Wall clock time and date at job start Tue Mar 31 2020 15:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30940 * 122.90462 * 2 1 4 4 C 1.29432 * 117.36423 * 179.97438 * 3 2 1 5 5 C 1.50706 * 124.80579 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47238 * 60.02062 * 5 4 3 7 7 C 1.52999 * 109.46573 * 300.02088 * 5 4 3 8 8 S 1.70948 * 110.39220 * 0.26684 * 4 3 2 9 9 C 1.35661 * 122.90617 * 179.97438 * 2 1 3 10 10 C 1.46691 * 126.12780 * 0.02796 * 9 2 1 11 11 O 1.21686 * 119.99806 * 0.02562 * 10 9 2 12 12 N 1.34772 * 119.99875 * 180.02562 * 10 9 2 13 13 C 1.46499 * 119.99727 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47120 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.46909 * 59.99897 * 14 13 12 16 16 O 1.42903 * 109.46867 * 300.00338 * 14 13 12 17 17 C 1.52997 * 109.47589 * 179.97438 * 14 13 12 18 18 N 1.46497 * 109.47492 * 185.00004 * 17 14 13 19 19 C 1.36935 * 119.99715 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00367 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99589 * 180.02562 * 19 18 17 22 22 N 1.31613 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99832 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46975 * 89.99814 * 23 21 19 25 25 H 1.48498 * 109.46742 * 209.99622 * 23 21 19 26 26 H 1.48503 * 109.46879 * 329.99574 * 23 21 19 27 27 H 1.09000 * 109.47540 * 90.01407 * 1 2 3 28 28 H 1.09000 * 109.47306 * 210.02365 * 1 2 3 29 29 H 1.09005 * 109.46878 * 330.01937 * 1 2 3 30 30 H 1.08996 * 109.46822 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46832 * 60.00314 * 6 5 4 33 33 H 1.09004 * 109.47261 * 300.00295 * 6 5 4 34 34 H 1.09002 * 109.46716 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.47486 * 299.99934 * 7 5 4 36 36 H 1.09001 * 109.47362 * 60.00657 * 7 5 4 37 37 H 0.97000 * 120.00316 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.47448 * 299.99767 * 13 12 10 39 39 H 1.08994 * 109.47123 * 60.00361 * 13 12 10 40 40 H 0.96695 * 113.99915 * 299.99311 * 16 14 13 41 41 H 1.08997 * 109.46987 * 305.00410 * 17 14 13 42 42 H 1.09000 * 109.46685 * 64.99602 * 17 14 13 43 43 H 0.96992 * 119.99994 * 359.97438 * 18 17 14 44 44 H 0.97009 * 119.99585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0993 0.0000 4 6 3.5065 0.9744 0.0005 5 6 4.4822 2.1230 0.0012 6 6 4.2625 2.9781 1.2507 7 6 4.2627 2.9791 -1.2478 8 16 3.9447 -0.6780 -0.0064 9 6 2.2439 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0005 11 8 0.5173 -2.6998 -0.0004 12 7 2.5678 -3.5556 0.0016 13 6 2.0436 -4.9236 0.0022 14 6 3.2081 -5.9160 0.0040 15 1 3.8172 -5.7599 0.8945 16 8 4.0087 -5.7131 -1.1622 17 6 2.6608 -7.3447 0.0053 18 7 3.7708 -8.2929 0.1274 19 6 3.5218 -9.6392 0.1500 20 1 2.5071 -10.0021 0.0783 21 6 4.5736 -10.5377 0.2663 22 7 5.8101 -10.0955 0.3543 23 14 4.2339 -12.3744 0.2979 24 1 4.2593 -12.9063 -1.0882 25 1 5.2744 -13.0562 1.1089 26 1 2.8981 -12.6204 0.8983 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5136 30 1 5.5006 1.7345 0.0010 31 1 4.9679 3.8091 1.2509 32 1 4.4189 2.3681 2.1404 33 1 3.2440 3.3665 1.2508 34 1 4.9687 3.8096 -1.2476 35 1 4.4192 2.3699 -2.1380 36 1 3.2443 3.3675 -1.2477 37 1 3.5258 -3.4033 0.0027 38 1 1.4334 -5.0785 0.8920 39 1 1.4343 -5.0795 -0.8880 40 1 3.5306 -5.8358 -1.9937 41 1 1.9798 -7.4721 0.8468 42 1 2.1257 -7.5296 -0.9262 43 1 4.6821 -7.9671 0.1915 44 1 6.5451 -10.7234 0.4351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497112777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:17 Heat of formation + Delta-G solvation = -73.894262 kcal Electronic energy + Delta-G solvation = -24748.079498 eV Core-core repulsion = 21018.944428 eV Total energy + Delta-G solvation = -3729.135070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56829 -40.48151 -38.94173 -36.56552 -36.11362 -35.41811 -33.23463 -32.28401 -31.02823 -29.27190 -28.06264 -26.97329 -26.28103 -24.60978 -22.87050 -22.72850 -21.95501 -20.45953 -19.22649 -19.00842 -18.13024 -17.46829 -17.29037 -16.71798 -16.54677 -16.39136 -16.06521 -15.54827 -15.52051 -15.15848 -14.92848 -14.78561 -14.55286 -14.29276 -14.15615 -13.87001 -13.57445 -13.35284 -13.28806 -12.96716 -12.93697 -12.75944 -12.63643 -12.41939 -12.16914 -12.13130 -12.00654 -11.97882 -11.82723 -11.31796 -11.01975 -10.96122 -10.72749 -10.65134 -10.27631 -9.80330 -9.02103 -7.95642 -5.25156 -0.87297 0.08314 0.47019 1.29886 1.47557 1.49251 1.57697 1.89749 1.99523 2.55421 2.87172 3.35008 3.44751 3.52009 3.65909 3.68923 3.95176 3.98695 4.03975 4.10388 4.17732 4.38375 4.40268 4.58519 4.65070 4.66655 4.68917 4.80480 4.81245 4.91618 4.92680 4.93383 5.07878 5.11948 5.19186 5.28969 5.33013 5.40321 5.47913 6.24001 6.26033 6.54125 6.76038 6.94817 7.32698 8.07624 8.30642 9.27547 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.002116 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.554981 B =13227.024202 C =14060.014935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 N -0.491 5.491 4 C 0.075 3.925 5 C -0.024 4.024 6 C -0.137 4.137 7 C -0.138 4.138 8 S 0.196 5.804 9 C -0.331 4.331 10 C 0.596 3.404 11 O -0.555 6.555 12 N -0.709 5.709 13 C 0.103 3.897 14 C 0.107 3.893 15 H 0.100 0.900 16 O -0.563 6.563 17 C 0.123 3.877 18 N -0.740 5.740 19 C -0.248 4.248 20 H 0.077 0.923 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.269 1.269 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.386 0.614 41 H 0.035 0.965 42 H 0.033 0.967 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 29.589 -1.393 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 N -0.206 5.206 4 C -0.200 4.200 5 C -0.046 4.046 6 C -0.196 4.196 7 C -0.196 4.196 8 S 0.457 5.543 9 C -0.455 4.455 10 C 0.383 3.617 11 O -0.435 6.435 12 N -0.360 5.360 13 C -0.022 4.022 14 C 0.047 3.953 15 H 0.118 0.882 16 O -0.370 6.370 17 C -0.004 4.004 18 N -0.383 5.383 19 C -0.380 4.380 20 H 0.095 0.905 21 C -0.269 4.269 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.194 1.194 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.244 0.756 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.366 29.339 -0.956 29.547 hybrid contribution -0.703 -1.288 -0.308 1.500 sum -4.069 28.051 -1.264 28.373 Atomic orbital electron populations 1.20622 0.85669 1.04304 1.03896 1.20904 0.99229 0.85187 0.94065 1.66058 1.05040 1.30857 1.18621 1.28102 0.94490 0.99158 0.98215 1.20209 0.95227 0.90342 0.98789 1.21807 1.03046 0.99762 0.95025 1.21807 1.03040 0.99763 0.95031 1.83865 1.03155 1.01924 1.65393 1.25366 0.97989 0.98318 1.23841 1.16840 0.85789 0.83055 0.76043 1.90769 1.15330 1.85539 1.51897 1.45707 1.10185 1.05529 1.74584 1.21956 0.96368 0.79929 1.03928 1.22111 0.91590 0.91994 0.89616 0.88219 1.86558 1.41223 1.92763 1.16414 1.21393 0.90962 0.88825 0.99210 1.42417 1.05083 1.02107 1.88713 1.19643 0.93188 0.84043 1.41114 0.90502 1.25609 0.95188 1.02526 1.03545 1.69833 0.98661 1.34560 1.58752 0.85120 0.77154 0.80042 0.77302 1.21378 1.22196 1.19376 0.89714 0.89551 0.89604 0.86826 0.89154 0.92684 0.92673 0.89154 0.92684 0.92672 0.75554 0.89923 0.90102 0.76519 0.94668 0.94908 0.79137 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.69 71.23 0.69 -1.12 16 2 C 0.15 3.36 6.79 42.09 0.29 3.65 16 3 N -0.49 -10.37 10.48 -178.29 -1.87 -12.23 16 4 C 0.08 1.27 5.90 88.46 0.52 1.79 16 5 C -0.02 -0.24 3.35 -11.54 -0.04 -0.28 16 6 C -0.14 -1.28 9.17 71.98 0.66 -0.62 16 7 C -0.14 -1.28 9.17 71.98 0.66 -0.62 16 8 S 0.20 3.35 22.29 -56.49 -1.26 2.09 16 9 C -0.33 -7.72 6.48 23.88 0.15 -7.56 16 10 C 0.60 15.79 7.78 86.45 0.67 16.47 16 11 O -0.55 -17.44 14.27 -4.30 -0.06 -17.50 16 12 N -0.71 -16.82 5.44 -467.08 -2.54 -19.36 16 13 C 0.10 2.54 5.34 86.38 0.46 3.00 16 14 C 0.11 3.12 3.08 30.59 0.09 3.22 16 15 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 16 O -0.56 -16.80 13.03 -148.98 -1.94 -18.74 16 17 C 0.12 4.58 5.90 86.38 0.51 5.09 16 18 N -0.74 -37.00 5.55 -343.46 -1.91 -38.91 16 19 C -0.25 -13.77 9.99 84.04 0.84 -12.93 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 22 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 23 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 2.08 6.01 -2.39 -0.01 2.07 16 29 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.41 8.79 7.53 -92.71 -0.70 8.09 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.39 9.33 9.05 -74.06 -0.67 8.66 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.38 20.39 7.67 -92.71 -0.71 19.68 16 44 H 0.25 14.94 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -71.10 383.51 -2.33 -73.42 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -1.04 Total: 36.15 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.98 Total: 6.17 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -6.03 Total: -129.61 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -2.00 Total: -36.24 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.26 Total: 2.09 kcal Total: -71.10 -2.33 -73.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497112777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.470 kcal (2) G-P(sol) polarization free energy of solvation -71.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds