0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2626 2.9791 1.2489 7 6 4.2627 2.9780 -1.2495 8 16 3.9446 -0.6781 -0.0062 9 6 2.2439 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0002 11 8 0.5173 -2.6997 0.0000 12 7 2.5678 -3.5557 0.0003 13 6 2.0436 -4.9236 -0.0005 14 6 3.2082 -5.9160 -0.0009 15 1 3.8671 -5.7027 -0.8426 16 8 3.9399 -5.7923 1.2202 17 6 2.6643 -7.3405 -0.1274 18 7 3.7793 -8.2907 -0.1284 19 6 3.5341 -9.6339 -0.2321 20 1 2.5188 -9.9928 -0.3135 21 6 4.5906 -10.5342 -0.2336 22 7 4.3550 -11.8252 -0.3337 23 14 6.3469 -9.9134 -0.0934 24 1 6.7342 -9.8428 1.3384 25 1 7.2589 -10.8427 -0.8077 26 1 6.4438 -8.5613 -0.6997 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 5.5007 1.7345 0.0002 31 1 3.2442 3.3675 1.2487 32 1 4.9686 3.8096 1.2488 33 1 4.4190 2.3699 2.1392 34 1 4.4191 2.3681 -2.1393 35 1 3.2442 3.3664 -1.2497 36 1 4.9687 3.8085 -1.2501 37 1 3.5258 -3.4033 0.0001 38 1 1.4333 -5.0794 0.8891 39 1 1.4342 -5.0788 -0.8909 40 1 3.4149 -5.9687 2.0129 41 1 2.0053 -7.5539 0.7142 42 1 2.1061 -7.4349 -1.0589 43 1 4.6912 -7.9684 -0.0549 44 1 5.0934 -12.4544 -0.3351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497112775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:13 Heat of formation + Delta-G solvation = -71.268879 kcal Electronic energy + Delta-G solvation = -24828.496666 eV Core-core repulsion = 21099.475441 eV Total energy + Delta-G solvation = -3729.021225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57414 -40.49068 -39.00578 -36.57693 -36.21614 -35.45027 -33.49851 -32.30692 -31.24985 -29.40240 -28.07030 -27.06539 -26.28535 -24.28789 -22.92193 -22.73622 -21.96547 -20.50557 -19.76139 -19.01202 -18.14083 -17.43265 -17.31749 -16.70621 -16.56868 -16.48146 -16.06596 -15.57352 -15.43513 -15.25692 -15.01256 -14.83216 -14.56777 -14.32328 -14.20836 -13.97553 -13.62591 -13.37044 -13.35784 -13.22253 -12.94535 -12.81864 -12.64214 -12.42873 -12.25422 -12.13721 -11.98857 -11.91066 -11.84527 -11.33517 -11.04923 -11.00365 -10.73493 -10.65488 -10.28161 -9.80541 -9.32619 -8.04089 -5.38044 -0.87846 0.07696 0.45877 1.29567 1.39402 1.42523 1.49877 1.88570 1.99329 2.48122 2.86651 3.26156 3.30540 3.48137 3.65135 3.67280 3.93884 3.96090 4.01378 4.07205 4.09712 4.18567 4.39505 4.56676 4.64393 4.66574 4.68557 4.79925 4.80536 4.90982 4.91287 4.92638 5.07096 5.09990 5.16818 5.28486 5.32371 5.39744 5.73151 6.19233 6.23904 6.54064 6.72515 6.94758 7.06864 7.81996 8.01343 9.17079 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.002321 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.634008 B =12060.315489 C =13093.936006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.145 3.855 3 N -0.492 5.492 4 C 0.075 3.925 5 C -0.023 4.023 6 C -0.138 4.138 7 C -0.138 4.138 8 S 0.200 5.800 9 C -0.331 4.331 10 C 0.596 3.404 11 O -0.554 6.554 12 N -0.708 5.708 13 C 0.101 3.899 14 C 0.105 3.895 15 H 0.109 0.891 16 O -0.563 6.563 17 C 0.125 3.875 18 N -0.752 5.752 19 C -0.238 4.238 20 H 0.057 0.943 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.252 1.252 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.409 0.591 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.389 0.611 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.369 0.631 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 35.384 1.451 35.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 N -0.207 5.207 4 C -0.200 4.200 5 C -0.045 4.045 6 C -0.197 4.197 7 C -0.197 4.197 8 S 0.460 5.540 9 C -0.455 4.455 10 C 0.382 3.618 11 O -0.435 6.435 12 N -0.360 5.360 13 C -0.023 4.023 14 C 0.045 3.955 15 H 0.127 0.873 16 O -0.370 6.370 17 C -0.003 4.003 18 N -0.399 5.399 19 C -0.368 4.368 20 H 0.075 0.925 21 C -0.256 4.256 22 N -0.633 5.633 23 Si 0.787 3.213 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.177 1.177 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.245 0.755 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.203 0.797 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.612 35.135 1.017 35.187 hybrid contribution -0.279 -0.675 0.340 0.806 sum 1.333 34.460 1.356 34.512 Atomic orbital electron populations 1.20622 0.85767 1.04288 1.03865 1.20893 0.99192 0.85238 0.94099 1.66052 1.05089 1.30911 1.18610 1.28091 0.94459 0.99222 0.98261 1.20202 0.95256 0.90349 0.98724 1.21808 1.03011 0.99774 0.95077 1.21807 1.03012 0.99792 0.95070 1.83771 1.03020 1.01834 1.65396 1.25367 0.98050 0.98300 1.23767 1.16840 0.85796 0.83075 0.76042 1.90779 1.15415 1.85531 1.51796 1.45692 1.10137 1.05480 1.74679 1.21967 0.96447 0.79922 1.04013 1.22159 0.92900 0.91901 0.88582 0.87277 1.86521 1.41776 1.92679 1.16074 1.21378 0.90503 0.88484 0.99891 1.42531 1.04790 1.02260 1.90280 1.19034 0.93715 0.82900 1.41195 0.92487 1.25540 1.02405 0.95203 1.02486 1.69885 1.32201 1.01996 1.59233 0.85335 0.79860 0.78091 0.77985 1.20521 1.22298 1.17681 0.89777 0.89537 0.89661 0.86751 0.92725 0.89194 0.92641 0.92653 0.92732 0.89189 0.75501 0.90137 0.89896 0.76175 0.94490 0.94280 0.79685 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.69 71.23 0.69 -1.07 16 2 C 0.14 3.20 6.79 42.09 0.29 3.49 16 3 N -0.49 -9.90 10.48 -178.29 -1.87 -11.77 16 4 C 0.07 1.16 5.90 88.46 0.52 1.69 16 5 C -0.02 -0.22 3.35 -11.54 -0.04 -0.25 16 6 C -0.14 -1.16 9.17 71.98 0.66 -0.50 16 7 C -0.14 -1.16 9.17 71.98 0.66 -0.50 16 8 S 0.20 3.05 22.29 -56.49 -1.26 1.79 16 9 C -0.33 -7.22 6.48 23.88 0.15 -7.07 16 10 C 0.60 14.83 7.78 86.45 0.67 15.51 16 11 O -0.55 -16.81 14.27 -4.31 -0.06 -16.87 16 12 N -0.71 -15.16 5.50 -467.08 -2.57 -17.72 16 13 C 0.10 2.26 5.31 86.38 0.46 2.72 16 14 C 0.10 2.66 3.09 30.60 0.09 2.76 16 15 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 16 O -0.56 -14.37 13.03 -148.98 -1.94 -16.31 16 17 C 0.12 4.29 5.92 86.38 0.51 4.81 16 18 N -0.75 -34.12 5.30 -343.45 -1.82 -35.94 16 19 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 20 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16 22 N -0.98 -63.00 13.97 21.65 0.30 -62.69 16 23 Si 0.96 45.56 27.74 68.60 1.90 47.47 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.09 2.02 6.01 -2.39 -0.01 2.01 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.11 0.59 8.12 -2.39 -0.02 0.57 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.41 7.55 7.66 -92.71 -0.71 6.84 16 38 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.39 8.00 9.05 -74.06 -0.67 7.33 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.37 16.26 5.41 -92.71 -0.50 15.76 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -74.19 380.39 -2.19 -76.38 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.90 Total: 30.02 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.02 Total: 5.64 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.95 Total: -128.12 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.00 Total: -33.18 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.26 Total: 1.79 kcal Total: -74.19 -2.19 -76.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497112775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.113 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds