Wall clock time and date at job start Tue Mar 31 2020 15:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31888 * 119.92997 * 2 1 4 4 N 1.28288 * 122.58253 * 180.02562 * 3 2 1 5 5 C 1.32464 * 122.18027 * 359.72259 * 4 3 2 6 6 N 1.38821 * 120.24776 * 180.29615 * 5 4 3 7 7 C 1.40518 * 120.00114 * 0.26852 * 6 5 4 8 8 C 1.40681 * 126.08398 * 359.68522 * 7 6 5 9 9 N 1.30910 * 108.39292 * 179.85074 * 8 7 6 10 10 N 1.40074 * 108.40850 * 0.41195 * 9 8 7 11 11 C 1.37312 * 126.06570 * 179.70155 * 10 9 8 12 12 H 1.08000 * 119.99762 * 180.02562 * 11 10 9 13 13 C 1.38968 * 120.00092 * 0.03779 * 11 10 9 14 14 N 1.31305 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99587 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47008 * 90.00353 * 15 13 11 17 17 H 1.48505 * 109.47128 * 209.99883 * 15 13 11 18 18 H 1.48499 * 109.47574 * 330.00055 * 15 13 11 19 19 C 1.35688 * 126.08495 * 179.97438 * 7 6 5 20 20 C 1.40527 * 119.50133 * 0.56351 * 5 4 3 21 21 C 1.48355 * 121.15912 * 179.74018 * 20 5 4 22 22 N 1.34084 * 126.67927 * 179.74132 * 21 20 5 23 23 N 1.28980 * 107.26606 * 179.73125 * 22 21 20 24 24 N 1.28734 * 108.95552 * 359.97438 * 23 22 21 25 25 H 0.96995 * 125.33445 * 180.02562 * 24 23 22 26 26 N 1.28871 * 109.32464 * 0.02562 * 24 23 22 27 27 C 1.38534 * 119.92783 * 180.02562 * 2 1 3 28 28 C 1.50698 * 121.04409 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.46203 * 269.97430 * 1 2 3 30 30 H 1.09000 * 109.47061 * 29.96667 * 1 2 3 31 31 H 1.08995 * 109.47218 * 149.97539 * 1 2 3 32 32 H 0.97004 * 119.99976 * 180.26290 * 6 5 4 33 33 H 1.07996 * 125.80596 * 359.97438 * 8 7 6 34 34 H 0.96994 * 120.00123 * 179.97438 * 14 13 11 35 35 H 1.08000 * 126.24543 * 359.95911 * 19 7 6 36 36 H 1.08999 * 109.47321 * 269.97707 * 28 27 2 37 37 H 1.09009 * 109.47311 * 29.97728 * 28 27 2 38 38 H 1.09000 * 109.47240 * 149.97587 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1651 1.1430 0.0000 4 7 3.4466 1.2024 -0.0005 5 6 4.2032 0.1151 0.0044 6 7 5.5870 0.2261 0.0099 7 6 6.1901 1.4952 0.0159 8 6 5.5188 2.7316 0.0109 9 7 6.4133 3.6873 0.0225 10 7 7.6859 3.1021 0.0258 11 6 8.8841 3.7728 0.0314 12 1 9.8121 3.2203 0.0331 13 6 8.9026 5.1623 0.0352 14 7 7.7744 5.8340 0.0328 15 14 10.5327 6.0746 0.0421 16 1 10.9685 6.3201 -1.3561 17 1 10.3706 7.3726 0.7451 18 1 11.5550 5.2565 0.7427 19 6 7.5235 1.7465 0.0221 20 6 3.5946 -1.1515 -0.0017 21 6 4.4065 -2.3933 -0.0023 22 7 3.9447 -3.6521 -0.0029 23 7 4.9692 -4.4356 -0.0090 24 7 6.0410 -3.7226 -0.0127 25 1 6.9463 -4.0707 -0.0179 26 7 5.7225 -2.4739 -0.0085 27 6 2.1982 -1.2006 -0.0005 28 6 1.4670 -2.5183 -0.0017 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3633 -0.8897 -0.5142 32 1 6.1376 -0.5725 0.0096 33 1 4.4476 2.8689 0.0013 34 1 7.7873 6.8039 0.0358 35 1 8.3122 1.0087 0.0239 36 1 1.2906 -2.8369 1.0257 37 1 0.5124 -2.4037 -0.5155 38 1 2.0689 -3.2674 -0.5162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592449364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:33 Heat of formation + Delta-G solvation = 286.994451 kcal Electronic energy + Delta-G solvation = -26835.121958 eV Core-core repulsion = 22947.237404 eV Total energy + Delta-G solvation = -3887.884553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.67984 -40.88693 -39.44815 -36.22189 -35.44127 -34.23308 -33.60861 -32.88030 -31.54109 -30.24518 -28.75640 -27.88845 -26.72936 -25.06841 -24.89568 -24.50946 -22.09291 -21.88015 -20.48442 -19.73281 -19.33561 -17.96695 -17.37548 -17.25336 -16.29994 -15.97457 -15.45153 -15.26449 -14.99551 -14.40493 -14.06687 -13.68790 -13.53495 -13.28963 -13.11668 -12.97186 -12.84440 -12.55035 -12.40457 -11.84716 -11.69238 -11.64198 -11.54675 -11.52084 -11.37367 -11.10687 -11.04752 -10.94913 -10.54461 -10.29662 -9.44024 -9.32052 -9.20040 -8.80507 -8.47976 -8.03502 -6.56466 -6.49444 -4.21292 0.43350 0.96618 1.38559 1.98841 2.18494 2.95796 3.04111 3.09509 3.41873 3.46664 3.53070 3.84672 3.88302 3.91386 4.38863 4.44144 4.70513 4.71827 4.84455 5.01529 5.02962 5.11372 5.22733 5.41034 5.48327 5.57294 5.69119 5.86655 5.88223 6.04526 6.12732 6.23718 6.26265 6.45557 6.53825 6.81942 6.95396 7.19496 7.66892 7.86698 7.90642 8.09930 8.30089 8.70335 9.23503 9.36906 9.66696 10.39273 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.003318 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.564575 B = 8436.487567 C =10118.584998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.021 4.021 3 N -0.174 5.174 4 N -0.286 5.286 5 C 0.369 3.631 6 N -0.580 5.580 7 C -0.063 4.063 8 C -0.028 4.028 9 N -0.258 5.258 10 N -0.142 5.142 11 C -0.322 4.322 12 H 0.116 0.884 13 C 0.047 3.953 14 N -0.767 5.767 15 Si 0.934 3.066 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.264 1.264 19 C -0.083 4.083 20 C -0.115 4.115 21 C 0.247 3.753 22 N -0.268 5.268 23 N -0.047 5.047 24 N -0.221 5.221 25 H 0.477 0.523 26 N -0.311 5.311 27 C 0.013 3.987 28 C -0.128 4.128 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.190 0.810 34 H 0.275 0.725 35 H 0.144 0.856 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 -17.771 -0.109 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 N -0.020 5.020 4 N -0.141 5.141 5 C 0.123 3.877 6 N -0.203 5.203 7 C -0.170 4.170 8 C -0.205 4.205 9 N -0.088 5.088 10 N 0.092 4.908 11 C -0.455 4.455 12 H 0.133 0.867 13 C -0.171 4.171 14 N -0.393 5.393 15 Si 0.758 3.242 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.189 1.189 19 C -0.235 4.235 20 C -0.135 4.135 21 C -0.032 4.032 22 N -0.141 5.141 23 N -0.042 5.042 24 N -0.067 5.067 25 H 0.331 0.669 26 N -0.164 5.164 27 C 0.000 4.000 28 C -0.185 4.185 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.206 0.794 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.506 -15.119 -0.101 16.459 hybrid contribution 1.704 -2.193 0.034 2.778 sum -4.802 -17.312 -0.067 17.966 Atomic orbital electron populations 1.20506 0.87867 1.03306 1.02817 1.22225 0.98573 0.89061 1.07120 1.72621 1.01335 1.24810 1.03204 1.73318 0.98056 1.22412 1.20265 1.19885 0.87098 0.89289 0.91432 1.41614 1.00841 1.08084 1.69775 1.17351 0.91210 0.84186 1.24248 1.24473 1.00715 0.88354 1.06940 1.78282 0.86018 1.18946 1.25561 1.44591 1.05593 1.01737 1.38890 1.19869 0.82189 0.90057 1.53351 0.86683 1.25633 0.99129 0.96812 0.95513 1.70215 1.25888 1.08231 1.34970 0.85833 0.80332 0.79046 0.78967 1.19587 1.20035 1.18864 1.21171 0.94810 0.87277 1.20208 1.17473 0.91978 0.86995 1.17080 1.23197 0.86509 0.93169 1.00366 1.76083 1.19909 0.99317 1.18817 1.78883 0.89059 1.22015 1.14216 1.47599 1.11941 1.01275 1.45895 0.66887 1.74422 1.15989 1.02087 1.23879 1.20731 0.91030 0.97632 0.90647 1.21190 1.00551 0.92993 1.03797 0.90864 0.90496 0.90792 0.73946 0.79358 0.91394 0.83875 0.89764 0.90302 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.81 36.01 0.35 -0.49 16 2 C -0.02 -0.30 6.86 -82.46 -0.57 -0.87 16 3 N -0.17 -3.14 11.40 33.58 0.38 -2.75 16 4 N -0.29 -5.80 7.67 31.40 0.24 -5.56 16 5 C 0.37 6.97 7.55 -154.61 -1.17 5.81 16 6 N -0.58 -11.38 5.55 -9.81 -0.05 -11.43 16 7 C -0.06 -1.49 6.92 -83.86 -0.58 -2.07 16 8 C -0.03 -0.73 10.85 -17.02 -0.18 -0.92 16 9 N -0.26 -7.48 10.40 30.81 0.32 -7.16 16 10 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 11 C -0.32 -8.53 10.25 -14.83 -0.15 -8.68 16 12 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 13 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 14 N -0.77 -21.33 11.81 55.49 0.66 -20.68 16 15 Si 0.93 18.87 29.55 -169.99 -5.02 13.84 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 C -0.08 -1.99 11.50 -16.37 -0.19 -2.18 16 20 C -0.12 -1.81 5.94 -104.31 -0.62 -2.43 16 21 C 0.25 3.43 7.81 -156.29 -1.22 2.21 16 22 N -0.27 -3.32 9.36 32.14 0.30 -3.02 16 23 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 24 N -0.22 -1.94 7.90 60.35 0.48 -1.46 16 25 H 0.48 1.86 8.96 -340.36 -3.05 -1.19 16 26 N -0.31 -3.89 9.49 32.16 0.31 -3.59 16 27 C 0.01 0.18 5.95 -103.96 -0.62 -0.44 16 28 C -0.13 -1.24 8.94 36.00 0.32 -0.92 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.53 6.04 -51.93 -0.31 0.22 16 32 H 0.42 7.18 5.59 -40.82 -0.23 6.95 16 33 H 0.19 4.77 5.61 -52.49 -0.29 4.48 16 34 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.14 2.90 8.06 -52.49 -0.42 2.48 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.58 6.07 -51.92 -0.31 0.26 16 38 H 0.10 1.03 5.41 -51.93 -0.28 0.75 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -34.28 325.84 -7.15 -41.43 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.72 Total: 8.95 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -4.72 Total: -9.88 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 3.40 Total: -59.27 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.28 -7.15 -41.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592449364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 328.429 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 294.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 286.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds