Wall clock time and date at job start Tue Mar 31 2020 15:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38046 * 126.29329 * 2 1 4 4 C 1.47435 * 126.41375 * 0.02562 * 3 2 1 5 5 O 1.21606 * 119.99471 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99933 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99642 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47194 * 60.00363 * 7 6 4 9 9 C 1.53006 * 109.46995 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 7 6 11 11 F 1.39895 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47248 * 300.00066 * 7 6 4 13 13 O 1.20832 * 120.00139 * 145.00066 * 12 7 6 14 14 O 1.34226 * 120.00201 * 324.99961 * 12 7 6 15 15 C 1.41291 * 107.17372 * 180.26321 * 3 2 1 16 16 N 1.30450 * 108.02207 * 359.59362 * 15 3 2 17 17 N 1.34262 * 126.29256 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.75315 * 359.97438 * 17 2 1 19 19 C 1.50704 * 109.47005 * 90.00212 * 18 17 2 20 20 H 1.07997 * 119.99788 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99988 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00068 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46787 * 60.00160 * 23 21 19 25 25 H 1.48497 * 109.46989 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.46791 * 300.00249 * 23 21 19 27 27 H 1.08998 * 109.47118 * 89.97340 * 1 2 3 28 28 H 1.08995 * 109.47077 * 209.97484 * 1 2 3 29 29 H 1.09002 * 109.47025 * 329.97233 * 1 2 3 30 30 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47230 * 299.99110 * 8 7 6 33 33 H 1.09001 * 109.47375 * 59.99949 * 8 7 6 34 34 H 1.09001 * 109.47002 * 299.99701 * 9 7 6 35 35 H 1.08993 * 109.46955 * 60.00138 * 9 7 6 36 36 H 1.09001 * 109.47289 * 299.99953 * 10 9 7 37 37 H 1.09004 * 109.47261 * 59.99697 * 10 9 7 38 38 H 0.96697 * 117.00347 * 179.97438 * 14 12 7 39 39 H 1.07995 * 125.99007 * 179.73433 * 15 3 2 40 40 H 1.09003 * 109.47063 * 210.00015 * 18 17 2 41 41 H 1.08994 * 109.47377 * 330.00065 * 18 17 2 42 42 H 0.97006 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7877 0.0006 6 7 2.7999 3.5107 0.0010 7 6 2.3644 4.9094 0.0021 8 6 1.5245 5.1811 1.2517 9 6 3.5901 5.8252 0.0018 10 6 3.1353 7.2860 0.0035 11 9 4.2559 8.1234 0.0038 12 6 1.5364 5.1787 -1.2279 13 8 0.6045 5.9459 -1.1729 14 8 1.8342 4.5664 -2.3847 15 6 3.6590 0.6499 -0.0062 16 7 3.6341 -0.6544 -0.0009 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4758 -0.0006 19 6 1.6947 -2.9534 -1.4215 20 1 1.9112 -2.2857 -2.2423 21 6 1.2773 -4.2431 -1.6735 22 7 1.0142 -5.0562 -0.6739 23 14 1.0841 -4.8349 -3.4348 24 1 2.3895 -4.7368 -4.1358 25 1 0.6265 -6.2476 -3.4348 26 1 0.0823 -3.9904 -4.1335 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 3.7461 3.2974 0.0006 31 1 1.2008 6.2219 1.2528 32 1 0.6513 4.5288 1.2515 33 1 2.1234 4.9863 2.1414 34 1 4.1893 5.6306 0.8913 35 1 4.1880 5.6316 -0.8887 36 1 2.5358 7.4810 -0.8857 37 1 2.5374 7.4794 0.8943 38 1 1.2744 4.7706 -3.1463 39 1 4.5448 1.2676 -0.0119 40 1 2.5849 -3.0959 0.5129 41 1 0.8916 -2.5472 0.5135 42 1 0.7201 -5.9635 -0.8513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599978507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:07 Heat of formation + Delta-G solvation = -115.588918 kcal Electronic energy + Delta-G solvation = -28315.020164 eV Core-core repulsion = 24017.863902 eV Total energy + Delta-G solvation = -4297.156262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.00859 -41.24087 -40.65210 -38.85222 -36.63988 -36.02463 -33.97768 -32.79068 -32.01190 -31.15629 -29.17111 -27.41151 -26.72769 -25.67000 -23.90753 -23.47490 -22.19978 -20.46150 -19.83655 -19.15144 -18.21965 -17.53326 -17.23517 -16.82614 -16.62224 -16.44833 -15.40495 -15.26372 -15.09927 -14.94846 -14.73558 -14.54918 -14.20076 -14.03370 -13.66374 -13.26502 -12.97907 -12.73325 -12.61551 -12.44130 -12.32953 -12.14661 -11.91479 -11.82103 -11.71724 -11.56808 -11.51343 -11.17091 -11.14003 -10.90061 -10.77083 -10.39919 -10.24134 -9.99548 -9.49423 -9.30546 -8.73728 -8.65370 -8.00435 -6.36692 -4.44839 1.94232 2.07898 2.67608 2.74843 2.93464 3.17836 3.22085 3.24508 3.38093 3.78908 3.96377 4.20058 4.21564 4.24772 4.57735 4.62617 4.92513 4.98005 5.00441 5.11331 5.20188 5.20617 5.38584 5.46945 5.49842 5.55883 5.69080 5.84879 6.03050 6.08123 6.21490 6.36037 6.40555 6.49717 6.73719 6.86278 7.09253 7.49508 7.52204 7.72370 7.72994 7.73954 8.30010 8.41380 8.60199 9.22256 10.71496 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.002738 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.530836 B =10224.742381 C =10440.215880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.169 3.831 3 C -0.332 4.332 4 C 0.611 3.389 5 O -0.548 6.548 6 N -0.722 5.722 7 C 0.201 3.799 8 C -0.163 4.163 9 C -0.157 4.157 10 C 0.060 3.940 11 F -0.213 7.213 12 C 0.484 3.516 13 O -0.510 6.510 14 O -0.504 6.504 15 C 0.059 3.941 16 N -0.294 5.294 17 N -0.313 5.313 18 C 0.251 3.749 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.406 0.594 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.409 0.591 39 H 0.176 0.824 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 20.587 2.452 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.031 3.969 3 C -0.348 4.348 4 C 0.403 3.597 5 O -0.426 6.426 6 N -0.376 5.376 7 C 0.112 3.888 8 C -0.220 4.220 9 C -0.195 4.195 10 C 0.005 3.995 11 F -0.194 7.194 12 C 0.324 3.676 13 O -0.397 6.397 14 O -0.315 6.315 15 C -0.128 4.128 16 N -0.114 5.114 17 N -0.089 5.089 18 C 0.134 3.866 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.198 1.198 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.242 0.758 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.267 0.733 39 H 0.193 0.807 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.605 19.435 2.861 19.973 hybrid contribution -0.296 0.225 -1.574 1.617 sum 3.308 19.660 1.288 19.978 Atomic orbital electron populations 1.20577 0.86780 1.03829 1.03968 1.21473 0.94955 0.86517 0.93938 1.19523 0.93226 0.91966 1.30061 1.17334 0.84841 0.83909 0.73608 1.90701 1.16644 1.84072 1.51217 1.45723 1.10494 1.03140 1.78281 1.19909 0.93829 0.83782 0.91262 1.22286 1.01646 1.03957 0.94138 1.22436 0.96690 0.93953 1.06430 1.22060 0.85377 0.87218 1.04881 1.92786 1.55303 1.73079 1.98238 1.23635 0.82763 0.76521 0.84651 1.90707 1.28516 1.35269 1.85191 1.84558 1.59497 1.66715 1.20730 1.23727 0.96261 0.92657 1.00136 1.77161 0.98596 1.12240 1.23368 1.49395 1.02478 1.08345 1.48718 1.19865 0.96432 0.70823 0.99471 1.21202 1.47672 0.98169 0.90952 0.91699 1.24919 0.94393 0.95967 0.98322 1.69903 1.44336 1.07231 1.31207 0.86375 0.78899 0.77775 0.83455 1.19872 1.20847 1.19844 0.89813 0.90797 0.88826 0.75840 0.90492 0.88909 0.90544 0.87742 0.88726 0.90467 0.89379 0.73259 0.80686 0.92465 0.92534 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.57 36.00 0.34 -1.29 16 2 C 0.17 3.29 7.01 -81.60 -0.57 2.72 16 3 C -0.33 -5.68 6.13 -105.06 -0.64 -6.32 16 4 C 0.61 9.21 7.14 -12.52 -0.09 9.13 16 5 O -0.55 -9.52 12.04 5.27 0.06 -9.45 16 6 N -0.72 -7.76 4.87 -49.75 -0.24 -8.00 16 7 C 0.20 1.97 0.80 -132.97 -0.11 1.86 16 8 C -0.16 -1.59 7.58 37.16 0.28 -1.31 16 9 C -0.16 -1.06 4.83 -26.73 -0.13 -1.19 16 10 C 0.06 0.44 6.89 37.16 0.26 0.69 16 11 F -0.21 -1.94 17.36 2.25 0.04 -1.90 16 12 C 0.48 5.80 4.79 36.01 0.17 5.97 16 13 O -0.51 -7.12 16.22 -18.75 -0.30 -7.42 16 14 O -0.50 -5.53 13.03 -39.25 -0.51 -6.04 16 15 C 0.06 0.97 11.50 -16.98 -0.20 0.77 16 16 N -0.29 -6.06 12.50 30.86 0.39 -5.68 16 17 N -0.31 -6.84 3.56 -57.78 -0.21 -7.04 16 18 C 0.25 6.11 5.97 -5.19 -0.03 6.08 16 19 C -0.54 -14.35 9.39 -34.44 -0.32 -14.68 16 20 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 23 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.07 1.26 7.05 -51.93 -0.37 0.90 16 29 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 30 H 0.41 3.29 7.43 -40.82 -0.30 2.99 16 31 H 0.08 0.66 6.16 -51.93 -0.32 0.34 16 32 H 0.09 1.21 6.16 -51.93 -0.32 0.89 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.61 6.82 -51.93 -0.35 0.26 16 37 H 0.09 0.54 6.43 -51.93 -0.33 0.20 16 38 H 0.41 2.96 9.10 45.56 0.41 3.38 16 39 H 0.18 1.95 7.50 -52.49 -0.39 1.55 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.37 7.02 -51.93 -0.36 1.00 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -33.00 357.78 -5.14 -38.14 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.34 Total: 5.89 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.13 Total: 4.14 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.67 Total: -44.27 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.75 Total: -22.92 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.00 -5.14 -38.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599978507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.452 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds