Wall clock time and date at job start Tue Mar 31 2020 15:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31888 * 119.92997 * 2 1 4 4 N 1.28288 * 122.58253 * 180.02562 * 3 2 1 5 5 C 1.32464 * 122.18027 * 359.72259 * 4 3 2 6 6 N 1.38821 * 120.24776 * 180.29615 * 5 4 3 7 7 C 1.40518 * 120.00114 * 0.26852 * 6 5 4 8 8 C 1.40681 * 126.08398 * 359.68522 * 7 6 5 9 9 N 1.30910 * 108.39292 * 179.85074 * 8 7 6 10 10 N 1.40074 * 108.40850 * 0.41195 * 9 8 7 11 11 C 1.37312 * 126.06570 * 179.70155 * 10 9 8 12 12 H 1.08000 * 119.99762 * 180.02562 * 11 10 9 13 13 C 1.38968 * 120.00092 * 0.03779 * 11 10 9 14 14 N 1.31305 * 120.00440 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99587 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47008 * 90.00353 * 15 13 11 17 17 H 1.48505 * 109.47128 * 209.99883 * 15 13 11 18 18 H 1.48499 * 109.47574 * 330.00055 * 15 13 11 19 19 C 1.35688 * 126.08495 * 179.97438 * 7 6 5 20 20 C 1.40527 * 119.50133 * 0.56351 * 5 4 3 21 21 C 1.48355 * 121.15912 * 179.74018 * 20 5 4 22 22 N 1.34084 * 126.67927 * 179.74132 * 21 20 5 23 23 N 1.28980 * 107.26606 * 179.73125 * 22 21 20 24 24 N 1.28734 * 108.95552 * 359.97438 * 23 22 21 25 25 H 0.96995 * 125.33445 * 180.02562 * 24 23 22 26 26 N 1.28871 * 109.32464 * 0.02562 * 24 23 22 27 27 C 1.38534 * 119.92783 * 180.02562 * 2 1 3 28 28 C 1.50698 * 121.04409 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.46203 * 269.97430 * 1 2 3 30 30 H 1.09000 * 109.47061 * 29.96667 * 1 2 3 31 31 H 1.08995 * 109.47218 * 149.97539 * 1 2 3 32 32 H 0.97004 * 119.99976 * 180.26290 * 6 5 4 33 33 H 1.07996 * 125.80596 * 359.97438 * 8 7 6 34 34 H 0.96994 * 120.00123 * 179.97438 * 14 13 11 35 35 H 1.08000 * 126.24543 * 359.95911 * 19 7 6 36 36 H 1.08999 * 109.47321 * 269.97707 * 28 27 2 37 37 H 1.09009 * 109.47311 * 29.97728 * 28 27 2 38 38 H 1.09000 * 109.47240 * 149.97587 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1651 1.1430 0.0000 4 7 3.4466 1.2024 -0.0005 5 6 4.2032 0.1151 0.0044 6 7 5.5870 0.2261 0.0099 7 6 6.1901 1.4952 0.0159 8 6 5.5188 2.7316 0.0109 9 7 6.4133 3.6873 0.0225 10 7 7.6859 3.1021 0.0258 11 6 8.8841 3.7728 0.0314 12 1 9.8121 3.2203 0.0331 13 6 8.9026 5.1623 0.0352 14 7 7.7744 5.8340 0.0328 15 14 10.5327 6.0746 0.0421 16 1 10.9685 6.3201 -1.3561 17 1 10.3706 7.3726 0.7451 18 1 11.5550 5.2565 0.7427 19 6 7.5235 1.7465 0.0221 20 6 3.5946 -1.1515 -0.0017 21 6 4.4065 -2.3933 -0.0023 22 7 3.9447 -3.6521 -0.0029 23 7 4.9692 -4.4356 -0.0090 24 7 6.0410 -3.7226 -0.0127 25 1 6.9463 -4.0707 -0.0179 26 7 5.7225 -2.4739 -0.0085 27 6 2.1982 -1.2006 -0.0005 28 6 1.4670 -2.5183 -0.0017 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3633 -0.8897 -0.5142 32 1 6.1376 -0.5725 0.0096 33 1 4.4476 2.8689 0.0013 34 1 7.7873 6.8039 0.0358 35 1 8.3122 1.0087 0.0239 36 1 1.2906 -2.8369 1.0257 37 1 0.5124 -2.4037 -0.5155 38 1 2.0689 -3.2674 -0.5162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592449364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:32 Heat of formation + Delta-G solvation = 262.719241 kcal Electronic energy + Delta-G solvation = -26836.174610 eV Core-core repulsion = 22947.237404 eV Total energy + Delta-G solvation = -3888.937205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.61355 -42.21154 -41.29613 -37.64535 -36.53249 -35.36427 -35.19891 -34.13091 -32.71804 -32.17853 -30.07783 -29.13481 -28.15943 -26.68971 -26.05089 -25.51867 -23.33572 -23.18318 -22.23732 -21.36458 -20.34065 -19.69194 -18.61020 -18.29578 -17.79547 -17.39838 -17.03874 -16.52726 -16.50268 -15.64842 -15.41923 -15.36245 -14.92131 -14.70701 -14.29154 -14.05141 -13.81957 -13.61915 -13.44784 -13.34178 -13.26559 -12.97521 -12.87663 -12.69263 -12.56040 -12.50398 -12.33237 -12.09221 -12.07829 -11.56772 -11.21389 -10.79429 -10.47633 -10.40736 -10.10819 -9.95503 -8.45330 -8.22684 -6.19963 -0.69775 0.05085 0.12693 1.09767 1.22475 1.32029 1.39702 1.57506 1.77803 1.99496 2.21859 2.36724 2.42070 2.72902 2.82486 2.86405 3.10086 3.28219 3.64810 3.80369 3.87870 3.97475 4.27780 4.41171 4.43837 4.45885 4.65633 4.78691 4.89377 4.93360 4.99432 5.03718 5.10191 5.24558 5.30623 5.32641 5.51912 5.59921 5.87367 6.04764 6.43704 6.60239 6.83296 7.00612 7.46970 7.70768 7.94294 8.53987 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.003318 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.564575 B = 8436.487567 C =10118.584998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.002 4.002 3 N -0.218 5.218 4 N -0.333 5.333 5 C 0.352 3.648 6 N -0.591 5.591 7 C -0.043 4.043 8 C -0.052 4.052 9 N -0.306 5.306 10 N -0.167 5.167 11 C -0.355 4.355 12 H 0.138 0.862 13 C -0.005 4.005 14 N -0.822 5.822 15 Si 1.019 2.981 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.246 1.246 19 C -0.087 4.087 20 C -0.110 4.110 21 C 0.229 3.771 22 N -0.267 5.267 23 N -0.040 5.040 24 N -0.191 5.191 25 H 0.496 0.504 26 N -0.320 5.320 27 C 0.018 3.982 28 C -0.124 4.124 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.427 0.573 33 H 0.188 0.812 34 H 0.277 0.723 35 H 0.179 0.821 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 -21.173 -0.067 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 N -0.059 5.059 4 N -0.185 5.185 5 C 0.107 3.893 6 N -0.220 5.220 7 C -0.150 4.150 8 C -0.228 4.228 9 N -0.138 5.138 10 N 0.064 4.936 11 C -0.486 4.486 12 H 0.155 0.845 13 C -0.217 4.217 14 N -0.450 5.450 15 Si 0.838 3.162 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.169 1.169 19 C -0.238 4.238 20 C -0.129 4.129 21 C -0.050 4.050 22 N -0.140 5.140 23 N -0.035 5.035 24 N -0.042 5.042 25 H 0.356 0.644 26 N -0.173 5.173 27 C 0.004 3.996 28 C -0.180 4.180 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.272 0.728 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.196 0.804 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.859 -18.572 -0.059 19.798 hybrid contribution 1.506 -1.531 0.019 2.148 sum -5.353 -20.103 -0.040 20.804 Atomic orbital electron populations 1.20747 0.84263 1.05040 1.04556 1.23090 1.00799 0.88365 1.03034 1.72567 1.00656 1.26944 1.05778 1.73134 0.99384 1.24031 1.21907 1.20115 0.86822 0.90465 0.91941 1.41399 1.01294 1.06624 1.72637 1.17393 0.90986 0.85232 1.21390 1.24571 1.00568 0.89457 1.08220 1.78153 0.87375 1.20915 1.27327 1.44833 1.05357 1.02868 1.40519 1.20580 0.82766 0.91110 1.54176 0.84481 1.26854 1.03260 0.97423 0.94185 1.70400 1.28915 1.08501 1.37157 0.84598 0.75176 0.77227 0.79207 1.18905 1.20087 1.16885 1.21803 0.95989 0.86937 1.19049 1.17677 0.93186 0.86598 1.15437 1.22953 0.86855 0.93127 1.02100 1.76089 1.20478 0.98527 1.18893 1.78847 0.89136 1.21575 1.13931 1.47636 1.12782 1.00063 1.43685 0.64395 1.74333 1.15735 1.03637 1.23608 1.21269 0.90334 0.99267 0.88740 1.21326 1.01291 0.90215 1.05188 0.88920 0.90572 0.87283 0.72796 0.79608 0.91371 0.80361 0.87987 0.87140 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.81 71.24 0.70 -0.71 16 2 C 0.00 -0.05 6.86 42.62 0.29 0.25 16 3 N -0.22 -8.00 11.40 -47.69 -0.54 -8.54 16 4 N -0.33 -14.13 7.67 -54.58 -0.42 -14.55 16 5 C 0.35 13.57 7.55 133.45 1.01 14.57 16 6 N -0.59 -23.60 5.55 -184.95 -1.03 -24.63 16 7 C -0.04 -2.10 6.92 37.75 0.26 -1.84 16 8 C -0.05 -2.88 10.85 85.43 0.93 -1.95 16 9 N -0.31 -18.85 10.40 -56.45 -0.59 -19.44 16 10 N -0.17 -9.56 3.74 -190.00 -0.71 -10.27 16 11 C -0.36 -19.28 10.25 84.01 0.86 -18.42 16 12 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 13 C -0.01 -0.29 5.50 84.95 0.47 0.18 16 14 N -0.82 -48.10 11.81 21.66 0.26 -47.85 16 15 Si 1.02 39.24 29.55 68.60 2.03 41.26 16 16 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 17 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 19 C -0.09 -4.27 11.50 83.37 0.96 -3.31 16 20 C -0.11 -3.34 5.94 -19.67 -0.12 -3.45 16 21 C 0.23 5.93 7.81 137.32 1.07 7.00 16 22 N -0.27 -5.86 9.36 -52.22 -0.49 -6.35 16 23 N -0.04 -0.72 13.47 37.02 0.50 -0.22 16 24 N -0.19 -2.82 7.90 37.02 0.29 -2.52 16 25 H 0.50 2.37 8.96 -347.54 -3.12 -0.74 16 26 N -0.32 -7.38 9.49 -52.17 -0.49 -7.87 16 27 C 0.02 0.43 5.95 -19.43 -0.12 0.31 16 28 C -0.12 -1.87 8.94 71.24 0.64 -1.23 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.01 6.04 -2.39 -0.01 0.99 16 32 H 0.43 14.58 5.59 -92.71 -0.52 14.06 16 33 H 0.19 10.21 5.61 -2.91 -0.02 10.19 16 34 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.18 7.12 8.06 -2.91 -0.02 7.09 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.00 6.07 -2.38 -0.01 0.98 16 38 H 0.10 1.62 5.41 -2.39 -0.01 1.61 16 Total: -1.00 -81.17 325.84 3.31 -77.86 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -2.45 Total: 31.73 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 6.95 Total: -8.60 kcal Atomic # 7 Polarization: -139.03 SS G_CDS: -3.22 Total: -142.26 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.26 kcal Total: -81.17 3.31 -77.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592449364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 340.579 kcal (2) G-P(sol) polarization free energy of solvation -81.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 259.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 262.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds