Wall clock time and date at job start Tue Mar 31 2020 15:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30940 * 122.90462 * 2 1 4 4 C 1.29432 * 117.36423 * 179.97438 * 3 2 1 5 5 C 1.50706 * 124.80579 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47238 * 60.02062 * 5 4 3 7 7 C 1.52999 * 109.46573 * 300.02088 * 5 4 3 8 8 S 1.70948 * 110.39220 * 0.26684 * 4 3 2 9 9 C 1.35661 * 122.90617 * 179.97438 * 2 1 3 10 10 C 1.46691 * 126.12780 * 0.02796 * 9 2 1 11 11 O 1.21686 * 119.99806 * 0.02562 * 10 9 2 12 12 N 1.34772 * 119.99875 * 180.02562 * 10 9 2 13 13 C 1.46499 * 119.99727 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47120 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.46909 * 59.99897 * 14 13 12 16 16 O 1.42903 * 109.46867 * 300.00338 * 14 13 12 17 17 C 1.52997 * 109.47589 * 179.97438 * 14 13 12 18 18 N 1.46497 * 109.47492 * 185.00004 * 17 14 13 19 19 C 1.36935 * 119.99715 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00367 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99589 * 180.02562 * 19 18 17 22 22 N 1.31613 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99832 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46975 * 89.99814 * 23 21 19 25 25 H 1.48498 * 109.46742 * 209.99622 * 23 21 19 26 26 H 1.48503 * 109.46879 * 329.99574 * 23 21 19 27 27 H 1.09000 * 109.47540 * 90.01407 * 1 2 3 28 28 H 1.09000 * 109.47306 * 210.02365 * 1 2 3 29 29 H 1.09005 * 109.46878 * 330.01937 * 1 2 3 30 30 H 1.08996 * 109.46822 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46832 * 60.00314 * 6 5 4 33 33 H 1.09004 * 109.47261 * 300.00295 * 6 5 4 34 34 H 1.09002 * 109.46716 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47486 * 299.99934 * 7 5 4 36 36 H 1.09001 * 109.47362 * 60.00657 * 7 5 4 37 37 H 0.97000 * 120.00316 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.47448 * 299.99767 * 13 12 10 39 39 H 1.08994 * 109.47123 * 60.00361 * 13 12 10 40 40 H 0.96695 * 113.99915 * 299.99311 * 16 14 13 41 41 H 1.08997 * 109.46987 * 305.00410 * 17 14 13 42 42 H 1.09000 * 109.46685 * 64.99602 * 17 14 13 43 43 H 0.96992 * 119.99994 * 359.97438 * 18 17 14 44 44 H 0.97009 * 119.99585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0993 0.0000 4 6 3.5065 0.9744 0.0005 5 6 4.4822 2.1230 0.0012 6 6 4.2625 2.9781 1.2507 7 6 4.2627 2.9791 -1.2478 8 16 3.9447 -0.6780 -0.0064 9 6 2.2439 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0005 11 8 0.5173 -2.6998 -0.0004 12 7 2.5678 -3.5556 0.0016 13 6 2.0436 -4.9236 0.0022 14 6 3.2081 -5.9160 0.0040 15 1 3.8172 -5.7599 0.8945 16 8 4.0087 -5.7131 -1.1622 17 6 2.6608 -7.3447 0.0053 18 7 3.7708 -8.2929 0.1274 19 6 3.5218 -9.6392 0.1500 20 1 2.5071 -10.0021 0.0783 21 6 4.5736 -10.5377 0.2663 22 7 5.8101 -10.0955 0.3543 23 14 4.2339 -12.3744 0.2979 24 1 4.2593 -12.9063 -1.0882 25 1 5.2744 -13.0562 1.1089 26 1 2.8981 -12.6204 0.8983 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 5.5006 1.7345 0.0010 31 1 4.9679 3.8091 1.2509 32 1 4.4189 2.3681 2.1404 33 1 3.2440 3.3665 1.2508 34 1 4.9687 3.8096 -1.2476 35 1 4.4192 2.3699 -2.1380 36 1 3.2443 3.3675 -1.2477 37 1 3.5258 -3.4033 0.0027 38 1 1.4334 -5.0785 0.8920 39 1 1.4343 -5.0795 -0.8880 40 1 3.5306 -5.8358 -1.9937 41 1 1.9798 -7.4721 0.8468 42 1 2.1257 -7.5296 -0.9262 43 1 4.6821 -7.9671 0.1915 44 1 6.5451 -10.7234 0.4351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497112777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:18 Heat of formation + Delta-G solvation = -48.027556 kcal Electronic energy + Delta-G solvation = -24746.957833 eV Core-core repulsion = 21018.944428 eV Total energy + Delta-G solvation = -3728.013405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69506 -39.49568 -37.66711 -35.98431 -34.50868 -34.05251 -31.55502 -31.31456 -29.72207 -28.12719 -27.63049 -25.66512 -25.31968 -22.93362 -21.75901 -21.51866 -21.18031 -19.52724 -18.19382 -17.28164 -17.09439 -16.29115 -16.14393 -15.84611 -15.54699 -15.22099 -14.58263 -14.50000 -14.45586 -14.06273 -13.79031 -13.68408 -13.60068 -13.03596 -12.81893 -12.73039 -12.70450 -12.44400 -12.36180 -12.09220 -11.91298 -11.65293 -11.63259 -11.48531 -10.99199 -10.83829 -10.68563 -10.29513 -10.20162 -9.97843 -9.83673 -9.80973 -9.55855 -9.28200 -8.99573 -8.92937 -6.97090 -5.78785 -3.08634 -0.05549 0.85079 1.26198 2.15971 2.92195 2.96454 3.42123 3.47120 3.48948 3.55885 4.28004 4.48099 4.50756 4.56975 4.57141 4.67716 4.77705 4.89366 4.94090 5.17526 5.19973 5.28933 5.37369 5.42872 5.47936 5.52732 5.54281 5.56895 5.61734 5.72249 5.76237 5.82370 5.89129 6.07060 6.15679 6.28035 6.47036 6.62503 7.21949 7.36202 7.66084 7.86798 7.96833 8.39188 9.50954 10.06970 10.42642 11.43524 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.002116 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.554981 B =13227.024202 C =14060.014935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.151 3.849 3 N -0.474 5.474 4 C 0.070 3.930 5 C -0.020 4.020 6 C -0.140 4.140 7 C -0.140 4.140 8 S 0.164 5.836 9 C -0.302 4.302 10 C 0.596 3.404 11 O -0.526 6.526 12 N -0.715 5.715 13 C 0.090 3.910 14 C 0.088 3.912 15 H 0.106 0.894 16 O -0.553 6.553 17 C 0.128 3.872 18 N -0.726 5.726 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.374 0.626 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.388 0.612 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 28.511 -1.185 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.013 3.987 3 N -0.188 5.188 4 C -0.205 4.205 5 C -0.042 4.042 6 C -0.199 4.199 7 C -0.199 4.199 8 S 0.423 5.577 9 C -0.426 4.426 10 C 0.381 3.619 11 O -0.405 6.405 12 N -0.366 5.366 13 C -0.034 4.034 14 C 0.028 3.972 15 H 0.123 0.877 16 O -0.357 6.357 17 C -0.001 4.001 18 N -0.371 5.371 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.221 0.779 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.223 0.777 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.520 28.244 -0.736 28.472 hybrid contribution -0.645 -1.079 -0.353 1.306 sum -4.164 27.165 -1.089 27.504 Atomic orbital electron populations 1.20665 0.85938 1.04494 1.03722 1.20676 0.98638 0.84866 0.94538 1.65996 1.04253 1.31164 1.17385 1.27456 0.94459 0.98252 1.00374 1.19949 0.95047 0.91055 0.98177 1.21814 1.03218 0.99285 0.95597 1.21816 1.03214 0.99289 0.95606 1.84040 1.05379 1.02253 1.66026 1.25452 0.96144 0.99093 1.21898 1.16663 0.86126 0.82409 0.76679 1.90788 1.14205 1.84988 1.50502 1.45815 1.09958 1.05988 1.74864 1.22175 0.97513 0.80117 1.03572 1.22422 0.91287 0.93769 0.89716 0.87668 1.86580 1.40541 1.92899 1.15725 1.21189 0.92346 0.87692 0.98857 1.42231 1.04189 1.01966 1.88676 1.19216 0.92964 0.82522 1.42837 0.91174 1.24771 0.95258 0.98108 1.02742 1.69677 0.97879 1.33409 1.56829 0.86170 0.77072 0.85338 0.77474 1.21668 1.21719 1.20729 0.90106 0.88109 0.90797 0.88928 0.91348 0.92370 0.91318 0.91348 0.92380 0.91313 0.76208 0.90012 0.90641 0.77924 0.95286 0.95840 0.77722 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.69 36.00 0.35 -0.59 16 2 C 0.15 1.77 6.79 -83.90 -0.57 1.20 16 3 N -0.47 -5.18 10.48 -7.71 -0.08 -5.26 16 4 C 0.07 0.64 5.90 -13.29 -0.08 0.56 16 5 C -0.02 -0.13 3.35 -91.77 -0.31 -0.43 16 6 C -0.14 -0.80 9.17 37.16 0.34 -0.46 16 7 C -0.14 -0.80 9.17 37.16 0.34 -0.46 16 8 S 0.16 1.51 22.29 -107.50 -2.40 -0.89 16 9 C -0.30 -3.59 6.48 -37.09 -0.24 -3.83 16 10 C 0.60 8.00 7.78 -12.85 -0.10 7.90 16 11 O -0.53 -8.26 14.27 5.20 0.07 -8.18 16 12 N -0.71 -8.80 5.44 -61.62 -0.34 -9.14 16 13 C 0.09 1.17 5.34 -4.04 -0.02 1.15 16 14 C 0.09 1.33 3.08 -26.73 -0.08 1.25 16 15 H 0.11 1.65 8.14 -51.92 -0.42 1.23 16 16 O -0.55 -8.55 13.03 -35.23 -0.46 -9.01 16 17 C 0.13 2.44 5.90 -4.04 -0.02 2.41 16 18 N -0.73 -18.22 5.55 -59.91 -0.33 -18.55 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.18 6.01 -51.93 -0.31 0.87 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.40 4.56 7.53 -40.82 -0.31 4.26 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.37 4.78 9.05 45.56 0.41 5.19 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.39 10.43 7.67 -40.82 -0.31 10.12 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -33.38 383.51 -8.67 -42.06 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.98 Total: 12.06 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.64 Total: 1.28 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.02 Total: -60.46 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.38 Total: -17.19 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.40 Total: -0.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.38 -8.67 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497112777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds